Wall clock time and date at job start Tue Mar 31 2020 14:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47052 * 269.99992 * 3 2 1 5 5 H 1.48498 * 109.47105 * 29.99941 * 3 2 1 6 6 H 1.48504 * 109.46981 * 150.00179 * 3 2 1 7 7 C 1.37877 * 119.99793 * 180.02562 * 2 1 3 8 8 C 1.51275 * 120.84578 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53542 * 231.31966 * 8 7 2 10 10 C 1.52956 * 109.40920 * 305.37746 * 9 8 7 11 11 H 1.09003 * 109.35658 * 303.53064 * 10 9 8 12 12 N 1.46496 * 109.41665 * 183.69921 * 10 9 8 13 13 C 1.38333 * 119.99528 * 84.64958 * 12 10 9 14 14 N 1.32994 * 120.83763 * 0.16094 * 13 12 10 15 15 C 1.32085 * 121.02681 * 180.27954 * 14 13 12 16 16 C 1.50697 * 118.64023 * 179.79643 * 15 14 13 17 17 C 1.53003 * 109.47004 * 269.72916 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28325 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 N 1.31549 * 122.71869 * 359.50909 * 15 14 13 21 21 C 1.33204 * 120.70972 * 0.26203 * 20 15 14 22 22 N 1.36773 * 134.29801 * 179.97438 * 21 20 15 23 23 H 0.96998 * 124.99004 * 359.95888 * 22 21 20 24 24 C 1.37099 * 110.02391 * 180.02562 * 22 21 20 25 25 C 1.34296 * 109.80833 * 359.97438 * 24 22 21 26 26 C 1.40301 * 120.83535 * 180.02562 * 13 12 10 27 27 C 1.52962 * 109.81595 * 63.59553 * 10 9 8 28 28 C 1.51266 * 120.85313 * 359.97438 * 7 2 1 29 29 H 0.96997 * 119.99634 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.63055 * 351.03955 * 8 7 2 31 31 H 1.08999 * 109.62138 * 111.61484 * 8 7 2 32 32 H 1.08998 * 109.48074 * 185.39460 * 9 8 7 33 33 H 1.09001 * 109.47902 * 65.35254 * 9 8 7 34 34 H 0.96991 * 120.00338 * 264.64885 * 12 10 9 35 35 H 1.08999 * 109.47487 * 149.72536 * 16 15 14 36 36 H 1.09005 * 109.47152 * 29.72515 * 16 15 14 37 37 H 1.09002 * 115.54973 * 330.58108 * 17 16 15 38 38 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 39 39 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 40 40 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 41 41 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 42 42 H 1.08000 * 125.09297 * 180.02562 * 24 22 21 43 43 H 1.08002 * 126.59619 * 180.02562 * 25 24 22 44 44 H 1.08996 * 109.48222 * 56.38438 * 27 10 9 45 45 H 1.08998 * 109.48156 * 176.41269 * 27 10 9 46 46 H 1.09003 * 109.62459 * 8.96941 * 28 7 2 47 47 H 1.08994 * 109.62978 * 248.39655 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9911 -2.1308 -1.1345 10 6 3.3403 -3.5068 -0.9841 11 1 3.5739 -3.9111 0.0009 12 7 3.8606 -4.4070 -2.0160 13 6 5.0485 -5.0846 -1.8078 14 7 5.7301 -4.9335 -0.6759 15 6 6.8676 -5.5744 -0.4754 16 6 7.5979 -5.3599 0.8252 17 6 8.5737 -4.1910 0.6754 18 6 8.3292 -2.9510 1.5377 19 6 9.4975 -3.8861 1.8564 20 7 7.3864 -6.3963 -1.3618 21 6 6.7754 -6.6166 -2.5247 22 7 7.0532 -7.3895 -3.6184 23 1 7.8333 -7.9579 -3.7141 24 6 6.0679 -7.2418 -4.5602 25 6 5.1364 -6.3836 -4.1136 26 6 5.5631 -5.9506 -2.7843 27 6 1.8233 -3.3823 -1.1358 28 6 1.2677 -2.5152 -0.0005 29 1 -0.4849 0.8400 0.0004 30 1 3.8983 -0.2078 -0.1590 31 1 3.8771 -1.6007 0.9544 32 1 5.0752 -2.2344 -1.0890 33 1 3.7071 -1.6973 -2.0935 34 1 3.3721 -4.5280 -2.8452 35 1 8.1500 -6.2631 1.0852 36 1 6.8789 -5.1343 1.6128 37 1 8.9713 -4.0361 -0.3276 38 1 8.5658 -1.9803 1.1019 39 1 7.4727 -2.9676 2.2116 40 1 9.4097 -4.5180 2.7402 41 1 10.5028 -3.5306 1.6302 42 1 6.0440 -7.7413 -5.5174 43 1 4.2439 -6.0727 -4.6363 44 1 1.5907 -2.9192 -2.0946 45 1 1.3711 -4.3730 -1.0913 46 1 0.2036 -2.3409 -0.1602 47 1 1.4198 -3.0193 0.9538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:05 Heat of formation + Delta-G solvation = 76.182574 kcal Electronic energy + Delta-G solvation = -27732.152723 eV Core-core repulsion = 24107.633279 eV Total energy + Delta-G solvation = -3624.519445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67601 -40.00423 -39.19845 -38.06535 -36.37187 -34.14907 -32.80359 -32.05734 -31.46838 -31.16184 -29.02832 -27.94547 -24.79629 -23.71993 -23.35205 -23.10800 -23.00548 -21.50088 -21.46198 -21.10496 -20.00078 -18.26537 -17.99536 -17.14663 -16.73632 -16.52971 -16.38947 -16.34056 -15.39033 -15.19062 -15.08384 -14.67518 -14.63455 -14.37618 -14.12452 -14.03154 -13.94035 -13.84206 -13.48861 -13.41233 -12.94805 -12.73427 -12.57809 -12.38587 -12.29567 -12.04353 -11.88227 -11.79751 -11.56584 -11.39313 -11.11964 -10.88195 -10.78623 -10.60047 -10.52951 -10.04181 -9.98734 -9.79929 -8.45426 -8.15814 -6.09069 0.14014 0.57683 1.38065 1.42253 1.50763 1.79095 1.83159 2.21649 2.42062 2.89775 3.04096 3.12494 3.23646 3.65457 3.85545 3.90558 3.99160 4.08343 4.09979 4.19301 4.24225 4.33839 4.38540 4.56519 4.72969 4.75258 4.79918 4.82936 4.87898 4.90415 4.97042 5.00516 5.08128 5.10050 5.17146 5.26176 5.27236 5.31950 5.33943 5.46384 5.46966 5.59095 5.64274 5.77503 5.81821 5.91395 5.96419 6.28480 6.36856 6.51805 6.87692 6.96386 7.48910 7.55217 8.95005 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.004003 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.534975 B = 6993.765530 C = 8898.173837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.257 1.257 7 C -0.496 4.496 8 C -0.011 4.011 9 C -0.099 4.099 10 C 0.180 3.820 11 H 0.066 0.934 12 N -0.689 5.689 13 C 0.475 3.525 14 N -0.608 5.608 15 C 0.371 3.629 16 C -0.010 4.010 17 C -0.149 4.149 18 C -0.186 4.186 19 C -0.153 4.153 20 N -0.586 5.586 21 C 0.314 3.686 22 N -0.561 5.561 23 H 0.432 0.568 24 C 0.057 3.943 25 C -0.186 4.186 26 C -0.290 4.290 27 C -0.102 4.102 28 C 0.011 3.989 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.017 0.983 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.415 0.585 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.227 0.773 43 H 0.166 0.834 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.032 0.968 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.459 -14.797 -7.308 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.182 1.182 7 C -0.515 4.515 8 C -0.049 4.049 9 C -0.139 4.139 10 C 0.076 3.924 11 H 0.084 0.916 12 N -0.319 5.319 13 C 0.226 3.774 14 N -0.338 5.338 15 C 0.100 3.900 16 C -0.049 4.049 17 C -0.168 4.168 18 C -0.223 4.223 19 C -0.190 4.190 20 N -0.313 5.313 21 C 0.075 3.925 22 N -0.169 5.169 23 H 0.273 0.727 24 C -0.067 4.067 25 C -0.212 4.212 26 C -0.304 4.304 27 C -0.141 4.141 28 C -0.027 4.027 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.253 0.747 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.243 0.757 43 H 0.183 0.817 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 16.793 -14.578 -6.451 23.154 hybrid contribution -0.472 0.850 -1.039 1.423 sum 16.321 -13.727 -7.490 22.604 Atomic orbital electron populations 1.69955 1.07495 1.27415 1.52064 1.25531 0.95298 1.01513 0.94922 0.85869 0.79239 0.80003 0.78580 1.20000 1.21769 1.18178 1.20597 0.90910 0.91886 1.48125 1.19678 0.94801 0.95558 0.94846 1.21732 0.97504 0.95534 0.99088 1.20614 0.92967 0.88436 0.90414 0.91607 1.44769 1.20630 1.45362 1.21127 1.18284 0.85929 0.85547 0.87642 1.67958 1.11664 1.31705 1.22437 1.22731 0.86986 0.85698 0.94569 1.19919 0.96114 0.98973 0.89853 1.21917 1.01837 0.96764 0.96320 1.23064 1.01143 0.94638 1.03475 1.23073 0.95186 1.02239 0.98519 1.67159 1.37226 1.24492 1.02415 1.18437 0.91553 0.93341 0.89193 1.41545 1.24057 1.39263 1.12053 0.72745 1.22551 0.87786 1.00926 0.95468 1.21791 1.03015 1.03292 0.93075 1.20215 1.01710 1.08272 1.00216 1.21725 0.93345 0.98666 1.00352 1.19280 0.97169 0.93334 0.92892 0.92800 0.95343 0.96428 0.94141 0.93746 0.74741 0.87848 0.89342 0.89642 0.89366 0.88889 0.87155 0.87631 0.75675 0.81676 0.92931 0.92732 0.94938 0.98217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 12.73 21.45 0.27 -54.02 16 2 C 0.03 1.41 5.46 84.65 0.46 1.87 16 3 Si 0.94 43.66 27.27 68.60 1.87 45.53 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.26 -11.51 6.46 99.48 0.64 -10.86 16 7 C -0.50 -26.12 5.51 -16.17 -0.09 -26.21 16 8 C -0.01 -0.50 5.59 30.11 0.17 -0.33 16 9 C -0.10 -4.13 5.51 30.66 0.17 -3.96 16 10 C 0.18 6.94 2.38 44.96 0.11 7.05 16 11 H 0.07 2.80 7.58 -2.39 -0.02 2.78 16 12 N -0.69 -22.46 5.20 -323.78 -1.68 -24.14 16 13 C 0.48 16.11 7.52 133.40 1.00 17.11 16 14 N -0.61 -21.79 9.25 -185.01 -1.71 -23.50 16 15 C 0.37 11.93 6.84 138.74 0.95 12.88 16 16 C -0.01 -0.25 5.91 29.85 0.18 -0.07 16 17 C -0.15 -3.62 5.72 -10.79 -0.06 -3.68 16 18 C -0.19 -4.43 10.18 30.59 0.31 -4.11 16 19 C -0.15 -2.84 10.25 30.60 0.31 -2.52 16 20 N -0.59 -18.12 10.35 -185.69 -1.92 -20.04 16 21 C 0.31 8.84 8.48 133.96 1.14 9.97 16 22 N -0.56 -10.13 6.03 -192.31 -1.16 -11.29 16 23 H 0.43 5.12 8.96 -92.71 -0.83 4.29 16 24 C 0.06 0.80 11.83 82.97 0.98 1.79 16 25 C -0.19 -3.77 10.98 23.43 0.26 -3.52 16 26 C -0.29 -8.49 6.32 -20.11 -0.13 -8.61 16 27 C -0.10 -4.16 5.40 30.67 0.17 -3.99 16 28 C 0.01 0.56 5.97 30.12 0.18 0.74 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.03 1.31 4.78 -2.39 -0.01 1.30 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.41 11.47 8.53 -92.71 -0.79 10.68 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.30 7.88 -2.38 -0.02 2.28 16 37 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.23 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.03 1.78 7.07 -2.39 -0.02 1.76 16 47 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -68.70 378.11 1.09 -67.61 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.68 Total: 25.45 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 6.10 Total: -5.61 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -6.21 Total: -132.98 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.87 Total: 45.53 kcal Total: -68.70 1.09 -67.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.793 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds