Wall clock time and date at job start Tue Mar 31 2020 15:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46826 * 2 1 4 4 C 1.52998 * 109.46513 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46711 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00151 * 265.82345 * 5 4 3 7 7 H 1.07997 * 119.99666 * 1.69747 * 6 5 4 8 8 C 1.38849 * 119.99977 * 181.68800 * 6 5 4 9 9 N 1.31532 * 120.00177 * 7.89357 * 8 6 5 10 10 Si 1.86798 * 119.99940 * 187.88641 * 8 6 5 11 11 H 1.48498 * 109.47102 * 90.00606 * 10 8 6 12 12 H 1.48504 * 109.47192 * 210.00118 * 10 8 6 13 13 H 1.48491 * 109.47217 * 330.00739 * 10 8 6 14 14 C 1.38542 * 119.99879 * 85.82739 * 5 4 3 15 15 N 1.32913 * 120.49420 * 263.61215 * 14 5 4 16 16 C 1.32472 * 120.61408 * 180.02562 * 15 14 5 17 17 C 1.48411 * 119.16669 * 179.97438 * 16 15 14 18 18 C 1.39736 * 120.90744 * 359.69563 * 17 16 15 19 19 C 1.38052 * 119.02113 * 179.80347 * 18 17 16 20 20 N 1.31873 * 120.88263 * 0.48117 * 19 18 17 21 21 C 1.31875 * 122.00966 * 359.74717 * 20 19 18 22 22 C 1.38062 * 120.88146 * 0.02562 * 21 20 19 23 23 N 1.32584 * 121.66712 * 359.95154 * 16 15 14 24 24 C 1.32366 * 120.94637 * 0.02917 * 23 16 15 25 25 C 1.50702 * 120.35681 * 180.02562 * 24 23 16 26 26 C 1.38283 * 119.28952 * 359.97438 * 24 23 16 27 27 C 1.50699 * 120.76400 * 179.72959 * 26 24 23 28 28 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47311 * 300.00493 * 1 2 3 30 30 H 1.08998 * 109.46826 * 60.00180 * 1 2 3 31 31 H 1.09000 * 109.47411 * 240.00052 * 2 1 3 32 32 H 1.08998 * 109.46826 * 119.99820 * 2 1 3 33 33 H 1.09000 * 109.47083 * 59.99851 * 3 2 1 34 34 H 1.08998 * 109.47271 * 299.99547 * 3 2 1 35 35 H 1.08991 * 109.47617 * 60.00251 * 4 3 2 36 36 H 1.09007 * 109.47557 * 299.99437 * 4 3 2 37 37 H 0.97001 * 120.00361 * 179.97438 * 9 8 6 38 38 H 1.08006 * 120.48742 * 359.97438 * 18 17 16 39 39 H 1.08004 * 119.55978 * 180.20534 * 19 18 17 40 40 H 1.07999 * 119.56357 * 179.97438 * 21 20 19 41 41 H 1.07991 * 120.49077 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47427 * 269.97873 * 25 24 23 43 43 H 1.09004 * 109.46923 * 29.97504 * 25 24 23 44 44 H 1.08997 * 109.47190 * 149.97448 * 25 24 23 45 45 H 1.08995 * 109.47672 * 85.04394 * 27 26 24 46 46 H 1.09003 * 109.47207 * 205.04878 * 27 26 24 47 47 H 1.09001 * 109.47371 * 325.04281 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3684 3.4398 -1.1830 7 1 4.2271 2.9170 -2.1173 8 6 4.8644 4.7367 -1.1812 9 7 5.1828 5.3175 -0.0448 10 14 5.0797 5.6566 -2.7926 11 1 3.8331 6.3989 -3.1092 12 1 6.2080 6.6141 -2.6692 13 1 5.3689 4.6882 -3.8805 14 6 4.2063 3.5067 1.1963 15 7 3.2494 4.3199 1.6317 16 6 3.3887 4.9744 2.7749 17 6 2.3002 5.8747 3.2302 18 6 1.1413 6.0424 2.4677 19 6 0.1516 6.8864 2.9302 20 7 0.2935 7.5359 4.0691 21 6 1.3728 7.4093 4.8162 22 6 2.4088 6.5823 4.4302 23 7 4.4757 4.8452 3.5229 24 6 5.4679 4.0521 3.1506 25 6 6.6972 3.9148 4.0114 26 6 5.3638 3.3501 1.9638 27 6 6.4760 2.4425 1.5050 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9330 0.9289 0.8909 37 1 5.5296 6.2234 -0.0435 38 1 1.0206 5.5174 1.5316 39 1 -0.7492 7.0199 2.3495 40 1 1.4478 7.9604 5.7419 41 1 3.2900 6.4836 5.0467 42 1 7.4320 4.6646 3.7179 43 1 6.4267 4.0610 5.0571 44 1 7.1222 2.9195 3.8818 45 1 6.3594 1.4624 1.9673 46 1 6.4371 2.3397 0.4205 47 1 7.4362 2.8691 1.7951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:33 Heat of formation + Delta-G solvation = 90.105565 kcal Electronic energy + Delta-G solvation = -28432.415292 eV Core-core repulsion = 24808.499594 eV Total energy + Delta-G solvation = -3623.915698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.19993 -39.31879 -36.72015 -34.46587 -34.10269 -32.10184 -31.55699 -31.14802 -30.75104 -28.27024 -28.05351 -26.36862 -24.56581 -23.32337 -23.18305 -22.60320 -20.87406 -20.57880 -20.18415 -17.89919 -16.82356 -16.50164 -15.36898 -15.31730 -15.14588 -15.00750 -14.27620 -14.21825 -13.68714 -13.58783 -13.53747 -13.44113 -13.26903 -13.15768 -12.47859 -12.37269 -12.28120 -12.20403 -12.10332 -11.87370 -11.45249 -11.28516 -11.20346 -11.14942 -10.92069 -10.80253 -10.66589 -10.45554 -10.15017 -9.97399 -9.83915 -9.57480 -9.22367 -9.12991 -9.05705 -8.79314 -8.10505 -7.71650 -7.31691 -5.97527 -3.50383 1.14702 1.52332 2.37245 2.56647 3.26616 3.31940 3.34601 4.15858 4.21588 4.46088 4.74225 4.75680 5.01291 5.10418 5.22702 5.28504 5.34742 5.40714 5.47987 5.54383 5.57108 5.69440 5.78355 5.88275 5.97810 6.01377 6.02903 6.04951 6.05141 6.15409 6.16044 6.17367 6.22327 6.25707 6.32558 6.33046 6.45055 6.45849 6.53136 6.76033 6.78726 6.93105 6.95662 7.04218 7.14057 7.43714 7.48939 8.02787 8.26500 8.29559 8.98321 9.33527 9.56607 9.89578 11.02218 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007888 B = 0.005378 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.925315 B = 5205.150692 C = 5848.002966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.156 3.844 5 N -0.551 5.551 6 C -0.259 4.259 7 H 0.089 0.911 8 C 0.005 3.995 9 N -0.899 5.899 10 Si 0.920 3.080 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.541 3.459 15 N -0.514 5.514 16 C 0.338 3.662 17 C 0.032 3.968 18 C -0.130 4.130 19 C 0.084 3.916 20 N -0.491 5.491 21 C 0.082 3.918 22 C -0.138 4.138 23 N -0.538 5.538 24 C 0.149 3.851 25 C -0.093 4.093 26 C -0.160 4.160 27 C -0.088 4.088 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -5.690 5.795 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.031 3.969 5 N -0.269 5.269 6 C -0.387 4.387 7 H 0.106 0.894 8 C -0.194 4.194 9 N -0.543 5.543 10 Si 0.750 3.250 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.303 3.697 15 N -0.233 5.233 16 C 0.071 3.929 17 C 0.022 3.978 18 C -0.151 4.151 19 C -0.072 4.072 20 N -0.201 5.201 21 C -0.075 4.075 22 C -0.160 4.160 23 N -0.254 5.254 24 C 0.006 3.994 25 C -0.151 4.151 26 C -0.169 4.169 27 C -0.146 4.146 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.600 -4.406 6.300 8.489 hybrid contribution 1.476 -0.156 -1.607 2.187 sum -2.124 -4.562 4.693 6.881 Atomic orbital electron populations 1.21750 0.96467 1.00694 1.01743 1.21492 0.95410 0.97881 1.01215 1.22219 0.98208 0.94935 1.02529 1.20907 0.92056 0.84037 0.99926 1.41350 1.74524 1.09577 1.01456 1.19336 1.38101 0.96966 0.84258 0.89371 1.24828 0.99669 0.97324 0.97541 1.69265 1.46892 1.14360 1.23796 0.85996 0.77403 0.79559 0.82082 1.21307 1.21699 1.20365 1.17326 0.85520 0.82757 0.84059 1.68175 1.34359 1.08409 1.12329 1.20339 0.90403 0.94300 0.87862 1.18608 0.91976 0.93735 0.93511 1.22348 0.93117 0.98610 1.01058 1.22607 0.98553 0.93311 0.92765 1.67504 1.24392 1.22200 1.05999 1.22581 0.89258 0.96735 0.98896 1.22260 1.00438 0.96579 0.96689 1.67735 1.01844 1.20113 1.35754 1.20888 0.94043 0.91720 0.92779 1.20580 0.93927 1.02023 0.98572 1.21469 0.97670 1.01530 0.96202 1.20418 0.95090 0.95950 1.03107 0.93453 0.93021 0.92884 0.92387 0.92715 0.92462 0.91730 0.91882 0.94224 0.92598 0.83603 0.82951 0.83024 0.83940 0.91002 0.91354 0.91191 0.93290 0.90019 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.37 5.53 -26.73 -0.15 -2.52 16 4 C 0.16 2.89 5.66 -4.04 -0.02 2.87 16 5 N -0.55 -12.51 1.66 -114.84 -0.19 -12.70 16 6 C -0.26 -6.43 9.63 -15.05 -0.14 -6.57 16 7 H 0.09 2.11 7.83 -52.49 -0.41 1.70 16 8 C 0.00 0.13 5.41 -17.45 -0.09 0.03 16 9 N -0.90 -24.44 9.81 55.49 0.54 -23.89 16 10 Si 0.92 21.18 29.56 -169.99 -5.02 16.15 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.54 12.68 3.61 -154.79 -0.56 12.12 16 15 N -0.51 -12.32 9.11 -10.34 -0.09 -12.42 16 16 C 0.34 7.61 7.57 -157.01 -1.19 6.42 16 17 C 0.03 0.63 5.91 -104.59 -0.62 0.01 16 18 C -0.13 -2.38 9.64 -39.09 -0.38 -2.76 16 19 C 0.08 1.35 11.17 -17.60 -0.20 1.15 16 20 N -0.49 -8.05 10.34 -13.32 -0.14 -8.19 16 21 C 0.08 1.24 11.17 -17.60 -0.20 1.05 16 22 C -0.14 -2.34 9.65 -39.09 -0.38 -2.72 16 23 N -0.54 -11.56 9.48 -7.46 -0.07 -11.63 16 24 C 0.15 3.04 6.82 -82.34 -0.56 2.48 16 25 C -0.09 -1.44 9.47 36.01 0.34 -1.10 16 26 C -0.16 -3.45 5.14 -104.04 -0.53 -3.98 16 27 C -0.09 -1.62 8.96 36.01 0.32 -1.29 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.09 7.99 -51.93 -0.42 0.68 16 36 H 0.04 0.69 8.08 -51.92 -0.42 0.27 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.15 2.80 7.61 -52.48 -0.40 2.40 16 39 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 40 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.14 2.28 7.61 -52.49 -0.40 1.88 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.93 6.90 -51.93 -0.36 0.58 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.68 7.28 -51.93 -0.38 1.31 16 47 H 0.05 0.91 7.10 -51.93 -0.37 0.54 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -29.60 388.71 -10.62 -40.22 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.36 Total: 4.66 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -4.14 Total: 1.93 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: 0.05 Total: -68.83 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.60 -10.62 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.328 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds