Wall clock time and date at job start Tue Mar 31 2020 14:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99632 * 2 1 4 4 H 1.48505 * 109.47205 * 239.99935 * 3 2 1 5 5 H 1.48503 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 119.99711 * 3 2 1 7 7 C 1.37868 * 120.00099 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.85301 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53626 * 231.32394 * 8 7 2 10 10 C 1.52953 * 109.40790 * 305.37143 * 9 8 7 11 11 H 1.09004 * 109.41733 * 303.56575 * 10 9 8 12 12 N 1.46493 * 109.41646 * 183.70419 * 10 9 8 13 13 C 1.40108 * 120.00202 * 155.00055 * 12 10 9 14 14 C 1.41250 * 119.77047 * 359.97438 * 13 12 10 15 15 C 1.35783 * 119.75546 * 179.97438 * 14 13 12 16 16 C 1.40959 * 119.31124 * 0.02562 * 15 14 13 17 17 C 1.38126 * 133.60080 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.27795 * 0.02562 * 17 16 15 19 19 C 1.53932 * 113.73186 * 143.27224 * 18 17 16 20 20 N 1.47958 * 86.18213 * 138.08123 * 19 18 17 21 21 C 1.47960 * 90.76300 * 335.31020 * 20 19 18 22 22 N 1.33346 * 107.44080 * 180.26977 * 17 16 15 23 23 C 1.30975 * 109.84465 * 359.59619 * 22 17 16 24 24 N 1.34975 * 109.38174 * 0.41015 * 23 22 17 25 25 C 1.35270 * 119.77146 * 180.02562 * 13 12 10 26 26 C 1.52965 * 109.81416 * 63.59591 * 10 9 8 27 27 C 1.51276 * 120.84704 * 179.97438 * 7 2 1 28 28 H 0.97000 * 120.00551 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.62818 * 111.61163 * 8 7 2 30 30 H 1.08994 * 109.78465 * 351.13474 * 8 7 2 31 31 H 1.09001 * 109.48113 * 185.39268 * 9 8 7 32 32 H 1.09001 * 109.49282 * 65.36249 * 9 8 7 33 33 H 0.97007 * 120.00338 * 335.00226 * 12 10 9 34 34 H 1.08001 * 120.12045 * 359.97219 * 14 13 12 35 35 H 1.08000 * 120.34396 * 180.02562 * 15 14 13 36 36 H 1.09000 * 113.00916 * 11.64092 * 18 17 16 37 37 H 1.09001 * 113.75926 * 252.39722 * 19 18 17 38 38 H 1.08998 * 113.76352 * 23.76076 * 19 18 17 39 39 H 1.00900 * 111.00007 * 222.41991 * 20 19 18 40 40 H 1.09001 * 113.75911 * 270.37393 * 21 20 19 41 41 H 1.09004 * 113.76293 * 139.00416 * 21 20 19 42 42 H 1.08003 * 125.30803 * 180.13761 * 23 22 17 43 43 H 1.08003 * 119.77680 * 359.97438 * 25 13 12 44 44 H 1.09005 * 109.48041 * 56.38863 * 26 10 9 45 45 H 1.09002 * 109.47853 * 176.42117 * 26 10 9 46 46 H 1.09004 * 109.62354 * 248.38638 * 27 7 2 47 47 H 1.08998 * 109.62463 * 8.76741 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8239 -3.3820 1.1363 10 6 3.3407 -3.5064 0.9841 11 1 3.5742 -3.9110 -0.0008 12 7 3.8615 -4.4064 2.0161 13 6 5.0647 -5.0926 1.8050 14 6 5.7713 -4.9134 0.5952 15 6 6.9376 -5.5782 0.3912 16 6 7.4253 -6.4400 1.3944 17 6 8.5456 -7.2410 1.5001 18 6 9.6271 -7.4028 0.4632 19 6 11.0388 -7.5520 1.0585 20 7 11.2502 -8.6034 0.0392 21 6 9.7931 -8.8486 -0.0385 22 7 8.4918 -7.8488 2.6857 23 6 7.4153 -7.4726 3.3299 24 7 6.7194 -6.6017 2.5689 25 6 5.5410 -5.9229 2.7608 26 6 3.9915 -2.1303 1.1341 27 6 3.5171 -1.2163 0.0000 28 1 -0.4851 0.8400 -0.0004 29 1 1.4193 -3.0197 -0.9525 30 1 0.2031 -2.3437 0.1601 31 1 1.3716 -4.3728 1.0919 32 1 1.5915 -2.9189 2.0953 33 1 3.3733 -4.5274 2.8456 34 1 5.3854 -4.2501 -0.1648 35 1 7.4859 -5.4479 -0.5301 36 1 9.5641 -6.6653 -0.3369 37 1 11.6688 -6.6733 0.9202 38 1 11.0464 -7.9252 2.0826 39 1 11.7301 -9.3983 0.4339 40 1 9.4363 -9.6012 0.6647 41 1 9.4277 -9.0059 -1.0534 42 1 7.1270 -7.8101 4.3145 43 1 4.9914 -6.0520 3.6816 44 1 3.7079 -1.6966 2.0931 45 1 5.0756 -2.2339 1.0883 46 1 3.8772 -1.6005 -0.9545 47 1 3.8982 -0.2070 0.1556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167843947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:49 Heat of formation + Delta-G solvation = 109.307923 kcal Electronic energy + Delta-G solvation = -27049.739806 eV Core-core repulsion = 23426.656784 eV Total energy + Delta-G solvation = -3623.083022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.68677 -39.40016 -38.64396 -36.70435 -34.11166 -33.32846 -31.95483 -30.02436 -29.52774 -29.03662 -26.97384 -26.09063 -25.98097 -23.75595 -22.66678 -21.73479 -21.59001 -21.32394 -19.64377 -19.25603 -17.73482 -17.28559 -16.77942 -16.18761 -15.95686 -15.76665 -15.47822 -14.82996 -14.56765 -14.28915 -14.16874 -13.88509 -13.54157 -13.19345 -12.94946 -12.73623 -12.68294 -12.34158 -12.18956 -12.12808 -11.69286 -11.52398 -11.33025 -11.24629 -11.17319 -10.91492 -10.77511 -10.38016 -10.32265 -10.24377 -10.10946 -10.01798 -9.67981 -9.12751 -9.11988 -8.84273 -8.59752 -7.87383 -7.05610 -6.22688 -4.14830 0.88127 1.52726 2.68102 3.00311 3.20063 3.28009 3.28336 3.51202 3.66516 3.92916 4.27759 4.43701 4.50056 4.60079 4.72659 4.88487 4.92297 5.04012 5.13737 5.24274 5.26757 5.30128 5.42698 5.46395 5.61935 5.65587 5.66651 5.81682 5.89857 5.92645 5.98437 6.08915 6.19975 6.29028 6.41629 6.50693 6.53838 6.56330 6.68357 6.69227 6.85314 6.91252 7.02857 7.22614 7.24028 7.44523 7.52822 7.55862 7.67945 7.84272 7.95138 8.23303 8.82573 9.41645 10.86771 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.002451 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.619309 B =11421.346576 C =11987.364888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.494 4.494 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.160 3.840 11 H 0.070 0.930 12 N -0.731 5.731 13 C 0.228 3.772 14 C -0.151 4.151 15 C -0.045 4.045 16 C -0.013 4.013 17 C 0.011 3.989 18 C -0.025 4.025 19 C 0.018 3.982 20 N -0.640 5.640 21 C 0.017 3.983 22 N -0.460 5.460 23 C 0.125 3.875 24 N -0.323 5.323 25 C -0.104 4.104 26 C -0.120 4.120 27 C -0.009 4.009 28 H 0.266 0.734 29 H 0.006 0.994 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.318 0.682 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.203 0.797 43 H 0.154 0.846 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.019 0.981 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.787 -13.515 3.871 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.513 4.513 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.057 3.943 11 H 0.089 0.911 12 N -0.357 5.357 13 C 0.120 3.880 14 C -0.174 4.174 15 C -0.065 4.065 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.045 4.045 19 C -0.113 4.113 20 N -0.264 5.264 21 C -0.113 4.113 22 N -0.175 5.175 23 C -0.150 4.150 24 N 0.009 4.991 25 C -0.231 4.231 26 C -0.159 4.159 27 C -0.047 4.047 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.220 0.780 43 H 0.172 0.828 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.248 -13.448 3.442 19.892 hybrid contribution -0.836 1.051 1.241 1.828 sum 13.412 -12.398 4.683 18.855 Atomic orbital electron populations 1.69809 1.06166 1.27252 1.49237 1.24840 0.94740 0.98622 0.94339 0.86659 0.79434 0.82974 0.79034 1.19921 1.21785 1.20003 1.19984 0.89217 0.91482 1.50573 1.19331 0.98824 0.92721 0.91527 1.21916 0.92079 0.98738 1.02495 1.21076 0.95053 0.88633 0.89559 0.91149 1.45283 1.21263 1.47633 1.21530 1.17117 0.87675 0.90737 0.92476 1.21036 0.96037 1.02907 0.97410 1.20354 0.95271 0.93569 0.97354 1.19303 0.97122 1.06362 0.89839 1.20430 0.96470 1.00616 0.95284 1.21146 0.90829 0.97897 0.94606 1.23710 0.95315 0.96783 0.95467 1.66889 1.09564 1.11357 1.38608 1.23730 0.89637 0.96339 1.01631 1.69710 1.18347 1.23846 1.05620 1.24513 0.91813 0.98488 1.00139 1.42253 1.15125 1.28108 1.13576 1.20251 0.92198 1.07304 1.03386 1.22043 0.96948 0.95590 1.01304 1.19596 0.96760 0.94737 0.93636 0.92383 0.97589 0.92048 0.94496 0.92663 0.76805 0.83871 0.83667 0.87503 0.89717 0.90546 0.87014 0.91141 0.89568 0.78014 0.82832 0.92685 0.94619 0.96296 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 12.73 55.43 0.71 -23.65 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.37 26.80 -169.99 -4.56 15.81 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.49 -12.06 5.51 -98.92 -0.55 -12.60 16 8 C 0.01 0.32 5.96 -27.48 -0.16 0.15 16 9 C -0.11 -2.10 5.40 -26.63 -0.14 -2.25 16 10 C 0.16 2.63 2.05 -67.98 -0.14 2.49 16 11 H 0.07 1.17 6.48 -51.93 -0.34 0.84 16 12 N -0.73 -9.94 5.25 -52.39 -0.28 -10.22 16 13 C 0.23 3.03 6.59 -83.99 -0.55 2.48 16 14 C -0.15 -1.97 8.79 -39.32 -0.35 -2.31 16 15 C -0.05 -0.54 10.09 -39.43 -0.40 -0.94 16 16 C -0.01 -0.18 6.74 -84.11 -0.57 -0.75 16 17 C 0.01 0.14 6.27 -81.98 -0.51 -0.38 16 18 C -0.02 -0.26 4.40 -90.84 -0.40 -0.66 16 19 C 0.02 0.18 8.45 -2.77 -0.02 0.15 16 20 N -0.64 -6.14 8.53 -117.08 -1.00 -7.14 16 21 C 0.02 0.17 8.46 -2.77 -0.02 0.15 16 22 N -0.46 -6.13 10.82 -10.16 -0.11 -6.24 16 23 C 0.13 1.52 12.75 -90.04 -1.15 0.37 16 24 N -0.32 -4.20 2.95 -62.20 -0.18 -4.38 16 25 C -0.10 -1.29 10.79 -16.14 -0.17 -1.46 16 26 C -0.12 -2.18 5.44 -26.65 -0.14 -2.32 16 27 C -0.01 -0.20 5.59 -27.50 -0.15 -0.35 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 1.55 7.08 -51.93 -0.37 1.19 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.40 4.79 8.60 -40.82 -0.35 4.44 16 34 H 0.14 1.85 6.23 -52.49 -0.33 1.52 16 35 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.81 7.78 -51.93 -0.40 0.40 16 39 H 0.32 2.60 8.91 -39.29 -0.35 2.25 16 40 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.20 1.75 8.06 -52.48 -0.42 1.32 16 43 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.60 7.74 -51.93 -0.40 0.20 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -28.08 370.85 -12.38 -40.46 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.01 Total: 6.08 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -5.54 Total: -16.30 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.86 Total: -51.63 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.56 Total: 15.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.08 -12.38 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.763 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds