Wall clock time and date at job start Tue Mar 31 2020 14:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48496 * 109.46962 * 239.99542 * 3 2 1 5 5 H 1.48495 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46980 * 120.00147 * 3 2 1 7 7 C 1.39921 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00186 * 165.99298 * 7 2 1 9 9 C 1.41186 * 119.99806 * 345.99991 * 7 2 1 10 10 C 1.39975 * 119.51121 * 329.25262 * 9 7 2 11 11 C 1.39867 * 120.01595 * 180.02562 * 10 9 7 12 12 C 1.40847 * 121.17171 * 179.97438 * 11 10 9 13 13 C 1.36198 * 119.61011 * 180.02562 * 12 11 10 14 14 C 1.39250 * 120.95386 * 0.02562 * 13 12 11 15 15 C 1.36526 * 120.99205 * 359.97293 * 14 13 12 16 16 C 1.39899 * 119.72618 * 0.02562 * 15 14 13 17 17 C 1.46017 * 121.15759 * 179.97438 * 16 15 14 18 18 N 1.39535 * 120.30250 * 0.02562 * 17 16 15 19 19 C 1.37669 * 120.00605 * 208.32527 * 18 17 16 20 20 N 1.30328 * 119.99867 * 6.60082 * 19 18 17 21 21 N 1.37507 * 119.99985 * 186.59892 * 19 18 17 22 22 C 1.46503 * 119.99559 * 179.97438 * 21 19 18 23 23 C 1.53010 * 109.46745 * 180.02562 * 22 21 19 24 24 C 1.53004 * 109.46806 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46987 * 179.97438 * 24 23 22 26 26 N 1.46899 * 109.47099 * 180.02562 * 25 24 23 27 27 C 1.36195 * 119.40454 * 180.29511 * 17 16 15 28 28 H 0.96999 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99096 * 359.97438 * 10 9 7 30 30 H 1.07999 * 120.19667 * 0.04463 * 12 11 10 31 31 H 1.07995 * 119.51902 * 179.97438 * 13 12 11 32 32 H 1.07997 * 119.50443 * 179.97438 * 14 13 12 33 33 H 1.07997 * 120.13415 * 180.02562 * 15 14 13 34 34 H 0.97007 * 119.99628 * 28.32991 * 18 17 16 35 35 H 0.96996 * 120.00408 * 180.02562 * 20 19 18 36 36 H 0.96994 * 120.00366 * 0.02562 * 21 19 18 37 37 H 1.09000 * 109.47650 * 299.99856 * 22 21 19 38 38 H 1.09003 * 109.47374 * 60.00489 * 22 21 19 39 39 H 1.08995 * 109.47035 * 299.99798 * 23 22 21 40 40 H 1.08991 * 109.47162 * 60.00401 * 23 22 21 41 41 H 1.08989 * 109.47402 * 300.00189 * 24 23 22 42 42 H 1.09001 * 109.46771 * 60.00386 * 24 23 22 43 43 H 1.09007 * 109.47256 * 300.00469 * 25 24 23 44 44 H 1.09004 * 109.47139 * 59.99966 * 25 24 23 45 45 H 1.00899 * 110.99795 * 180.02562 * 26 25 24 46 46 H 1.00896 * 110.99833 * 303.95257 * 26 25 24 47 47 H 1.07997 * 119.67533 * 179.72344 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6964 1.2126 7 6 2.0080 -1.2117 0.0005 8 1 3.0639 -1.2258 -0.2258 9 6 1.3335 -2.4161 0.2969 10 6 0.2414 -2.3974 1.1723 11 6 -0.4341 -3.5845 1.4736 12 6 -1.5355 -3.5938 2.3515 13 6 -2.1697 -4.7681 2.6231 14 6 -1.7448 -5.9618 2.0455 15 6 -0.6810 -5.9894 1.1902 16 6 -0.0040 -4.8034 0.8868 17 6 1.1379 -4.7969 -0.0233 18 7 1.5764 -5.9840 -0.6111 19 6 2.8992 -6.1301 -0.9635 20 7 3.7664 -5.2151 -0.6332 21 7 3.3054 -7.2415 -1.6640 22 6 4.7129 -7.3966 -2.0395 23 6 4.8947 -8.7085 -2.8059 24 6 6.3646 -8.8702 -3.1986 25 6 6.5465 -10.1822 -3.9644 26 7 7.9579 -10.3377 -4.3409 27 6 1.7746 -3.6227 -0.2890 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0791 -1.4662 1.6157 30 1 -1.8754 -2.6751 2.8064 31 1 -3.0138 -4.7736 3.2967 32 1 -2.2646 -6.8795 2.2776 33 1 -0.3635 -6.9230 0.7498 34 1 0.9491 -6.7064 -0.7715 35 1 4.6984 -5.3178 -0.8818 36 1 2.6599 -7.9224 -1.9102 37 1 5.0144 -6.5619 -2.6723 38 1 5.3292 -7.4122 -1.1406 39 1 4.5932 -9.5434 -2.1735 40 1 4.2785 -8.6925 -3.7048 41 1 6.6657 -8.0352 -3.8311 42 1 6.9811 -8.8860 -2.2998 43 1 6.2455 -11.0171 -3.3314 44 1 5.9298 -10.1668 -4.8631 45 1 8.1040 -11.1973 -4.8486 46 1 8.2793 -9.5440 -4.8743 47 1 2.6224 -3.6136 -0.9579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167883804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:30 Heat of formation + Delta-G solvation = 63.748621 kcal Electronic energy + Delta-G solvation = -26286.361803 eV Core-core repulsion = 22661.303182 eV Total energy + Delta-G solvation = -3625.058621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.31009 -38.23934 -36.78183 -35.58373 -34.80229 -32.98963 -32.19617 -30.72238 -30.17963 -29.30917 -27.75715 -26.64439 -25.13699 -23.12748 -21.99479 -21.62869 -21.34111 -20.85615 -19.51060 -17.99152 -17.63668 -16.56970 -16.14231 -15.98681 -15.86524 -15.52728 -15.07090 -14.90591 -14.53952 -14.25713 -14.06938 -13.93747 -13.41560 -12.91019 -12.82509 -12.58474 -12.31706 -12.29708 -11.97844 -11.85716 -11.80740 -11.43601 -11.41527 -11.12494 -11.07301 -10.82350 -10.66838 -10.45946 -10.12561 -9.77513 -9.46724 -9.27863 -9.19370 -8.83591 -8.64602 -8.33997 -7.77754 -7.27920 -6.71395 -6.17811 -4.25239 1.86948 2.39983 2.91303 3.07207 3.10604 3.14877 3.19553 3.71111 3.97001 4.00455 4.22127 4.27597 4.42117 4.52873 4.86313 4.91667 4.92222 5.00832 5.25300 5.31692 5.46062 5.54977 5.68512 5.75719 5.82527 5.82667 5.87008 5.90729 6.04683 6.28314 6.42760 6.57422 6.62463 6.69518 6.78689 6.92764 6.97761 7.10932 7.13748 7.26313 7.39445 7.46217 7.52451 7.61871 7.77767 7.92518 8.16184 8.20336 8.32530 8.33769 8.71045 8.94100 8.98944 9.18187 10.24410 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.002888 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.966261 B = 9691.439596 C =12264.829078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.445 4.445 8 H 0.080 0.920 9 C 0.122 3.878 10 C -0.220 4.220 11 C 0.012 3.988 12 C -0.137 4.137 13 C -0.120 4.120 14 C -0.196 4.196 15 C -0.082 4.082 16 C -0.140 4.140 17 C 0.158 3.842 18 N -0.657 5.657 19 C 0.625 3.375 20 N -0.792 5.792 21 N -0.778 5.778 22 C 0.133 3.867 23 C -0.125 4.125 24 C -0.116 4.116 25 C 0.061 3.939 26 N -0.854 5.854 27 C -0.140 4.140 28 H 0.281 0.719 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.400 0.600 35 H 0.330 0.670 36 H 0.386 0.614 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.342 0.658 46 H 0.341 0.659 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -15.580 -7.039 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.098 0.902 9 C 0.119 3.881 10 C -0.240 4.240 11 C 0.011 3.989 12 C -0.155 4.155 13 C -0.138 4.138 14 C -0.215 4.215 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.064 3.936 18 N -0.289 5.289 19 C 0.258 3.742 20 N -0.438 5.438 21 N -0.425 5.425 22 C 0.008 3.992 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.070 4.070 26 N -0.383 5.383 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.146 0.854 36 H 0.219 0.781 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.804 -14.387 -5.746 16.920 hybrid contribution -0.109 -0.625 -1.730 1.843 sum 6.695 -15.012 -7.475 18.057 Atomic orbital electron populations 1.69840 1.07452 1.29225 1.34608 1.25911 0.94803 1.01202 0.92689 0.86359 0.80080 0.80255 0.79977 1.19074 1.20411 1.18781 1.19608 0.96812 0.90700 1.40252 0.90184 1.17384 0.91141 0.91456 0.88161 1.21053 1.02507 0.95473 1.05002 1.17765 0.94020 0.92765 0.94364 1.20883 0.97128 0.97120 1.00394 1.20445 0.99702 0.93164 1.00511 1.20216 1.00596 0.97036 1.03671 1.20414 0.95707 0.95875 0.97994 1.18343 0.99442 0.93535 1.02956 1.17935 0.96031 0.84054 0.95562 1.41104 1.04723 1.17643 1.65441 1.18858 0.86385 0.82811 0.86141 1.70144 1.06409 1.29043 1.38183 1.45469 1.09381 1.24187 1.63469 1.21144 0.81898 0.97523 0.98648 1.21670 0.97107 0.97156 1.00454 1.21484 0.95670 0.97105 1.01224 1.21797 0.88479 0.98410 0.98322 1.58710 1.19530 1.07784 1.52305 1.21324 1.02431 0.90403 1.02103 0.90850 0.86594 0.87348 0.88310 0.88482 0.88700 0.76460 0.85357 0.78061 0.92192 0.92143 0.91111 0.91309 0.91688 0.90650 0.90974 0.95527 0.84610 0.84662 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 11.11 55.55 0.62 -19.88 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.90 29.58 -169.99 -5.03 13.87 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.44 -11.86 8.99 -37.83 -0.34 -12.20 16 8 H 0.08 2.07 7.88 -52.49 -0.41 1.66 16 9 C 0.12 3.28 5.51 -107.01 -0.59 2.69 16 10 C -0.22 -5.85 8.35 -38.32 -0.32 -6.17 16 11 C 0.01 0.29 5.74 -106.88 -0.61 -0.33 16 12 C -0.14 -2.99 9.78 -39.33 -0.38 -3.37 16 13 C -0.12 -2.32 9.95 -39.94 -0.40 -2.72 16 14 C -0.20 -3.67 9.96 -39.82 -0.40 -4.07 16 15 C -0.08 -1.59 9.50 -39.58 -0.38 -1.96 16 16 C -0.14 -3.19 5.90 -104.74 -0.62 -3.80 16 17 C 0.16 3.52 6.52 -81.97 -0.53 2.99 16 18 N -0.66 -11.45 5.26 -10.01 -0.05 -11.50 16 19 C 0.62 10.24 8.46 -319.81 -2.71 7.53 16 20 N -0.79 -14.88 10.47 30.19 0.32 -14.56 16 21 N -0.78 -8.91 5.67 -61.73 -0.35 -9.26 16 22 C 0.13 1.26 5.02 -4.04 -0.02 1.23 16 23 C -0.13 -0.84 5.33 -26.72 -0.14 -0.98 16 24 C -0.12 -0.75 5.47 -26.73 -0.15 -0.90 16 25 C 0.06 0.36 6.79 -3.83 -0.03 0.34 16 26 N -0.85 -5.08 9.62 -10.37 -0.10 -5.18 16 27 C -0.14 -3.47 8.25 -39.20 -0.32 -3.79 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 3.20 6.40 -52.48 -0.34 2.86 16 30 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.09 1.54 6.86 -52.49 -0.36 1.18 16 34 H 0.40 5.70 7.59 -40.82 -0.31 5.39 16 35 H 0.33 5.46 7.15 -40.82 -0.29 5.16 16 36 H 0.39 3.54 8.58 -40.82 -0.35 3.19 16 37 H 0.06 0.61 7.97 -51.93 -0.41 0.19 16 38 H 0.06 0.61 7.97 -51.93 -0.41 0.19 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.34 1.51 9.08 -39.29 -0.36 1.16 16 46 H 0.34 1.70 8.99 -39.29 -0.35 1.35 16 47 H 0.13 3.30 5.82 -52.49 -0.31 3.00 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -30.46 383.31 -13.69 -44.15 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -6.84 Total: 20.36 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -8.02 Total: -23.78 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.43 Total: -60.38 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.46 -13.69 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167883804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.897 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds