Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48496 * 109.46962 * 239.99542 * 3 2 1 5 5 H 1.48495 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46980 * 120.00147 * 3 2 1 7 7 C 1.39921 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00186 * 165.99298 * 7 2 1 9 9 C 1.41186 * 119.99806 * 345.99991 * 7 2 1 10 10 C 1.39975 * 119.51121 * 329.25262 * 9 7 2 11 11 C 1.39867 * 120.01595 * 180.02562 * 10 9 7 12 12 C 1.40847 * 121.17171 * 179.97438 * 11 10 9 13 13 C 1.36198 * 119.61011 * 180.02562 * 12 11 10 14 14 C 1.39250 * 120.95386 * 0.02562 * 13 12 11 15 15 C 1.36526 * 120.99205 * 359.97293 * 14 13 12 16 16 C 1.39899 * 119.72618 * 0.02562 * 15 14 13 17 17 C 1.46017 * 121.15759 * 179.97438 * 16 15 14 18 18 N 1.39535 * 120.30250 * 0.02562 * 17 16 15 19 19 C 1.37669 * 120.00605 * 208.32527 * 18 17 16 20 20 N 1.30328 * 119.99867 * 6.60082 * 19 18 17 21 21 N 1.37507 * 119.99985 * 186.59892 * 19 18 17 22 22 C 1.46503 * 119.99559 * 179.97438 * 21 19 18 23 23 C 1.53010 * 109.46745 * 180.02562 * 22 21 19 24 24 C 1.53004 * 109.46806 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.46987 * 179.97438 * 24 23 22 26 26 N 1.46899 * 109.47099 * 180.02562 * 25 24 23 27 27 C 1.36195 * 119.40454 * 180.29511 * 17 16 15 28 28 H 0.96999 * 120.00026 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99096 * 359.97438 * 10 9 7 30 30 H 1.07999 * 120.19667 * 0.04463 * 12 11 10 31 31 H 1.07995 * 119.51902 * 179.97438 * 13 12 11 32 32 H 1.07997 * 119.50443 * 179.97438 * 14 13 12 33 33 H 1.07997 * 120.13415 * 180.02562 * 15 14 13 34 34 H 0.97007 * 119.99628 * 28.32991 * 18 17 16 35 35 H 0.96996 * 120.00408 * 180.02562 * 20 19 18 36 36 H 0.96994 * 120.00366 * 0.02562 * 21 19 18 37 37 H 1.09000 * 109.47650 * 299.99856 * 22 21 19 38 38 H 1.09003 * 109.47374 * 60.00489 * 22 21 19 39 39 H 1.08995 * 109.47035 * 299.99798 * 23 22 21 40 40 H 1.08991 * 109.47162 * 60.00401 * 23 22 21 41 41 H 1.08989 * 109.47402 * 300.00189 * 24 23 22 42 42 H 1.09001 * 109.46771 * 60.00386 * 24 23 22 43 43 H 1.09007 * 109.47256 * 300.00469 * 25 24 23 44 44 H 1.09004 * 109.47139 * 59.99966 * 25 24 23 45 45 H 1.00899 * 110.99795 * 180.02562 * 26 25 24 46 46 H 1.00896 * 110.99833 * 303.95257 * 26 25 24 47 47 H 1.07997 * 119.67533 * 179.72344 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2124 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6964 1.2126 7 6 2.0080 -1.2117 0.0005 8 1 3.0639 -1.2258 -0.2258 9 6 1.3335 -2.4161 0.2969 10 6 0.2414 -2.3974 1.1723 11 6 -0.4341 -3.5845 1.4736 12 6 -1.5355 -3.5938 2.3515 13 6 -2.1697 -4.7681 2.6231 14 6 -1.7448 -5.9618 2.0455 15 6 -0.6810 -5.9894 1.1902 16 6 -0.0040 -4.8034 0.8868 17 6 1.1379 -4.7969 -0.0233 18 7 1.5764 -5.9840 -0.6111 19 6 2.8992 -6.1301 -0.9635 20 7 3.7664 -5.2151 -0.6332 21 7 3.3054 -7.2415 -1.6640 22 6 4.7129 -7.3966 -2.0395 23 6 4.8947 -8.7085 -2.8059 24 6 6.3646 -8.8702 -3.1986 25 6 6.5465 -10.1822 -3.9644 26 7 7.9579 -10.3377 -4.3409 27 6 1.7746 -3.6227 -0.2890 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0791 -1.4662 1.6157 30 1 -1.8754 -2.6751 2.8064 31 1 -3.0138 -4.7736 3.2967 32 1 -2.2646 -6.8795 2.2776 33 1 -0.3635 -6.9230 0.7498 34 1 0.9491 -6.7064 -0.7715 35 1 4.6984 -5.3178 -0.8818 36 1 2.6599 -7.9224 -1.9102 37 1 5.0144 -6.5619 -2.6723 38 1 5.3292 -7.4122 -1.1406 39 1 4.5932 -9.5434 -2.1735 40 1 4.2785 -8.6925 -3.7048 41 1 6.6657 -8.0352 -3.8311 42 1 6.9811 -8.8860 -2.2998 43 1 6.2455 -11.0171 -3.3314 44 1 5.9298 -10.1668 -4.8631 45 1 8.1040 -11.1973 -4.8486 46 1 8.2793 -9.5440 -4.8743 47 1 2.6224 -3.6136 -0.9579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167883804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = 46.303678 kcal Electronic energy + Delta-G solvation = -26287.118273 eV Core-core repulsion = 22661.303182 eV Total energy + Delta-G solvation = -3625.815091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88221 -39.56739 -37.68477 -37.09517 -36.05511 -34.44077 -33.50333 -31.81407 -31.77213 -31.04857 -29.25279 -27.65844 -26.93851 -24.15065 -23.43180 -23.09355 -22.29318 -22.18131 -21.04106 -19.58910 -19.03907 -17.80732 -17.43872 -17.17385 -17.03420 -16.65764 -16.40606 -15.98569 -15.75386 -15.57928 -15.38980 -15.02411 -14.69687 -14.53411 -14.28163 -14.04901 -13.76129 -13.51608 -13.22408 -13.17148 -12.82398 -12.68706 -12.60720 -12.56150 -12.44059 -12.09091 -12.01462 -11.77712 -11.57204 -11.48360 -11.25617 -10.99852 -10.56547 -10.06988 -9.75650 -9.62528 -9.14460 -9.07526 -8.57784 -7.90689 -6.23564 0.17503 0.67186 1.37125 1.42078 1.50114 1.52289 1.76518 2.16209 2.23788 2.49267 3.03103 3.11081 3.60396 3.86348 3.89244 3.96473 4.16041 4.24157 4.28471 4.36505 4.38468 4.43578 4.60153 4.66805 4.71045 4.74433 4.82296 4.86899 4.94201 4.97500 5.17328 5.21782 5.27559 5.30216 5.32576 5.35554 5.50281 5.61758 5.78267 5.81342 5.90263 5.93798 6.15342 6.22575 6.24698 6.28994 6.50198 6.56865 6.58787 6.81357 7.01939 7.03632 7.12486 7.89916 8.40258 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.002888 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.966261 B = 9691.439596 C =12264.829078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.487 4.487 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.248 4.248 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.107 4.107 14 C -0.182 4.182 15 C -0.082 4.082 16 C -0.156 4.156 17 C 0.178 3.822 18 N -0.648 5.648 19 C 0.625 3.375 20 N -0.835 5.835 21 N -0.759 5.759 22 C 0.131 3.869 23 C -0.112 4.112 24 C -0.112 4.112 25 C 0.062 3.938 26 N -0.866 5.866 27 C -0.172 4.172 28 H 0.286 0.714 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.419 0.581 35 H 0.337 0.663 36 H 0.403 0.597 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.350 0.650 46 H 0.345 0.655 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 -18.956 -7.154 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.516 4.516 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.269 4.269 11 C -0.013 4.013 12 C -0.181 4.181 13 C -0.125 4.125 14 C -0.200 4.200 15 C -0.100 4.100 16 C -0.159 4.159 17 C 0.082 3.918 18 N -0.282 5.282 19 C 0.258 3.742 20 N -0.483 5.483 21 N -0.406 5.406 22 C 0.007 3.993 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.068 4.068 26 N -0.396 5.396 27 C -0.195 4.195 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.257 0.743 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.838 -17.851 -5.894 19.685 hybrid contribution 0.072 0.088 -1.620 1.624 sum 5.910 -17.763 -7.514 20.172 Atomic orbital electron populations 1.69916 1.08839 1.30236 1.35891 1.26722 0.95562 1.04278 0.91676 0.85287 0.78765 0.75872 0.79950 1.18389 1.19073 1.18709 1.19760 0.96676 0.92120 1.43093 0.91088 1.17694 0.91721 0.92606 0.88695 1.20923 1.03860 0.95643 1.06457 1.18073 0.94931 0.92886 0.95407 1.21022 0.97368 0.98736 1.01013 1.20925 0.99617 0.92259 0.99663 1.20805 0.99450 0.98370 1.01362 1.20820 0.95370 0.95931 0.97905 1.18660 0.99961 0.94333 1.02966 1.17928 0.94854 0.84861 0.94187 1.40920 1.05645 1.16624 1.65021 1.18780 0.85632 0.83808 0.86002 1.70073 1.07357 1.31010 1.39838 1.45304 1.10562 1.22832 1.61868 1.21292 0.80429 0.98948 0.98651 1.21568 0.97391 0.95572 1.00494 1.21431 0.95276 0.97554 1.00847 1.21763 0.88690 0.97883 0.98506 1.58714 1.19581 1.08517 1.52825 1.21243 1.03529 0.91070 1.03671 0.90397 0.89102 0.87434 0.84547 0.83923 0.84759 0.74302 0.84555 0.76164 0.92921 0.92708 0.90137 0.90357 0.91816 0.91681 0.90933 0.94807 0.83699 0.84190 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.69 11.11 21.82 0.24 -45.45 16 2 C 0.03 1.72 5.14 85.25 0.44 2.15 16 3 Si 0.98 40.75 29.58 68.60 2.03 42.78 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.49 -28.08 8.99 23.40 0.21 -27.87 16 8 H 0.07 4.02 7.88 -2.91 -0.02 3.99 16 9 C 0.10 5.55 5.51 -21.41 -0.12 5.44 16 10 C -0.25 -14.14 8.35 23.09 0.19 -13.95 16 11 C -0.01 -0.62 5.74 -21.32 -0.12 -0.74 16 12 C -0.16 -7.09 9.78 22.43 0.22 -6.87 16 13 C -0.11 -3.75 9.95 22.04 0.22 -3.53 16 14 C -0.18 -5.83 9.96 22.11 0.22 -5.61 16 15 C -0.08 -2.88 9.50 22.27 0.21 -2.67 16 16 C -0.16 -7.01 5.90 -19.94 -0.12 -7.13 16 17 C 0.18 7.98 6.52 39.46 0.26 8.23 16 18 N -0.65 -21.66 5.26 -185.59 -0.98 -22.63 16 19 C 0.62 19.95 8.46 260.44 2.20 22.15 16 20 N -0.83 -32.05 10.47 -58.41 -0.61 -32.66 16 21 N -0.76 -15.84 5.67 -349.21 -1.98 -17.82 16 22 C 0.13 2.29 5.02 86.38 0.43 2.73 16 23 C -0.11 -1.23 5.33 30.60 0.16 -1.07 16 24 C -0.11 -1.28 5.47 30.59 0.17 -1.11 16 25 C 0.06 0.63 6.79 86.30 0.59 1.22 16 26 N -0.87 -9.06 9.62 -186.71 -1.80 -10.86 16 27 C -0.17 -9.00 8.25 22.52 0.19 -8.81 16 28 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 29 H 0.09 5.47 6.40 -2.91 -0.02 5.46 16 30 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 31 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.13 3.61 6.86 -2.91 -0.02 3.59 16 34 H 0.42 10.59 7.59 -92.70 -0.70 9.88 16 35 H 0.34 11.49 7.15 -92.71 -0.66 10.82 16 36 H 0.40 6.06 8.58 -92.71 -0.80 5.27 16 37 H 0.05 1.03 7.97 -2.39 -0.02 1.01 16 38 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.35 2.59 9.08 -89.70 -0.81 1.78 16 46 H 0.35 3.03 8.99 -89.70 -0.81 2.23 16 47 H 0.13 6.62 5.82 -2.91 -0.02 6.60 16 Total: -1.00 -71.98 383.31 -0.48 -72.46 By element: Atomic # 1 Polarization: 54.35 SS G_CDS: -2.73 Total: 51.62 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 5.35 Total: -37.43 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.12 Total: -129.42 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -71.98 -0.48 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167883804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.763 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds