Wall clock time and date at job start Tue Mar 31 2020 14:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99632 * 2 1 4 4 H 1.48505 * 109.47205 * 239.99935 * 3 2 1 5 5 H 1.48503 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 119.99711 * 3 2 1 7 7 C 1.37868 * 120.00099 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.85301 * 359.97438 * 7 2 1 9 9 C 1.53233 * 108.53626 * 231.32394 * 8 7 2 10 10 C 1.52953 * 109.40790 * 305.37143 * 9 8 7 11 11 H 1.09004 * 109.41733 * 303.56575 * 10 9 8 12 12 N 1.46493 * 109.41646 * 183.70419 * 10 9 8 13 13 C 1.40108 * 120.00202 * 155.00055 * 12 10 9 14 14 C 1.41250 * 119.77047 * 359.97438 * 13 12 10 15 15 C 1.35783 * 119.75546 * 179.97438 * 14 13 12 16 16 C 1.40959 * 119.31124 * 0.02562 * 15 14 13 17 17 C 1.38126 * 133.60080 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.27795 * 0.02562 * 17 16 15 19 19 C 1.53932 * 113.73186 * 143.27224 * 18 17 16 20 20 N 1.47958 * 86.18213 * 138.08123 * 19 18 17 21 21 C 1.47960 * 90.76300 * 335.31020 * 20 19 18 22 22 N 1.33346 * 107.44080 * 180.26977 * 17 16 15 23 23 C 1.30975 * 109.84465 * 359.59619 * 22 17 16 24 24 N 1.34975 * 109.38174 * 0.41015 * 23 22 17 25 25 C 1.35270 * 119.77146 * 180.02562 * 13 12 10 26 26 C 1.52965 * 109.81416 * 63.59591 * 10 9 8 27 27 C 1.51276 * 120.84704 * 179.97438 * 7 2 1 28 28 H 0.97000 * 120.00551 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.62818 * 111.61163 * 8 7 2 30 30 H 1.08994 * 109.78465 * 351.13474 * 8 7 2 31 31 H 1.09001 * 109.48113 * 185.39268 * 9 8 7 32 32 H 1.09001 * 109.49282 * 65.36249 * 9 8 7 33 33 H 0.97007 * 120.00338 * 335.00226 * 12 10 9 34 34 H 1.08001 * 120.12045 * 359.97219 * 14 13 12 35 35 H 1.08000 * 120.34396 * 180.02562 * 15 14 13 36 36 H 1.09000 * 113.00916 * 11.64092 * 18 17 16 37 37 H 1.09001 * 113.75926 * 252.39722 * 19 18 17 38 38 H 1.08998 * 113.76352 * 23.76076 * 19 18 17 39 39 H 1.00900 * 111.00007 * 222.41991 * 20 19 18 40 40 H 1.09001 * 113.75911 * 270.37393 * 21 20 19 41 41 H 1.09004 * 113.76293 * 139.00416 * 21 20 19 42 42 H 1.08003 * 125.30803 * 180.13761 * 23 22 17 43 43 H 1.08003 * 119.77680 * 359.97438 * 25 13 12 44 44 H 1.09005 * 109.48041 * 56.38863 * 26 10 9 45 45 H 1.09002 * 109.47853 * 176.42117 * 26 10 9 46 46 H 1.09004 * 109.62354 * 248.38638 * 27 7 2 47 47 H 1.08998 * 109.62463 * 8.76741 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8239 -3.3820 1.1363 10 6 3.3407 -3.5064 0.9841 11 1 3.5742 -3.9110 -0.0008 12 7 3.8615 -4.4064 2.0161 13 6 5.0647 -5.0926 1.8050 14 6 5.7713 -4.9134 0.5952 15 6 6.9376 -5.5782 0.3912 16 6 7.4253 -6.4400 1.3944 17 6 8.5456 -7.2410 1.5001 18 6 9.6271 -7.4028 0.4632 19 6 11.0388 -7.5520 1.0585 20 7 11.2502 -8.6034 0.0392 21 6 9.7931 -8.8486 -0.0385 22 7 8.4918 -7.8488 2.6857 23 6 7.4153 -7.4726 3.3299 24 7 6.7194 -6.6017 2.5689 25 6 5.5410 -5.9229 2.7608 26 6 3.9915 -2.1303 1.1341 27 6 3.5171 -1.2163 0.0000 28 1 -0.4851 0.8400 -0.0004 29 1 1.4193 -3.0197 -0.9525 30 1 0.2031 -2.3437 0.1601 31 1 1.3716 -4.3728 1.0919 32 1 1.5915 -2.9189 2.0953 33 1 3.3733 -4.5274 2.8456 34 1 5.3854 -4.2501 -0.1648 35 1 7.4859 -5.4479 -0.5301 36 1 9.5641 -6.6653 -0.3369 37 1 11.6688 -6.6733 0.9202 38 1 11.0464 -7.9252 2.0826 39 1 11.7301 -9.3983 0.4339 40 1 9.4363 -9.6012 0.6647 41 1 9.4277 -9.0059 -1.0534 42 1 7.1270 -7.8101 4.3145 43 1 4.9914 -6.0520 3.6816 44 1 3.7079 -1.6966 2.0931 45 1 5.0756 -2.2339 1.0883 46 1 3.8772 -1.6005 -0.9545 47 1 3.8982 -0.2070 0.1556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167843947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:48 Heat of formation + Delta-G solvation = 93.719224 kcal Electronic energy + Delta-G solvation = -27050.415782 eV Core-core repulsion = 23426.656784 eV Total energy + Delta-G solvation = -3623.758998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61435 -40.26713 -39.75285 -37.98916 -35.47904 -34.25196 -33.58681 -31.57206 -30.59595 -30.23315 -28.22390 -27.02583 -26.84730 -24.72350 -24.09164 -23.20304 -22.59500 -22.55598 -21.13186 -20.10926 -18.68062 -18.41854 -17.99186 -17.35572 -16.96799 -16.73622 -16.44636 -16.37008 -16.00572 -15.17884 -15.15121 -15.03161 -14.70264 -14.58760 -14.35341 -14.02381 -13.89455 -13.58956 -13.48446 -13.19130 -13.04411 -12.75644 -12.61887 -12.53292 -12.45533 -12.14475 -12.03151 -11.96170 -11.71878 -11.58560 -11.26365 -11.06405 -11.03768 -10.82015 -10.55860 -10.49421 -9.88740 -8.89586 -8.18126 -8.01858 -6.11460 -0.04069 0.56254 1.38392 1.40663 1.47280 1.73141 2.08470 2.39472 2.56403 2.60524 3.11809 3.16193 3.60777 3.62270 3.78398 3.92114 3.94625 4.01957 4.07530 4.20204 4.28134 4.32914 4.45481 4.51171 4.52124 4.59625 4.72137 4.87370 4.88798 4.90566 4.96933 4.97979 5.06264 5.08059 5.13731 5.16010 5.22069 5.24257 5.30020 5.32989 5.59084 5.60426 5.63168 5.68565 5.76247 5.84271 6.18772 6.32394 6.33295 6.47252 6.82808 6.95623 7.01778 7.46763 8.92652 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.002451 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.619309 B =11421.346576 C =11987.364888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.023 3.977 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.497 4.497 8 C 0.009 3.991 9 C -0.103 4.103 10 C 0.177 3.823 11 H 0.073 0.927 12 N -0.727 5.727 13 C 0.215 3.785 14 C -0.167 4.167 15 C -0.040 4.040 16 C -0.036 4.036 17 C 0.007 3.993 18 C -0.029 4.029 19 C 0.022 3.978 20 N -0.642 5.642 21 C 0.022 3.978 22 N -0.481 5.481 23 C 0.125 3.875 24 N -0.333 5.333 25 C -0.098 4.098 26 C -0.111 4.111 27 C -0.014 4.014 28 H 0.262 0.738 29 H 0.004 0.996 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.406 0.594 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.326 0.674 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.177 0.823 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.028 0.972 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -14.674 4.366 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.517 4.517 8 C -0.029 4.029 9 C -0.141 4.141 10 C 0.072 3.928 11 H 0.091 0.909 12 N -0.355 5.355 13 C 0.108 3.892 14 C -0.190 4.190 15 C -0.060 4.060 16 C -0.148 4.148 17 C -0.131 4.131 18 C -0.049 4.049 19 C -0.109 4.109 20 N -0.267 5.267 21 C -0.109 4.109 22 N -0.196 5.196 23 C -0.150 4.150 24 N 0.000 5.000 25 C -0.224 4.224 26 C -0.150 4.150 27 C -0.052 4.052 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.242 0.758 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.249 0.751 43 H 0.194 0.806 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 16.473 -14.633 3.942 22.384 hybrid contribution -1.432 1.262 1.094 2.200 sum 15.041 -13.371 5.036 20.746 Atomic orbital electron populations 1.69948 1.07562 1.27444 1.52061 1.25556 0.95290 1.01592 0.95104 0.85873 0.78348 0.79814 0.79404 1.19148 1.22445 1.19267 1.20638 0.91210 0.91799 1.48032 1.19295 0.97065 0.93364 0.93198 1.21680 0.93834 0.98587 0.99995 1.20647 0.93175 0.88397 0.90588 0.90927 1.44876 1.21806 1.47605 1.21250 1.17182 0.87602 0.91358 0.93061 1.21104 0.96631 1.03658 0.97569 1.20612 0.94958 0.92555 0.97872 1.19624 0.97617 1.07070 0.90466 1.20785 0.96746 1.00108 0.95455 1.21287 0.90519 0.98617 0.94505 1.23653 0.95109 0.97078 0.95063 1.66884 1.09518 1.11741 1.38549 1.23677 0.89722 0.95645 1.01818 1.69741 1.19140 1.24551 1.06148 1.25209 0.91222 0.97597 1.00937 1.42420 1.15408 1.28469 1.13747 1.20549 0.91828 1.06206 1.03858 1.21909 0.98154 0.95775 0.99211 1.19642 0.94566 0.95569 0.95407 0.92885 0.97713 0.95437 0.92639 0.93497 0.75818 0.83949 0.81393 0.86561 0.89112 0.91370 0.86112 0.91908 0.88758 0.75097 0.80586 0.93781 0.92710 0.95350 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.76 12.73 21.44 0.27 -52.49 16 2 C 0.02 1.21 5.46 84.65 0.46 1.67 16 3 Si 0.94 42.01 26.80 68.60 1.84 43.85 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.50 -24.34 5.51 -16.17 -0.09 -24.43 16 8 C 0.01 0.40 5.96 30.11 0.18 0.58 16 9 C -0.10 -3.69 5.40 30.66 0.17 -3.53 16 10 C 0.18 5.46 2.05 44.97 0.09 5.55 16 11 H 0.07 2.26 6.48 -2.38 -0.02 2.24 16 12 N -0.73 -17.98 5.25 -319.65 -1.68 -19.66 16 13 C 0.21 5.16 6.59 37.87 0.25 5.41 16 14 C -0.17 -3.95 8.79 22.44 0.20 -3.76 16 15 C -0.04 -0.86 10.09 22.37 0.23 -0.64 16 16 C -0.04 -0.87 6.74 38.81 0.26 -0.61 16 17 C 0.01 0.17 6.27 42.30 0.27 0.44 16 18 C -0.03 -0.57 4.40 -10.89 -0.05 -0.62 16 19 C 0.02 0.39 8.45 86.40 0.73 1.12 16 20 N -0.64 -11.17 8.53 -524.33 -4.47 -15.64 16 21 C 0.02 0.39 8.46 86.41 0.73 1.12 16 22 N -0.48 -11.93 10.82 -186.07 -2.01 -13.94 16 23 C 0.12 2.74 12.75 180.15 2.30 5.03 16 24 N -0.33 -7.83 2.95 -350.70 -1.03 -8.86 16 25 C -0.10 -2.14 10.79 83.14 0.90 -1.25 16 26 C -0.11 -3.83 5.44 30.65 0.17 -3.66 16 27 C -0.01 -0.56 5.59 30.09 0.17 -0.40 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.03 1.43 7.08 -2.39 -0.02 1.41 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.41 8.74 8.60 -92.70 -0.80 7.94 16 34 H 0.14 3.35 6.23 -2.91 -0.02 3.33 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.35 7.78 -2.39 -0.02 1.33 16 39 H 0.33 4.81 8.91 -89.69 -0.80 4.01 16 40 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 41 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.23 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 44 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 46 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.02 0.97 5.17 -2.39 -0.01 0.96 16 Total: -1.00 -60.58 370.85 -0.73 -61.30 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.59 Total: 23.40 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 6.95 Total: -17.96 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -8.93 Total: -110.60 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.84 Total: 43.85 kcal Total: -60.58 -0.73 -61.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.023 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds