Wall clock time and date at job start Tue Mar 31 2020 15:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46826 * 2 1 4 4 C 1.52998 * 109.46513 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46711 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00151 * 265.82345 * 5 4 3 7 7 H 1.07997 * 119.99666 * 1.69747 * 6 5 4 8 8 C 1.38849 * 119.99977 * 181.68800 * 6 5 4 9 9 N 1.31532 * 120.00177 * 7.89357 * 8 6 5 10 10 Si 1.86798 * 119.99940 * 187.88641 * 8 6 5 11 11 H 1.48498 * 109.47102 * 90.00606 * 10 8 6 12 12 H 1.48504 * 109.47192 * 210.00118 * 10 8 6 13 13 H 1.48491 * 109.47217 * 330.00739 * 10 8 6 14 14 C 1.38542 * 119.99879 * 85.82739 * 5 4 3 15 15 N 1.32913 * 120.49420 * 263.61215 * 14 5 4 16 16 C 1.32472 * 120.61408 * 180.02562 * 15 14 5 17 17 C 1.48411 * 119.16669 * 179.97438 * 16 15 14 18 18 C 1.39736 * 120.90744 * 359.69563 * 17 16 15 19 19 C 1.38052 * 119.02113 * 179.80347 * 18 17 16 20 20 N 1.31873 * 120.88263 * 0.48117 * 19 18 17 21 21 C 1.31875 * 122.00966 * 359.74717 * 20 19 18 22 22 C 1.38062 * 120.88146 * 0.02562 * 21 20 19 23 23 N 1.32584 * 121.66712 * 359.95154 * 16 15 14 24 24 C 1.32366 * 120.94637 * 0.02917 * 23 16 15 25 25 C 1.50702 * 120.35681 * 180.02562 * 24 23 16 26 26 C 1.38283 * 119.28952 * 359.97438 * 24 23 16 27 27 C 1.50699 * 120.76400 * 179.72959 * 26 24 23 28 28 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47311 * 300.00493 * 1 2 3 30 30 H 1.08998 * 109.46826 * 60.00180 * 1 2 3 31 31 H 1.09000 * 109.47411 * 240.00052 * 2 1 3 32 32 H 1.08998 * 109.46826 * 119.99820 * 2 1 3 33 33 H 1.09000 * 109.47083 * 59.99851 * 3 2 1 34 34 H 1.08998 * 109.47271 * 299.99547 * 3 2 1 35 35 H 1.08991 * 109.47617 * 60.00251 * 4 3 2 36 36 H 1.09007 * 109.47557 * 299.99437 * 4 3 2 37 37 H 0.97001 * 120.00361 * 179.97438 * 9 8 6 38 38 H 1.08006 * 120.48742 * 359.97438 * 18 17 16 39 39 H 1.08004 * 119.55978 * 180.20534 * 19 18 17 40 40 H 1.07999 * 119.56357 * 179.97438 * 21 20 19 41 41 H 1.07991 * 120.49077 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47427 * 269.97873 * 25 24 23 43 43 H 1.09004 * 109.46923 * 29.97504 * 25 24 23 44 44 H 1.08997 * 109.47190 * 149.97448 * 25 24 23 45 45 H 1.08995 * 109.47672 * 85.04394 * 27 26 24 46 46 H 1.09003 * 109.47207 * 205.04878 * 27 26 24 47 47 H 1.09001 * 109.47371 * 325.04281 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3684 3.4398 -1.1830 7 1 4.2271 2.9170 -2.1173 8 6 4.8644 4.7367 -1.1812 9 7 5.1828 5.3175 -0.0448 10 14 5.0797 5.6566 -2.7926 11 1 3.8331 6.3989 -3.1092 12 1 6.2080 6.6141 -2.6692 13 1 5.3689 4.6882 -3.8805 14 6 4.2063 3.5067 1.1963 15 7 3.2494 4.3199 1.6317 16 6 3.3887 4.9744 2.7749 17 6 2.3002 5.8747 3.2302 18 6 1.1413 6.0424 2.4677 19 6 0.1516 6.8864 2.9302 20 7 0.2935 7.5359 4.0691 21 6 1.3728 7.4093 4.8162 22 6 2.4088 6.5823 4.4302 23 7 4.4757 4.8452 3.5229 24 6 5.4679 4.0521 3.1506 25 6 6.6972 3.9148 4.0114 26 6 5.3638 3.3501 1.9638 27 6 6.4760 2.4425 1.5050 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9330 0.9289 0.8909 37 1 5.5296 6.2234 -0.0435 38 1 1.0206 5.5174 1.5316 39 1 -0.7492 7.0199 2.3495 40 1 1.4478 7.9604 5.7419 41 1 3.2900 6.4836 5.0467 42 1 7.4320 4.6646 3.7179 43 1 6.4267 4.0610 5.0571 44 1 7.1222 2.9195 3.8818 45 1 6.3594 1.4624 1.9673 46 1 6.4371 2.3397 0.4205 47 1 7.4362 2.8691 1.7951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:32 Heat of formation + Delta-G solvation = 76.453967 kcal Electronic energy + Delta-G solvation = -28433.007270 eV Core-core repulsion = 24808.499594 eV Total energy + Delta-G solvation = -3624.507676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74878 -40.70705 -38.31964 -35.82876 -35.59778 -33.80349 -33.13418 -32.64071 -32.09085 -29.66700 -29.49900 -27.92635 -26.27955 -24.72688 -24.58201 -23.98431 -22.25906 -22.08358 -21.69088 -19.59513 -18.39744 -17.97795 -17.11354 -16.66401 -16.51150 -16.36899 -15.90603 -15.78841 -15.32233 -15.08374 -14.80631 -14.77693 -14.67207 -14.49110 -13.86405 -13.79941 -13.66017 -13.57460 -13.39520 -13.20429 -13.10939 -12.94981 -12.68667 -12.55754 -12.40764 -12.33685 -12.14726 -11.95508 -11.75704 -11.43525 -11.38209 -11.00826 -10.96570 -10.74057 -10.53347 -10.08612 -9.80291 -9.30481 -9.11350 -7.89561 -5.43743 -0.33369 0.22165 0.77336 0.99043 1.40097 1.43302 1.49362 2.37938 2.82268 2.89855 3.15768 3.30838 3.44158 3.57524 3.69613 4.07102 4.08053 4.15464 4.18740 4.20524 4.30056 4.35285 4.43158 4.47234 4.49235 4.69428 4.70734 4.75073 4.80908 4.88986 4.91084 4.92024 4.95068 4.97426 5.01593 5.05070 5.12828 5.16910 5.30117 5.34930 5.42878 5.45034 5.51095 5.56216 5.60507 5.73818 5.86835 6.13241 6.65985 6.97043 7.06894 7.62356 7.82808 8.02752 9.03693 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007888 B = 0.005378 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.925315 B = 5205.150692 C = 5848.002966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.126 4.126 4 C 0.152 3.848 5 N -0.561 5.561 6 C -0.252 4.252 7 H 0.094 0.906 8 C -0.045 4.045 9 N -0.917 5.917 10 Si 0.971 3.029 11 H -0.299 1.299 12 H -0.301 1.301 13 H -0.261 1.261 14 C 0.518 3.482 15 N -0.542 5.542 16 C 0.321 3.679 17 C 0.002 3.998 18 C -0.145 4.145 19 C 0.093 3.907 20 N -0.497 5.497 21 C 0.094 3.906 22 C -0.138 4.138 23 N -0.542 5.542 24 C 0.139 3.861 25 C -0.087 4.087 26 C -0.179 4.179 27 C -0.077 4.077 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.244 0.756 38 H 0.126 0.874 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.150 0.850 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.398 -6.534 6.861 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.166 4.166 4 C 0.028 3.972 5 N -0.280 5.280 6 C -0.380 4.380 7 H 0.112 0.888 8 C -0.241 4.241 9 N -0.563 5.563 10 Si 0.801 3.199 11 H -0.227 1.227 12 H -0.228 1.228 13 H -0.185 1.185 14 C 0.282 3.718 15 N -0.261 5.261 16 C 0.054 3.946 17 C -0.008 4.008 18 C -0.167 4.167 19 C -0.063 4.063 20 N -0.206 5.206 21 C -0.062 4.062 22 C -0.160 4.160 23 N -0.259 5.259 24 C -0.005 4.005 25 C -0.144 4.144 26 C -0.187 4.187 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.144 0.856 39 H 0.200 0.800 40 H 0.211 0.789 41 H 0.168 0.832 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.649 -5.298 7.356 9.773 hybrid contribution 1.432 0.081 -1.880 2.365 sum -2.217 -5.218 5.477 7.883 Atomic orbital electron populations 1.21734 0.95459 1.02052 1.01240 1.21440 0.96262 0.95118 1.02399 1.22037 0.97240 0.97127 1.00158 1.21113 0.92746 0.82404 1.00919 1.41541 1.74819 1.10767 1.00904 1.19605 1.36219 0.96867 0.85358 0.88795 1.25432 1.00740 0.98326 0.99560 1.69523 1.48425 1.13330 1.25006 0.85174 0.76074 0.78462 0.80196 1.22679 1.22814 1.18550 1.17673 0.86273 0.83226 0.84639 1.68134 1.35310 1.09296 1.13398 1.20884 0.91463 0.94536 0.87740 1.18836 0.92018 0.94744 0.95193 1.22273 0.93900 0.99830 1.00674 1.22984 0.98670 0.91877 0.92766 1.67649 1.24804 1.22138 1.06047 1.23197 0.87880 0.95488 0.99624 1.22385 1.01361 0.96492 0.95724 1.67848 1.02001 1.20470 1.35629 1.21696 0.95108 0.90535 0.93121 1.20670 0.91731 1.03611 0.98426 1.21791 0.97772 1.02447 0.96693 1.20361 0.94747 0.96923 1.01461 0.91108 0.93819 0.93185 0.90893 0.91734 0.95148 0.93728 0.90645 0.93208 0.94503 0.85599 0.80046 0.78939 0.83228 0.90520 0.89808 0.88747 0.90481 0.92595 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.11 -2.92 5.93 30.60 0.18 -2.73 16 3 C -0.13 -4.36 5.53 30.60 0.17 -4.19 16 4 C 0.15 5.64 5.66 86.38 0.49 6.13 16 5 N -0.56 -26.05 1.66 -517.25 -0.86 -26.91 16 6 C -0.25 -12.73 9.63 84.04 0.81 -11.92 16 7 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 8 C -0.05 -2.40 5.41 84.88 0.46 -1.94 16 9 N -0.92 -51.52 9.81 21.65 0.21 -51.31 16 10 Si 0.97 44.58 29.56 68.60 2.03 46.61 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 14 C 0.52 24.96 3.61 133.22 0.48 25.44 16 15 N -0.54 -27.14 9.11 -186.64 -1.70 -28.84 16 16 C 0.32 14.93 7.57 137.61 1.04 15.97 16 17 C 0.00 0.09 5.91 -19.84 -0.12 -0.03 16 18 C -0.15 -5.49 9.64 22.59 0.22 -5.27 16 19 C 0.09 2.91 11.17 84.64 0.95 3.85 16 20 N -0.50 -15.33 10.34 -196.07 -2.03 -17.35 16 21 C 0.09 2.66 11.17 84.64 0.95 3.61 16 22 C -0.14 -4.59 9.65 22.59 0.22 -4.37 16 23 N -0.54 -23.58 9.48 -177.51 -1.68 -25.27 16 24 C 0.14 5.63 6.82 42.49 0.29 5.92 16 25 C -0.09 -2.52 9.47 71.24 0.67 -1.85 16 26 C -0.18 -7.73 5.14 -19.49 -0.10 -7.83 16 27 C -0.08 -2.77 8.96 71.24 0.64 -2.13 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.56 7.99 -2.39 -0.02 2.54 16 36 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 37 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.13 5.19 7.61 -2.91 -0.02 5.17 16 39 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 41 H 0.15 4.67 7.61 -2.91 -0.02 4.65 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.24 6.90 -2.39 -0.02 2.23 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.06 2.29 7.28 -2.39 -0.02 2.28 16 47 H 0.07 2.22 7.10 -2.39 -0.02 2.21 16 Total: -1.00 -66.61 388.71 4.98 -61.63 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.95 Total: 25.48 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 8.05 Total: 15.95 kcal Atomic # 7 Polarization: -143.61 SS G_CDS: -6.06 Total: -149.67 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.61 4.98 -61.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.088 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds