Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47345 * 174.66286 * 3 2 1 5 5 H 1.48508 * 109.46987 * 294.66456 * 3 2 1 6 6 H 1.48504 * 109.46754 * 54.66043 * 3 2 1 7 7 C 1.37875 * 119.99876 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85222 * 349.40492 * 7 2 1 9 9 C 1.53230 * 108.53809 * 231.07304 * 8 7 2 10 10 C 1.52962 * 109.40592 * 305.37056 * 9 8 7 11 11 H 1.09001 * 109.41259 * 303.56850 * 10 9 8 12 12 N 1.46495 * 109.41493 * 183.70295 * 10 9 8 13 13 C 1.38325 * 119.99710 * 155.00124 * 12 10 9 14 14 N 1.32961 * 120.79915 * 0.02562 * 13 12 10 15 15 C 1.32073 * 121.04612 * 179.97438 * 14 13 12 16 16 N 1.31543 * 122.67590 * 359.94982 * 15 14 13 17 17 C 1.33165 * 120.76851 * 0.06997 * 16 15 14 18 18 N 1.36885 * 134.19015 * 179.97438 * 17 16 15 19 19 H 0.97001 * 124.96878 * 0.07140 * 18 17 16 20 20 C 1.36881 * 110.06404 * 180.11436 * 18 17 16 21 21 C 1.34715 * 109.51111 * 359.96208 * 20 18 17 22 22 C 1.40347 * 120.79699 * 179.71862 * 13 12 10 23 23 C 1.50692 * 124.64005 * 179.87561 * 21 20 18 24 24 C 1.53359 * 108.46877 * 343.62359 * 23 21 20 25 25 C 1.53140 * 109.30602 * 49.57489 * 24 23 21 26 26 C 1.51115 * 126.79943 * 180.02562 * 20 18 17 27 27 C 1.52967 * 109.81538 * 63.59658 * 10 9 8 28 28 C 1.51275 * 120.84804 * 169.11961 * 7 2 1 29 29 H 0.97003 * 120.00185 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.62633 * 350.78651 * 8 7 2 31 31 H 1.09003 * 109.63213 * 111.35997 * 8 7 2 32 32 H 1.09001 * 109.48200 * 65.34919 * 9 8 7 33 33 H 1.08998 * 109.48592 * 185.37508 * 9 8 7 34 34 H 0.96993 * 120.00540 * 335.00034 * 12 10 9 35 35 H 1.08004 * 118.66045 * 179.97438 * 15 14 13 36 36 H 1.09005 * 109.63384 * 103.31693 * 23 21 20 37 37 H 1.09001 * 109.63385 * 223.92616 * 23 21 20 38 38 H 1.09004 * 109.50330 * 169.52361 * 24 23 21 39 39 H 1.09005 * 109.50172 * 289.62647 * 24 23 21 40 40 H 1.08999 * 109.46232 * 50.01083 * 25 24 23 41 41 H 1.08998 * 109.47060 * 170.00203 * 25 24 23 42 42 H 1.09007 * 109.62204 * 282.89077 * 26 20 18 43 43 H 1.08997 * 109.62853 * 43.45836 * 26 20 18 44 44 H 1.09000 * 109.48067 * 56.38095 * 27 10 9 45 45 H 1.08998 * 109.47740 * 176.41225 * 27 10 9 46 46 H 1.08993 * 109.63156 * 248.64282 * 28 7 2 47 47 H 1.09005 * 109.62633 * 9.21229 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3495 0.1302 5 1 1.9906 2.3386 -1.2724 6 1 1.7952 2.4513 1.1421 7 6 2.0044 -1.1940 0.0005 8 6 1.2868 -2.5039 0.2399 9 6 2.0260 -3.2700 1.3420 10 6 3.4988 -3.4195 0.9569 11 1 3.5716 -3.9123 -0.0126 12 7 4.1866 -4.2275 1.9669 13 6 5.3294 -4.9301 1.6296 14 7 5.8177 -4.8831 0.3938 15 6 6.9087 -5.5516 0.0666 16 7 7.5719 -6.2934 0.9269 17 6 7.1617 -6.4045 2.1889 18 7 7.6235 -7.0798 3.2864 19 1 8.4137 -7.6421 3.3012 20 6 6.8064 -6.8465 4.3595 21 6 5.8055 -6.0230 3.9923 22 6 6.0050 -5.7047 2.5853 23 6 4.7088 -5.5459 4.9090 24 6 4.6856 -6.4478 6.1492 25 6 6.1042 -6.5706 6.7126 26 6 6.9648 -7.4026 5.7556 27 6 4.1559 -2.0406 0.8751 28 6 3.4968 -1.2283 -0.2446 29 1 -0.4850 0.8401 -0.0004 30 1 0.2619 -2.3077 0.5547 31 1 1.2846 -3.0932 -0.6771 32 1 1.9496 -2.7209 2.2804 33 1 1.5792 -4.2571 1.4610 34 1 3.8408 -4.2698 2.8721 35 1 7.2713 -5.4862 -0.9487 36 1 4.9040 -4.5161 5.2085 37 1 3.7497 -5.6054 4.3947 38 1 4.0309 -6.0119 6.9039 39 1 4.3167 -7.4358 5.8737 40 1 6.5392 -5.5770 6.8210 41 1 6.0675 -7.0592 7.6862 42 1 6.6343 -8.4412 5.7756 43 1 8.0104 -7.3425 6.0573 44 1 4.0290 -1.5205 1.8246 45 1 5.2188 -2.1564 0.6632 46 1 3.6992 -1.6993 -1.2064 47 1 3.8918 -0.2123 -0.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167840589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = 39.991157 kcal Electronic energy + Delta-G solvation = -27933.960078 eV Core-core repulsion = 24307.871256 eV Total energy + Delta-G solvation = -3626.088822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89855 -40.23330 -39.12260 -37.22881 -36.17456 -34.10117 -32.99423 -32.42979 -31.44922 -30.32215 -29.77435 -28.53304 -25.45590 -24.59684 -23.76667 -23.34627 -23.01218 -22.27650 -21.12088 -19.78466 -19.51894 -18.19945 -18.07449 -17.41418 -16.82553 -16.52761 -16.39986 -15.67128 -15.46792 -15.18798 -15.05047 -14.77674 -14.60173 -14.38414 -14.30028 -14.13637 -13.98908 -13.82051 -13.70320 -13.51723 -13.02812 -12.76435 -12.66590 -12.54370 -12.04853 -12.00347 -11.86741 -11.71927 -11.66384 -11.53719 -11.22236 -11.18902 -10.86635 -10.60838 -10.44270 -10.05073 -10.02468 -9.65123 -8.35709 -8.16214 -6.08129 0.11895 0.52964 1.38928 1.44261 1.52363 1.60633 1.72098 2.18183 2.43382 3.06831 3.11608 3.43149 3.55961 3.64932 3.87986 3.93972 4.06062 4.08507 4.18832 4.23940 4.25919 4.46318 4.55569 4.57709 4.67553 4.72947 4.75285 4.91461 4.94862 5.00831 5.03020 5.07679 5.09948 5.13689 5.22818 5.27378 5.29843 5.32853 5.44297 5.51090 5.58558 5.61001 5.62470 5.79241 5.81339 5.89157 5.93878 6.24241 6.37179 6.45116 6.81641 6.96386 7.49264 7.50984 8.94595 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.003317 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.194971 B = 8438.275623 C = 9371.442239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.241 1.241 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.497 4.497 8 C 0.014 3.986 9 C -0.104 4.104 10 C 0.177 3.823 11 H 0.067 0.933 12 N -0.690 5.690 13 C 0.477 3.523 14 N -0.618 5.618 15 C 0.348 3.652 16 N -0.590 5.590 17 C 0.318 3.682 18 N -0.554 5.554 19 H 0.430 0.570 20 C 0.068 3.932 21 C -0.149 4.149 22 C -0.275 4.275 23 C -0.055 4.055 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.046 4.046 27 C -0.101 4.101 28 C -0.021 4.021 29 H 0.263 0.737 30 H 0.029 0.971 31 H -0.003 1.003 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.411 0.589 35 H 0.221 0.779 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.017 0.983 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.888 -15.899 14.913 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.165 1.165 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.516 4.516 8 C -0.024 4.024 9 C -0.142 4.142 10 C 0.073 3.927 11 H 0.085 0.915 12 N -0.321 5.321 13 C 0.227 3.773 14 N -0.347 5.347 15 C 0.057 3.943 16 N -0.317 5.317 17 C 0.079 3.921 18 N -0.161 5.161 19 H 0.270 0.730 20 C -0.040 4.040 21 C -0.157 4.157 22 C -0.289 4.289 23 C -0.093 4.093 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.084 4.084 27 C -0.140 4.140 28 C -0.059 4.059 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.250 0.750 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.093 -15.751 13.967 25.903 hybrid contribution -0.118 0.865 0.324 0.931 sum 14.975 -14.886 14.292 25.497 Atomic orbital electron populations 1.70016 1.07671 1.27435 1.51612 1.25567 0.95226 1.01705 0.94860 0.85916 0.80836 0.80064 0.77476 1.16485 1.21037 1.21274 1.20590 0.92377 0.92256 1.46412 1.19241 0.96296 0.93718 0.93153 1.21742 0.93631 0.98848 0.99997 1.20674 0.90997 0.90239 0.90812 0.91471 1.44932 1.24738 1.48343 1.14082 1.18284 0.85553 0.85342 0.88071 1.68128 1.18367 1.30316 1.17908 1.24853 0.85236 0.85247 0.98950 1.67362 1.36607 1.26880 1.00823 1.18369 0.91702 0.93723 0.88316 1.41209 1.26551 1.42554 1.05809 0.73034 1.20841 0.91676 1.00923 0.90513 1.20083 1.00598 1.03974 0.91005 1.19892 1.02409 1.09527 0.97088 1.20192 0.94705 0.99765 0.94644 1.21603 0.97899 0.99768 0.96006 1.21563 0.94273 1.00519 0.98627 1.20515 1.02579 1.00240 0.85079 1.21755 0.97383 0.95505 0.99368 1.19893 0.94379 0.96879 0.94756 0.92825 0.95230 0.98455 0.92755 0.92768 0.75021 0.76277 0.90933 0.91726 0.89886 0.91425 0.91803 0.88424 0.88366 0.88460 0.93635 0.94063 0.96479 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 12.82 21.45 0.27 -54.01 16 2 C 0.02 1.37 5.44 84.66 0.46 1.83 16 3 Si 0.93 42.85 27.95 68.60 1.92 44.77 16 4 H -0.24 -10.40 5.57 99.48 0.55 -9.84 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.50 -26.19 5.48 -16.17 -0.09 -26.27 16 8 C 0.01 0.70 5.93 30.10 0.18 0.88 16 9 C -0.10 -4.22 5.40 30.66 0.17 -4.05 16 10 C 0.18 6.87 2.38 44.97 0.11 6.98 16 11 H 0.07 2.86 7.58 -2.39 -0.02 2.84 16 12 N -0.69 -23.02 5.20 -323.76 -1.68 -24.71 16 13 C 0.48 16.34 7.52 133.42 1.00 17.34 16 14 N -0.62 -21.74 9.36 -197.16 -1.85 -23.59 16 15 C 0.35 10.55 12.24 180.88 2.21 12.76 16 16 N -0.59 -17.91 10.47 -197.69 -2.07 -19.98 16 17 C 0.32 9.24 8.48 133.97 1.14 10.38 16 18 N -0.55 -11.49 6.03 -179.85 -1.08 -12.57 16 19 H 0.43 6.23 8.96 -92.71 -0.83 5.40 16 20 C 0.07 1.27 7.02 41.09 0.29 1.56 16 21 C -0.15 -3.53 6.12 -18.77 -0.11 -3.65 16 22 C -0.28 -8.42 6.33 -20.21 -0.13 -8.55 16 23 C -0.06 -1.05 5.31 29.97 0.16 -0.89 16 24 C -0.12 -1.43 5.92 30.76 0.18 -1.24 16 25 C -0.11 -1.03 5.89 30.73 0.18 -0.85 16 26 C -0.05 -0.45 6.29 30.06 0.19 -0.26 16 27 C -0.10 -4.18 5.52 30.66 0.17 -4.02 16 28 C -0.02 -0.99 5.65 30.11 0.17 -0.82 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.03 1.61 7.19 -2.39 -0.02 1.60 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.41 12.06 6.51 -92.71 -0.60 11.46 16 35 H 0.22 5.01 8.06 -2.91 -0.02 4.98 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.30 7.17 -2.39 -0.02 1.28 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.83 8.12 -2.38 -0.02 0.81 16 40 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 41 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.04 1.88 4.36 -2.38 -0.01 1.87 16 Total: -1.00 -67.86 362.44 1.21 -66.65 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.58 Total: 22.31 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 6.27 Total: 1.13 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -6.41 Total: -134.86 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.92 Total: 44.77 kcal Total: -67.86 1.21 -66.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.645 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds