Wall clock time and date at job start Tue Mar 31 2020 14:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47052 * 269.99992 * 3 2 1 5 5 H 1.48498 * 109.47105 * 29.99941 * 3 2 1 6 6 H 1.48504 * 109.46981 * 150.00179 * 3 2 1 7 7 C 1.37877 * 119.99793 * 180.02562 * 2 1 3 8 8 C 1.51275 * 120.84578 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53542 * 231.31966 * 8 7 2 10 10 C 1.52956 * 109.40920 * 305.37746 * 9 8 7 11 11 H 1.09003 * 109.35658 * 303.53064 * 10 9 8 12 12 N 1.46496 * 109.41665 * 183.69921 * 10 9 8 13 13 C 1.38333 * 119.99528 * 84.64958 * 12 10 9 14 14 N 1.32994 * 120.83763 * 0.16094 * 13 12 10 15 15 C 1.32085 * 121.02681 * 180.27954 * 14 13 12 16 16 C 1.50697 * 118.64023 * 179.79643 * 15 14 13 17 17 C 1.53003 * 109.47004 * 269.72916 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28325 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 N 1.31549 * 122.71869 * 359.50909 * 15 14 13 21 21 C 1.33204 * 120.70972 * 0.26203 * 20 15 14 22 22 N 1.36773 * 134.29801 * 179.97438 * 21 20 15 23 23 H 0.96998 * 124.99004 * 359.95888 * 22 21 20 24 24 C 1.37099 * 110.02391 * 180.02562 * 22 21 20 25 25 C 1.34296 * 109.80833 * 359.97438 * 24 22 21 26 26 C 1.40301 * 120.83535 * 180.02562 * 13 12 10 27 27 C 1.52962 * 109.81595 * 63.59553 * 10 9 8 28 28 C 1.51266 * 120.85313 * 359.97438 * 7 2 1 29 29 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.63055 * 351.03955 * 8 7 2 31 31 H 1.08999 * 109.62138 * 111.61484 * 8 7 2 32 32 H 1.08998 * 109.48074 * 185.39460 * 9 8 7 33 33 H 1.09001 * 109.47902 * 65.35254 * 9 8 7 34 34 H 0.96991 * 120.00338 * 264.64885 * 12 10 9 35 35 H 1.08999 * 109.47487 * 149.72536 * 16 15 14 36 36 H 1.09005 * 109.47152 * 29.72515 * 16 15 14 37 37 H 1.09002 * 115.54973 * 330.58108 * 17 16 15 38 38 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 39 39 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 40 40 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 41 41 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 42 42 H 1.08000 * 125.09297 * 180.02562 * 24 22 21 43 43 H 1.08002 * 126.59619 * 180.02562 * 25 24 22 44 44 H 1.08996 * 109.48222 * 56.38438 * 27 10 9 45 45 H 1.08998 * 109.48156 * 176.41269 * 27 10 9 46 46 H 1.09003 * 109.62459 * 8.96941 * 28 7 2 47 47 H 1.08994 * 109.62978 * 248.39655 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9911 -2.1308 -1.1345 10 6 3.3403 -3.5068 -0.9841 11 1 3.5739 -3.9111 0.0009 12 7 3.8606 -4.4070 -2.0160 13 6 5.0485 -5.0846 -1.8078 14 7 5.7301 -4.9335 -0.6759 15 6 6.8676 -5.5744 -0.4754 16 6 7.5979 -5.3599 0.8252 17 6 8.5737 -4.1910 0.6754 18 6 8.3292 -2.9510 1.5377 19 6 9.4975 -3.8861 1.8564 20 7 7.3864 -6.3963 -1.3618 21 6 6.7754 -6.6166 -2.5247 22 7 7.0532 -7.3895 -3.6184 23 1 7.8333 -7.9579 -3.7141 24 6 6.0679 -7.2418 -4.5602 25 6 5.1364 -6.3836 -4.1136 26 6 5.5631 -5.9506 -2.7843 27 6 1.8233 -3.3823 -1.1358 28 6 1.2677 -2.5152 -0.0005 29 1 -0.4849 0.8400 0.0004 30 1 3.8983 -0.2078 -0.1590 31 1 3.8771 -1.6007 0.9544 32 1 5.0752 -2.2344 -1.0890 33 1 3.7071 -1.6973 -2.0935 34 1 3.3721 -4.5280 -2.8452 35 1 8.1500 -6.2631 1.0852 36 1 6.8789 -5.1343 1.6128 37 1 8.9713 -4.0361 -0.3276 38 1 8.5658 -1.9803 1.1019 39 1 7.4727 -2.9676 2.2116 40 1 9.4097 -4.5180 2.7402 41 1 10.5028 -3.5306 1.6302 42 1 6.0440 -7.7413 -5.5174 43 1 4.2439 -6.0727 -4.6363 44 1 1.5907 -2.9192 -2.0946 45 1 1.3711 -4.3730 -1.0913 46 1 0.2036 -2.3409 -0.1602 47 1 1.4198 -3.0193 0.9538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:06 Heat of formation + Delta-G solvation = 91.931657 kcal Electronic energy + Delta-G solvation = -27731.469792 eV Core-core repulsion = 24107.633279 eV Total energy + Delta-G solvation = -3623.836513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63872 -38.90084 -37.79162 -36.97893 -34.87315 -32.45272 -31.55040 -30.76404 -30.23741 -29.57738 -27.57420 -26.66895 -23.40539 -22.53296 -22.26178 -21.65557 -21.35835 -20.56566 -20.42860 -19.55127 -18.81157 -17.00492 -16.30462 -16.07359 -15.52048 -15.43271 -15.19632 -14.42218 -14.26032 -14.06294 -13.66803 -13.43660 -13.29310 -13.07863 -13.01965 -12.67794 -12.53579 -12.34241 -12.07859 -11.78971 -11.45734 -11.43866 -11.12227 -10.90372 -10.73661 -10.58701 -10.54489 -10.17751 -10.04255 -9.94830 -9.86133 -9.57456 -9.04614 -8.95197 -8.86082 -8.75595 -8.49670 -8.45262 -7.33091 -6.09401 -3.99512 1.23241 1.73435 2.66900 2.73776 3.27927 3.37205 3.39865 3.48535 3.83082 4.16645 4.29626 4.40046 4.65639 4.77373 4.86872 4.96070 5.03910 5.12337 5.17960 5.21148 5.40329 5.60242 5.65231 5.69223 5.77275 5.82146 5.89040 5.92910 6.00891 6.18097 6.24951 6.26104 6.32926 6.40055 6.51053 6.64503 6.75026 6.81822 6.93235 6.98698 7.03996 7.09447 7.15738 7.41951 7.47842 7.59902 7.68257 7.73128 7.83257 8.01498 8.39499 8.72697 8.97722 9.56199 11.00263 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.004003 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.534975 B = 6993.765530 C = 8898.173837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.487 4.487 8 C -0.011 4.011 9 C -0.110 4.110 10 C 0.161 3.839 11 H 0.083 0.917 12 N -0.691 5.691 13 C 0.497 3.503 14 N -0.584 5.584 15 C 0.391 3.609 16 C -0.015 4.015 17 C -0.139 4.139 18 C -0.171 4.171 19 C -0.180 4.180 20 N -0.584 5.584 21 C 0.343 3.657 22 N -0.574 5.574 23 H 0.417 0.583 24 C 0.023 3.977 25 C -0.158 4.158 26 C -0.279 4.279 27 C -0.116 4.116 28 C 0.015 3.985 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.020 0.980 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.404 0.596 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.175 0.825 43 H 0.147 0.853 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.060 0.940 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.303 -13.156 -5.545 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.506 4.506 8 C -0.049 4.049 9 C -0.150 4.150 10 C 0.058 3.942 11 H 0.102 0.898 12 N -0.319 5.319 13 C 0.247 3.753 14 N -0.312 5.312 15 C 0.120 3.880 16 C -0.054 4.054 17 C -0.158 4.158 18 C -0.208 4.208 19 C -0.217 4.217 20 N -0.311 5.311 21 C 0.105 3.895 22 N -0.181 5.181 23 H 0.254 0.746 24 C -0.101 4.101 25 C -0.184 4.184 26 C -0.293 4.293 27 C -0.154 4.154 28 C -0.023 4.023 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.192 0.808 43 H 0.164 0.836 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 14.581 -12.892 -4.667 20.015 hybrid contribution 0.142 0.495 -1.522 1.606 sum 14.723 -12.397 -6.189 20.218 Atomic orbital electron populations 1.69834 1.06153 1.26895 1.50029 1.24832 0.94686 0.98545 0.94584 0.86675 0.80047 0.83342 0.78400 1.20529 1.21692 1.19105 1.20062 0.89462 0.91390 1.49718 1.19695 0.96389 0.94897 0.93928 1.21893 0.97428 0.95151 1.00494 1.21115 0.94014 0.88816 0.90243 0.89845 1.45181 1.20155 1.45209 1.21307 1.18070 0.85771 0.84606 0.86900 1.67993 1.10798 1.30831 1.21606 1.22275 0.86965 0.85336 0.93438 1.19890 0.96218 0.98126 0.91169 1.22009 1.00789 0.96793 0.96230 1.23056 1.00019 0.94612 1.03156 1.22975 0.95392 1.03979 0.99390 1.67132 1.37222 1.24844 1.01946 1.18087 0.91079 0.91957 0.88375 1.41401 1.23291 1.40240 1.13202 0.74587 1.21695 0.90116 1.03380 0.94947 1.21451 1.01057 1.01729 0.94184 1.19896 1.01467 1.08938 0.99016 1.21964 0.92569 0.98573 1.02343 1.19330 0.98635 0.92766 0.91601 0.92639 0.95273 0.96127 0.94304 0.93503 0.75997 0.89260 0.88936 0.88216 0.89013 0.88147 0.88734 0.89081 0.80808 0.83576 0.92854 0.94697 0.92167 0.97514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 12.73 55.43 0.71 -24.65 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.12 27.27 -169.99 -4.64 16.48 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.18 6.46 56.52 0.37 -5.82 16 7 C -0.49 -12.63 5.51 -98.92 -0.55 -13.18 16 8 C -0.01 -0.26 5.59 -27.48 -0.15 -0.41 16 9 C -0.11 -2.30 5.51 -26.63 -0.15 -2.45 16 10 C 0.16 3.10 2.38 -67.97 -0.16 2.94 16 11 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 12 N -0.69 -11.44 5.20 -53.69 -0.28 -11.72 16 13 C 0.50 8.49 7.52 -154.72 -1.16 7.33 16 14 N -0.58 -10.33 9.25 -9.83 -0.09 -10.42 16 15 C 0.39 6.27 6.84 -157.16 -1.07 5.19 16 16 C -0.01 -0.19 5.91 -27.88 -0.16 -0.36 16 17 C -0.14 -1.71 5.72 -90.61 -0.52 -2.23 16 18 C -0.17 -2.05 10.18 -26.73 -0.27 -2.32 16 19 C -0.18 -1.82 10.25 -26.73 -0.27 -2.09 16 20 N -0.58 -9.22 10.35 -10.04 -0.10 -9.33 16 21 C 0.34 5.11 8.48 -155.85 -1.32 3.78 16 22 N -0.57 -6.13 6.03 -12.14 -0.07 -6.20 16 23 H 0.42 3.21 8.96 -40.82 -0.37 2.84 16 24 C 0.02 0.21 11.83 -16.59 -0.20 0.02 16 25 C -0.16 -1.84 10.98 -37.79 -0.41 -2.25 16 26 C -0.28 -4.28 6.32 -105.00 -0.66 -4.94 16 27 C -0.12 -2.36 5.40 -26.61 -0.14 -2.50 16 28 C 0.01 0.35 5.97 -27.46 -0.16 0.19 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.68 4.78 -51.93 -0.25 0.43 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 5.81 8.53 -40.82 -0.35 5.46 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.18 7.88 -51.93 -0.41 0.77 16 37 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 47 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -30.75 378.11 -13.47 -44.22 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.21 Total: 7.23 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -7.48 Total: -11.31 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.16 Total: -62.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.64 Total: 16.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.75 -13.47 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.153 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds