Wall clock time and date at job start Tue Mar 31 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47345 * 174.66286 * 3 2 1 5 5 H 1.48508 * 109.46987 * 294.66456 * 3 2 1 6 6 H 1.48504 * 109.46754 * 54.66043 * 3 2 1 7 7 C 1.37875 * 119.99876 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85222 * 349.40492 * 7 2 1 9 9 C 1.53230 * 108.53809 * 231.07304 * 8 7 2 10 10 C 1.52962 * 109.40592 * 305.37056 * 9 8 7 11 11 H 1.09001 * 109.41259 * 303.56850 * 10 9 8 12 12 N 1.46495 * 109.41493 * 183.70295 * 10 9 8 13 13 C 1.38325 * 119.99710 * 155.00124 * 12 10 9 14 14 N 1.32961 * 120.79915 * 0.02562 * 13 12 10 15 15 C 1.32073 * 121.04612 * 179.97438 * 14 13 12 16 16 N 1.31543 * 122.67590 * 359.94982 * 15 14 13 17 17 C 1.33165 * 120.76851 * 0.06997 * 16 15 14 18 18 N 1.36885 * 134.19015 * 179.97438 * 17 16 15 19 19 H 0.97001 * 124.96878 * 0.07140 * 18 17 16 20 20 C 1.36881 * 110.06404 * 180.11436 * 18 17 16 21 21 C 1.34715 * 109.51111 * 359.96208 * 20 18 17 22 22 C 1.40347 * 120.79699 * 179.71862 * 13 12 10 23 23 C 1.50692 * 124.64005 * 179.87561 * 21 20 18 24 24 C 1.53359 * 108.46877 * 343.62359 * 23 21 20 25 25 C 1.53140 * 109.30602 * 49.57489 * 24 23 21 26 26 C 1.51115 * 126.79943 * 180.02562 * 20 18 17 27 27 C 1.52967 * 109.81538 * 63.59658 * 10 9 8 28 28 C 1.51275 * 120.84804 * 169.11961 * 7 2 1 29 29 H 0.97003 * 120.00185 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.62633 * 350.78651 * 8 7 2 31 31 H 1.09003 * 109.63213 * 111.35997 * 8 7 2 32 32 H 1.09001 * 109.48200 * 65.34919 * 9 8 7 33 33 H 1.08998 * 109.48592 * 185.37508 * 9 8 7 34 34 H 0.96993 * 120.00540 * 335.00034 * 12 10 9 35 35 H 1.08004 * 118.66045 * 179.97438 * 15 14 13 36 36 H 1.09005 * 109.63384 * 103.31693 * 23 21 20 37 37 H 1.09001 * 109.63385 * 223.92616 * 23 21 20 38 38 H 1.09004 * 109.50330 * 169.52361 * 24 23 21 39 39 H 1.09005 * 109.50172 * 289.62647 * 24 23 21 40 40 H 1.08999 * 109.46232 * 50.01083 * 25 24 23 41 41 H 1.08998 * 109.47060 * 170.00203 * 25 24 23 42 42 H 1.09007 * 109.62204 * 282.89077 * 26 20 18 43 43 H 1.08997 * 109.62853 * 43.45836 * 26 20 18 44 44 H 1.09000 * 109.48067 * 56.38095 * 27 10 9 45 45 H 1.08998 * 109.47740 * 176.41225 * 27 10 9 46 46 H 1.08993 * 109.63156 * 248.64282 * 28 7 2 47 47 H 1.09005 * 109.62633 * 9.21229 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3495 0.1302 5 1 1.9906 2.3386 -1.2724 6 1 1.7952 2.4513 1.1421 7 6 2.0044 -1.1940 0.0005 8 6 1.2868 -2.5039 0.2399 9 6 2.0260 -3.2700 1.3420 10 6 3.4988 -3.4195 0.9569 11 1 3.5716 -3.9123 -0.0126 12 7 4.1866 -4.2275 1.9669 13 6 5.3294 -4.9301 1.6296 14 7 5.8177 -4.8831 0.3938 15 6 6.9087 -5.5516 0.0666 16 7 7.5719 -6.2934 0.9269 17 6 7.1617 -6.4045 2.1889 18 7 7.6235 -7.0798 3.2864 19 1 8.4137 -7.6421 3.3012 20 6 6.8064 -6.8465 4.3595 21 6 5.8055 -6.0230 3.9923 22 6 6.0050 -5.7047 2.5853 23 6 4.7088 -5.5459 4.9090 24 6 4.6856 -6.4478 6.1492 25 6 6.1042 -6.5706 6.7126 26 6 6.9648 -7.4026 5.7556 27 6 4.1559 -2.0406 0.8751 28 6 3.4968 -1.2283 -0.2446 29 1 -0.4850 0.8401 -0.0004 30 1 0.2619 -2.3077 0.5547 31 1 1.2846 -3.0932 -0.6771 32 1 1.9496 -2.7209 2.2804 33 1 1.5792 -4.2571 1.4610 34 1 3.8408 -4.2698 2.8721 35 1 7.2713 -5.4862 -0.9487 36 1 4.9040 -4.5161 5.2085 37 1 3.7497 -5.6054 4.3947 38 1 4.0309 -6.0119 6.9039 39 1 4.3167 -7.4358 5.8737 40 1 6.5392 -5.5770 6.8210 41 1 6.0675 -7.0592 7.6862 42 1 6.6343 -8.4412 5.7756 43 1 8.0104 -7.3425 6.0573 44 1 4.0290 -1.5205 1.8246 45 1 5.2188 -2.1564 0.6632 46 1 3.6992 -1.6993 -1.2064 47 1 3.8918 -0.2123 -0.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167840589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:43 Heat of formation + Delta-G solvation = 55.129044 kcal Electronic energy + Delta-G solvation = -27933.303650 eV Core-core repulsion = 24307.871256 eV Total energy + Delta-G solvation = -3625.432394 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86487 -39.12056 -37.64341 -36.31861 -34.74005 -32.41800 -32.01864 -31.00818 -29.66162 -29.45089 -28.69354 -26.92051 -24.48997 -23.20392 -22.82099 -21.85481 -21.34169 -21.30153 -19.44655 -18.78223 -18.48767 -17.11972 -16.47504 -16.17004 -15.70243 -15.23293 -14.80734 -14.45117 -14.22500 -14.11892 -13.98606 -13.64859 -13.44315 -13.22374 -13.01886 -12.96636 -12.73920 -12.45048 -12.19705 -12.06962 -11.69244 -11.24992 -11.17630 -11.10130 -10.92274 -10.90299 -10.75144 -10.48228 -10.29979 -10.04989 -9.95371 -9.35896 -9.05730 -8.95901 -8.78783 -8.73798 -8.43112 -8.34308 -7.23932 -6.10397 -3.98676 1.23364 1.71579 2.56940 2.66733 3.27490 3.37873 3.39150 3.48972 4.26450 4.33150 4.40306 4.49803 4.53357 4.59411 4.76936 4.86104 4.92316 5.09778 5.17955 5.23388 5.28911 5.34248 5.42360 5.56688 5.66055 5.73566 5.79322 5.85199 5.92819 5.95217 6.06514 6.24873 6.27499 6.50277 6.51916 6.63550 6.74954 6.82882 6.93101 6.98758 7.04872 7.08861 7.21811 7.41256 7.49393 7.58676 7.66753 7.75675 7.82742 7.99816 8.39776 8.70380 8.97445 9.56375 10.99150 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.003317 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.194971 B = 8438.275623 C = 9371.442239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.487 4.487 8 C 0.016 3.984 9 C -0.117 4.117 10 C 0.159 3.841 11 H 0.084 0.916 12 N -0.692 5.692 13 C 0.496 3.504 14 N -0.593 5.593 15 C 0.362 3.638 16 N -0.589 5.589 17 C 0.343 3.657 18 N -0.566 5.566 19 H 0.415 0.585 20 C 0.048 3.952 21 C -0.121 4.121 22 C -0.263 4.263 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.114 4.114 26 C -0.048 4.048 27 C -0.111 4.111 28 C -0.022 4.022 29 H 0.263 0.737 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.403 0.597 35 H 0.194 0.806 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.020 0.980 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 -14.476 12.530 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.506 4.506 8 C -0.021 4.021 9 C -0.155 4.155 10 C 0.056 3.944 11 H 0.102 0.898 12 N -0.320 5.320 13 C 0.245 3.755 14 N -0.322 5.322 15 C 0.070 3.930 16 N -0.316 5.316 17 C 0.105 3.895 18 N -0.172 5.172 19 H 0.252 0.748 20 C -0.059 4.059 21 C -0.129 4.129 22 C -0.277 4.277 23 C -0.093 4.093 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.086 4.086 27 C -0.150 4.150 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.239 0.761 35 H 0.211 0.789 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.810 -14.285 11.567 22.405 hybrid contribution 0.515 0.567 1.049 1.298 sum 13.325 -13.718 12.616 22.911 Atomic orbital electron populations 1.69897 1.06226 1.26826 1.49565 1.24834 0.94598 0.98574 0.94599 0.86768 0.81202 0.83725 0.77749 1.18031 1.20938 1.21319 1.20052 0.90991 0.91801 1.47789 1.19297 0.97189 0.93436 0.92220 1.21976 0.93286 0.98525 1.01754 1.21144 0.91646 0.90804 0.90764 0.89770 1.45309 1.24420 1.47998 1.14322 1.18103 0.85289 0.84584 0.87493 1.68151 1.17376 1.29370 1.17300 1.24310 0.85559 0.85329 0.97771 1.67314 1.36717 1.27164 1.00428 1.18062 0.91089 0.92638 0.87721 1.41120 1.26189 1.43285 1.06646 0.74771 1.20104 0.93360 1.03014 0.89405 1.19761 0.98772 1.02520 0.91864 1.19609 1.02417 1.09973 0.95721 1.20148 0.95918 0.99264 0.93923 1.21597 0.96612 1.00340 0.97018 1.21534 0.95428 1.00518 0.97707 1.20287 1.00952 0.99497 0.87879 1.21902 0.97400 0.95062 1.00610 1.19918 0.95743 0.96348 0.93955 0.92713 0.92499 0.97430 0.92926 0.94653 0.76054 0.78921 0.90636 0.90872 0.91123 0.91549 0.91256 0.90981 0.90265 0.90657 0.93557 0.94409 0.96133 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 12.82 55.43 0.71 -24.57 16 2 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 3 Si 0.88 20.74 27.95 -169.99 -4.75 15.99 16 4 H -0.26 -5.82 5.57 56.52 0.31 -5.51 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -12.66 5.48 -98.93 -0.54 -13.20 16 8 C 0.02 0.40 5.93 -27.49 -0.16 0.24 16 9 C -0.12 -2.37 5.40 -26.63 -0.14 -2.51 16 10 C 0.16 3.09 2.38 -67.97 -0.16 2.93 16 11 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 12 N -0.69 -11.63 5.20 -53.68 -0.28 -11.91 16 13 C 0.50 8.53 7.52 -154.74 -1.16 7.36 16 14 N -0.59 -10.43 9.36 -13.67 -0.13 -10.56 16 15 C 0.36 5.55 12.24 -92.13 -1.13 4.42 16 16 N -0.59 -9.18 10.47 -13.84 -0.14 -9.32 16 17 C 0.34 5.19 8.48 -155.72 -1.32 3.87 16 18 N -0.57 -6.53 6.03 -8.20 -0.05 -6.58 16 19 H 0.42 3.58 8.96 -40.82 -0.37 3.22 16 20 C 0.05 0.51 7.02 -81.38 -0.57 -0.06 16 21 C -0.12 -1.53 6.12 -102.93 -0.63 -2.16 16 22 C -0.26 -4.12 6.33 -105.16 -0.67 -4.79 16 23 C -0.05 -0.56 5.31 -27.70 -0.15 -0.71 16 24 C -0.12 -0.90 5.92 -26.47 -0.16 -1.06 16 25 C -0.11 -0.75 5.89 -26.53 -0.16 -0.90 16 26 C -0.05 -0.34 6.29 -27.55 -0.17 -0.51 16 27 C -0.11 -2.32 5.52 -26.63 -0.15 -2.46 16 28 C -0.02 -0.51 5.65 -27.48 -0.16 -0.66 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.51 7.19 -51.93 -0.37 1.13 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 5.98 6.51 -40.82 -0.27 5.72 16 35 H 0.19 2.27 8.06 -52.48 -0.42 1.84 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.76 7.17 -51.93 -0.37 0.39 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.04 0.95 4.36 -51.93 -0.23 0.72 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -30.81 362.44 -13.84 -44.64 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.13 Total: 5.06 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -7.52 Total: -8.22 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.11 Total: -62.94 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.75 Total: 15.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.81 -13.84 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.771 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds