Wall clock time and date at job start Tue Mar 31 2020 14:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38193 * 120.75420 * 2 1 4 4 N 1.32442 * 119.28929 * 180.27404 * 3 2 1 5 5 C 1.32532 * 120.93629 * 359.72903 * 4 3 2 6 6 N 1.38424 * 119.17835 * 180.02562 * 5 4 3 7 7 C 1.36990 * 120.00388 * 6.28595 * 6 5 4 8 8 H 1.08000 * 120.00274 * 217.43961 * 7 6 5 9 9 C 1.38830 * 119.99780 * 37.42841 * 7 6 5 10 10 N 1.31539 * 120.00122 * 28.07558 * 9 7 6 11 11 Si 1.86796 * 120.00036 * 208.07525 * 9 7 6 12 12 H 1.48500 * 109.47333 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47190 * 119.99991 * 11 9 7 14 14 H 1.48503 * 109.47394 * 239.99952 * 11 9 7 15 15 C 1.46507 * 120.00011 * 186.28882 * 6 5 4 16 16 C 1.50700 * 109.47226 * 96.40886 * 15 6 5 17 17 C 1.38229 * 119.99612 * 275.00375 * 16 15 6 18 18 C 1.38237 * 119.99610 * 179.76716 * 17 16 15 19 19 C 1.38238 * 120.00017 * 0.50796 * 18 17 16 20 20 C 1.38237 * 119.99926 * 359.74739 * 19 18 17 21 21 C 1.38229 * 119.99965 * 95.27990 * 16 15 6 22 22 N 1.32495 * 121.64567 * 359.97438 * 5 4 3 23 23 C 1.32894 * 120.61017 * 0.02562 * 22 5 4 24 24 N 1.38535 * 120.48117 * 180.02562 * 23 22 5 25 25 C 1.46500 * 120.00321 * 2.68935 * 24 23 22 26 26 C 1.53001 * 109.47090 * 274.85493 * 25 24 23 27 27 C 1.53006 * 109.47456 * 154.85716 * 25 24 23 28 28 H 1.09005 * 109.46678 * 270.26943 * 1 2 3 29 29 H 1.08993 * 109.47305 * 30.26731 * 1 2 3 30 30 H 1.09001 * 109.46891 * 150.27036 * 1 2 3 31 31 H 1.08000 * 120.35263 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00476 * 184.97854 * 10 9 7 33 33 H 1.09005 * 109.46658 * 216.41169 * 15 6 5 34 34 H 1.09001 * 109.46712 * 336.40180 * 15 6 5 35 35 H 1.07997 * 120.00893 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.00330 * 180.22659 * 18 17 16 37 37 H 1.08006 * 119.99839 * 179.72226 * 19 18 17 38 38 H 1.07996 * 120.00066 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.00233 * 0.02562 * 21 16 15 40 40 H 0.97006 * 120.00058 * 182.69719 * 24 23 22 41 41 H 1.09000 * 109.47481 * 34.85320 * 25 24 23 42 42 H 1.09002 * 109.47132 * 293.62063 * 26 25 24 43 43 H 1.09000 * 109.47437 * 53.62110 * 26 25 24 44 44 H 1.08998 * 109.47290 * 173.61760 * 26 25 24 45 45 H 1.08995 * 109.47148 * 179.97438 * 27 25 24 46 46 H 1.08997 * 109.46818 * 300.00334 * 27 25 24 47 47 H 1.08999 * 109.46644 * 59.99645 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1876 0.0000 4 7 3.5376 1.1537 -0.0055 5 6 4.1897 -0.0001 -0.0057 6 7 5.5739 0.0070 -0.0110 7 6 6.2534 1.1900 0.1139 8 1 7.1635 1.3515 -0.4446 9 6 5.7718 2.1813 0.9581 10 7 5.0515 1.8568 2.0099 11 14 6.1467 3.9760 0.6005 12 1 6.9685 4.0739 -0.6325 13 1 4.8751 4.7183 0.4074 14 1 6.8939 4.5626 1.7419 15 6 6.3123 -1.2507 -0.1502 16 6 6.6963 -1.4506 -1.5937 17 6 5.8019 -2.0322 -2.4726 18 6 6.1523 -2.2112 -3.7977 19 6 7.4011 -1.8182 -4.2416 20 6 8.2975 -1.2414 -3.3614 21 6 7.9451 -1.0576 -2.0375 22 7 3.5497 -1.1602 0.0002 23 6 2.2214 -1.2003 0.0059 24 7 1.5550 -2.4148 0.0126 25 6 2.3139 -3.6665 0.0729 26 6 2.7355 -4.0758 -1.3398 27 6 1.4396 -4.7643 0.6824 28 1 -0.3633 0.0048 1.0277 29 1 -0.3633 0.8875 -0.5179 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6918 2.1332 0.0004 32 1 4.6546 2.5510 2.5589 33 1 7.2124 -1.2133 0.4635 34 1 5.6839 -2.0790 0.1768 35 1 4.8280 -2.3437 -2.1248 36 1 5.4522 -2.6622 -4.4853 37 1 7.6765 -1.9622 -5.2760 38 1 9.2733 -0.9347 -3.7081 39 1 8.6457 -0.6077 -1.3497 40 1 0.5858 -2.4365 -0.0228 41 1 3.2011 -3.5242 0.6899 42 1 1.8506 -4.3278 -1.9244 43 1 3.2620 -3.2487 -1.8159 44 1 3.3941 -4.9426 -1.2856 45 1 2.0041 -5.6956 0.7268 46 1 1.1392 -4.4726 1.6887 47 1 0.5524 -4.9065 0.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:34 Heat of formation + Delta-G solvation = 83.089696 kcal Electronic energy + Delta-G solvation = -28699.203528 eV Core-core repulsion = 25074.983599 eV Total energy + Delta-G solvation = -3624.219929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36838 -40.06908 -38.38817 -37.15048 -34.36577 -33.98436 -33.49009 -31.81136 -31.71304 -30.66851 -28.04880 -27.72304 -27.50971 -25.06536 -24.20875 -23.36535 -22.67757 -22.03951 -21.50420 -19.92020 -18.36490 -17.72833 -17.40544 -16.85216 -16.34661 -16.05777 -15.98244 -15.73183 -15.62350 -15.15097 -15.04794 -14.83224 -14.43079 -14.21206 -14.16401 -13.86918 -13.62217 -13.46729 -13.30929 -13.02390 -12.95007 -12.86144 -12.82600 -12.75826 -12.52784 -12.35351 -12.20177 -12.02196 -11.87637 -11.62642 -11.46695 -11.11480 -10.82430 -10.30338 -9.73601 -9.63490 -9.26059 -9.11912 -8.43031 -7.93875 -5.75728 0.50022 0.58364 0.90445 1.20699 1.43790 1.50774 1.57071 2.28609 2.48942 2.82881 3.11334 3.29965 3.69736 3.97222 3.99718 4.08320 4.12000 4.22435 4.27227 4.36405 4.42200 4.45263 4.46579 4.53524 4.64341 4.68963 4.72555 4.80513 4.84578 4.90857 4.97532 4.99450 5.02552 5.15827 5.19403 5.24629 5.28289 5.31490 5.45776 5.48760 5.54048 5.64719 5.67517 5.86668 5.92365 6.09647 6.21071 6.37303 6.56259 6.97425 7.23828 7.41881 7.79816 8.40580 8.86989 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008244 B = 0.006711 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.555856 B = 4171.028644 C = 6684.559243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.363 4.363 3 C 0.179 3.821 4 N -0.590 5.590 5 C 0.566 3.434 6 N -0.422 5.422 7 C -0.347 4.347 8 H 0.077 0.923 9 C 0.055 3.945 10 N -0.858 5.858 11 Si 0.958 3.042 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.283 1.283 15 C 0.167 3.833 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.118 4.118 22 N -0.642 5.642 23 C 0.455 3.545 24 N -0.705 5.705 25 C 0.149 3.851 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.413 0.587 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.452 -11.559 -7.973 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.378 4.378 3 C 0.011 3.989 4 N -0.315 5.315 5 C 0.212 3.788 6 N -0.121 5.121 7 C -0.474 4.474 8 H 0.095 0.905 9 C -0.153 4.153 10 N -0.492 5.492 11 Si 0.784 3.216 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.209 1.209 15 C 0.044 3.956 16 C -0.102 4.102 17 C -0.136 4.136 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.137 4.137 22 N -0.378 5.378 23 C 0.207 3.793 24 N -0.343 5.343 25 C 0.044 3.956 26 C -0.211 4.211 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.252 0.748 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.021 -11.637 -7.729 14.537 hybrid contribution -1.054 1.335 0.438 1.757 sum -5.074 -10.302 -7.291 13.603 Atomic orbital electron populations 1.20120 0.88412 1.02252 1.01084 1.20551 0.98820 0.92843 1.25599 1.22666 0.89144 0.97656 0.89448 1.67923 1.09205 1.29530 1.24801 1.18986 0.86985 0.83451 0.89374 1.41747 0.98822 1.05467 1.66082 1.19073 1.10579 0.93280 1.24487 0.90500 1.25551 0.95728 1.02495 0.91520 1.70136 1.32457 1.34700 1.11907 0.85485 0.77449 0.80692 0.78016 1.19228 1.21202 1.20943 1.20254 0.95793 0.87302 0.92292 1.20397 0.94835 0.98294 0.96635 1.21248 0.98911 0.99191 0.94224 1.21362 0.97637 1.00851 0.95060 1.21437 0.93512 0.98644 1.00617 1.21401 1.00805 0.99461 0.92773 1.21227 0.96086 0.99330 0.97071 1.67172 1.08449 1.28687 1.33460 1.18144 0.87634 0.86709 0.86785 1.44422 1.08162 1.01300 1.80456 1.20808 0.94862 0.83325 0.96650 1.22157 1.01480 1.00794 0.96704 1.21998 1.00220 0.97599 1.00802 0.92706 0.91652 0.91580 0.83230 0.93173 0.91881 0.90762 0.86914 0.84523 0.83259 0.83762 0.86411 0.74817 0.92944 0.91600 0.94670 0.91135 0.89943 0.92601 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 9.66 71.24 0.69 -0.94 16 2 C -0.36 -14.02 5.93 -19.53 -0.12 -14.14 16 3 C 0.18 8.11 10.99 84.59 0.93 9.04 16 4 N -0.59 -31.70 7.23 -198.16 -1.43 -33.13 16 5 C 0.57 29.96 7.41 261.46 1.94 31.90 16 6 N -0.42 -22.39 2.63 -528.31 -1.39 -23.78 16 7 C -0.35 -19.42 9.19 84.03 0.77 -18.64 16 8 H 0.08 4.24 7.97 -2.91 -0.02 4.21 16 9 C 0.06 3.09 3.90 84.88 0.33 3.42 16 10 N -0.86 -50.73 11.98 21.65 0.26 -50.47 16 11 Si 0.96 45.48 29.64 68.60 2.03 47.52 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 C 0.17 7.58 5.65 85.63 0.48 8.06 16 16 C -0.10 -3.97 5.41 -19.87 -0.11 -4.08 16 17 C -0.12 -4.31 9.72 22.27 0.22 -4.09 16 18 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 19 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 20 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 21 C -0.12 -4.20 9.68 22.27 0.22 -3.98 16 22 N -0.64 -29.75 7.91 -195.48 -1.55 -31.30 16 23 C 0.46 18.11 7.47 133.21 1.00 19.10 16 24 N -0.71 -20.75 5.14 -324.09 -1.66 -22.41 16 25 C 0.15 3.92 3.19 44.99 0.14 4.07 16 26 C -0.15 -3.76 9.50 71.98 0.68 -3.08 16 27 C -0.15 -2.68 9.38 71.98 0.68 -2.00 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 30 H 0.07 1.45 6.63 -2.39 -0.02 1.44 16 31 H 0.15 5.95 8.06 -2.91 -0.02 5.92 16 32 H 0.26 14.78 8.32 -92.71 -0.77 14.01 16 33 H 0.06 2.82 8.00 -2.38 -0.02 2.80 16 34 H 0.07 3.37 7.04 -2.39 -0.02 3.35 16 35 H 0.11 4.36 5.92 -2.91 -0.02 4.34 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.41 9.67 6.70 -92.70 -0.62 9.04 16 41 H 0.05 1.76 7.60 -2.39 -0.02 1.74 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.03 1.09 6.01 -2.39 -0.01 1.07 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.73 384.50 5.13 -65.60 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.35 Total: 33.59 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 8.52 Total: 14.39 kcal Atomic # 7 Polarization: -155.32 SS G_CDS: -5.77 Total: -161.10 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.52 kcal Total: -70.73 5.13 -65.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.689 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds