Wall clock time and date at job start Tue Mar 31 2020 14:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35672 * 116.99912 * 2 1 4 4 C 1.38040 * 120.21031 * 0.23533 * 3 2 1 5 5 C 1.39220 * 119.97840 * 180.27675 * 4 3 2 6 6 N 1.38924 * 119.79478 * 179.76256 * 5 4 3 7 7 C 1.46494 * 120.00090 * 179.72320 * 6 5 4 8 8 C 1.52992 * 109.47506 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47391 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47193 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46904 * 180.02562 * 10 9 8 12 12 C 1.38221 * 119.62071 * 124.72750 * 11 10 9 13 13 C 1.38622 * 119.16390 * 179.75069 * 12 11 10 14 14 C 1.38674 * 118.41935 * 0.51039 * 13 12 11 15 15 C 1.38176 * 119.16047 * 359.73052 * 14 13 12 16 16 N 1.31859 * 119.61648 * 304.99834 * 11 10 9 17 17 C 1.39715 * 120.40628 * 359.48676 * 5 4 3 18 18 C 1.36224 * 120.42846 * 0.25500 * 17 5 4 19 19 C 1.40855 * 120.01272 * 0.02562 * 18 17 5 20 20 C 1.40961 * 120.20578 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00530 * 204.84704 * 20 19 18 22 22 C 1.39847 * 119.99887 * 24.84085 * 20 19 18 23 23 N 1.30952 * 119.99874 * 17.84732 * 22 20 19 24 24 Si 1.86803 * 120.00085 * 197.83862 * 22 20 19 25 25 H 1.48494 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46936 * 120.00219 * 24 22 20 27 27 H 1.48498 * 109.47427 * 240.00160 * 24 22 20 28 28 H 1.08995 * 109.46800 * 299.99777 * 1 2 3 29 29 H 1.08996 * 109.47010 * 60.00105 * 1 2 3 30 30 H 1.09006 * 109.46393 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.01225 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99900 * 359.73147 * 6 5 4 33 33 H 1.09007 * 109.47376 * 59.99990 * 7 6 5 34 34 H 1.09003 * 109.47312 * 300.00174 * 7 6 5 35 35 H 1.09006 * 109.47219 * 60.00031 * 8 7 6 36 36 H 1.08997 * 109.47493 * 300.00267 * 8 7 6 37 37 H 1.08997 * 109.46978 * 60.00043 * 9 8 7 38 38 H 1.08998 * 109.46922 * 300.00023 * 9 8 7 39 39 H 1.08997 * 109.47083 * 60.00156 * 10 9 8 40 40 H 1.08998 * 109.47245 * 299.99874 * 10 9 8 41 41 H 1.08010 * 120.41495 * 359.97438 * 12 11 10 42 42 H 1.07997 * 120.79039 * 180.26598 * 13 12 11 43 43 H 1.07996 * 120.41492 * 179.71018 * 14 13 12 44 44 H 1.08003 * 119.61350 * 179.97438 * 15 14 13 45 45 H 1.08002 * 119.78931 * 180.27980 * 17 5 4 46 46 H 1.08007 * 119.99972 * 179.97438 * 18 17 5 47 47 H 0.96997 * 120.00076 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3693 0.0049 5 6 1.9344 3.6072 -0.0009 6 7 1.1782 4.7726 -0.0010 7 6 1.8438 6.0776 -0.0010 8 6 0.7907 7.1874 -0.0004 9 6 1.4859 8.5504 0.0002 10 6 0.4327 9.6602 0.0002 11 6 1.1175 11.0026 0.0002 12 6 0.8182 11.9222 -0.9874 13 6 1.4499 13.1561 -0.9753 14 6 2.3711 13.4161 0.0281 15 6 2.6228 12.4457 0.9790 16 7 1.9993 11.2843 0.9392 17 6 3.3294 3.6846 -0.0010 18 6 4.0833 2.5501 -0.0005 19 6 3.4574 1.2882 -0.0006 20 6 4.2336 0.1116 -0.0006 21 1 3.8226 -0.8066 -0.3937 22 6 5.5361 0.1331 0.5081 23 7 5.9181 1.1129 1.2885 24 14 6.7310 -1.2359 0.0747 25 1 6.0591 -2.2155 -0.8163 26 1 7.9102 -0.6615 -0.6217 27 1 7.1736 -1.9184 1.3170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 0.2186 2.3169 0.0092 32 1 0.2095 4.7223 -0.0009 33 1 2.4667 6.1679 -0.8910 34 1 2.4667 6.1679 0.8890 35 1 0.1682 7.0971 0.8899 36 1 0.1675 7.0974 -0.8901 37 1 2.1087 8.6410 -0.8897 38 1 2.1088 8.6401 0.8902 39 1 -0.1904 9.5697 0.8899 40 1 -0.1898 9.5703 -0.8900 41 1 0.0985 11.6837 -1.7567 42 1 1.2327 13.8958 -1.7316 43 1 2.8855 14.3650 0.0655 44 1 3.3392 12.6403 1.7634 45 1 3.8132 4.6502 -0.0010 46 1 5.1613 2.6180 -0.0010 47 1 6.8216 1.1280 1.6411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168795033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:58 Heat of formation + Delta-G solvation = 6.847329 kcal Electronic energy + Delta-G solvation = -25574.143995 eV Core-core repulsion = 21914.325198 eV Total energy + Delta-G solvation = -3659.818797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.49512 -38.69089 -37.08348 -35.82828 -34.49920 -33.00665 -32.63326 -31.48660 -29.28137 -28.76802 -27.54107 -26.42969 -24.66213 -23.86085 -23.47432 -22.00686 -21.26341 -20.58348 -19.85456 -17.27642 -17.16468 -16.60673 -16.58294 -15.85200 -15.61549 -15.48910 -14.84073 -14.60516 -14.55309 -14.25560 -13.99339 -13.78361 -13.69479 -13.60207 -13.27790 -12.67619 -12.41203 -12.26051 -12.10047 -11.99599 -11.62654 -11.38593 -11.19805 -11.12964 -10.98999 -10.96078 -10.72788 -10.54980 -10.37996 -10.18495 -10.09670 -9.68021 -9.63879 -9.45299 -9.25396 -9.05829 -8.33450 -7.06719 -6.56385 -6.32705 -3.86808 0.79022 0.96169 2.95287 3.07055 3.22675 3.29612 3.37336 3.47951 3.98424 4.15366 4.19724 4.43792 4.52607 4.61385 4.72620 4.78906 4.82949 4.91184 4.96802 5.09682 5.30200 5.34773 5.46501 5.56410 5.62883 5.73708 5.76257 5.79835 5.83272 5.85371 5.91588 5.97695 6.02937 6.11230 6.22874 6.31085 6.34393 6.41104 6.48288 6.82672 7.07671 7.19451 7.40563 7.57756 7.72082 7.81973 8.02638 8.20102 8.45956 8.61155 8.73553 8.91441 9.10541 9.28369 10.48488 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.001963 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.945836 B =14261.912912 C =15674.566268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.049 3.951 4 C -0.244 4.244 5 C 0.128 3.872 6 N -0.761 5.761 7 C 0.138 3.862 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.070 4.070 11 C 0.135 3.865 12 C -0.173 4.173 13 C -0.074 4.074 14 C -0.184 4.184 15 C 0.103 3.897 16 N -0.480 5.480 17 C -0.190 4.190 18 C -0.102 4.102 19 C 0.059 3.941 20 C -0.449 4.449 21 H 0.077 0.923 22 C 0.070 3.930 23 N -0.813 5.813 24 Si 0.903 3.097 25 H -0.263 1.263 26 H -0.276 1.276 27 H -0.278 1.278 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.383 0.617 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.155 0.845 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 20.891 -3.321 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.004 3.996 4 C -0.267 4.267 5 C 0.030 3.970 6 N -0.396 5.396 7 C 0.013 3.987 8 C -0.166 4.166 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.003 4.003 12 C -0.193 4.193 13 C -0.100 4.100 14 C -0.203 4.203 15 C -0.054 4.054 16 N -0.189 5.189 17 C -0.212 4.212 18 C -0.122 4.122 19 C 0.056 3.944 20 C -0.481 4.481 21 H 0.095 0.905 22 C -0.143 4.143 23 N -0.441 5.441 24 Si 0.728 3.272 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.204 1.204 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.215 0.785 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.173 0.827 45 H 0.108 0.892 46 H 0.143 0.857 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.891 20.257 -2.548 22.269 hybrid contribution -0.196 0.427 -0.723 0.863 sum -9.087 20.684 -3.272 22.828 Atomic orbital electron populations 1.22707 0.81966 1.01550 0.99808 1.85991 1.18055 1.28324 1.90041 1.18966 0.92173 0.82079 1.06411 1.20050 0.97037 0.91524 1.18117 1.17054 0.90468 0.84735 1.04773 1.43912 1.06403 1.02334 1.86976 1.21004 0.94672 0.82613 1.00420 1.21757 0.98606 0.93994 1.02213 1.21402 0.97553 0.92288 1.03267 1.20594 0.97597 0.89349 1.03223 1.21377 0.92747 0.96068 0.90106 1.22025 1.02114 0.94717 1.00452 1.21593 0.94438 0.96568 0.97450 1.22141 1.00144 1.01309 0.96746 1.22802 0.96756 0.88578 0.97273 1.67510 1.07112 1.20314 1.23952 1.20029 0.91324 0.97805 1.12032 1.20707 0.99541 0.90261 1.01702 1.16934 0.87089 0.94082 0.96288 1.19226 0.96735 0.96489 1.35608 0.90496 1.25774 0.98860 0.96631 0.93068 1.69880 1.18809 1.31363 1.24050 0.86351 0.80209 0.81583 0.79029 1.18652 1.20104 1.20406 0.94243 0.94357 0.90174 0.88684 0.78499 0.93522 0.93319 0.91591 0.91784 0.91958 0.90473 0.89856 0.90328 0.84829 0.84946 0.84911 0.82726 0.89167 0.85698 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.44 9.78 -18.72 -0.18 -7.63 16 3 C 0.05 1.26 6.71 -38.42 -0.26 1.00 16 4 C -0.24 -5.59 8.86 -39.29 -0.35 -5.93 16 5 C 0.13 2.84 6.66 -83.73 -0.56 2.28 16 6 N -0.76 -13.37 5.70 -58.54 -0.33 -13.71 16 7 C 0.14 2.07 4.89 -4.05 -0.02 2.05 16 8 C -0.13 -1.40 5.33 -26.73 -0.14 -1.54 16 9 C -0.11 -1.09 5.07 -26.73 -0.14 -1.23 16 10 C -0.07 -0.60 5.62 -27.88 -0.16 -0.76 16 11 C 0.13 1.31 6.18 -82.59 -0.51 0.80 16 12 C -0.17 -1.37 9.71 -39.45 -0.38 -1.75 16 13 C -0.07 -0.51 10.18 -39.28 -0.40 -0.91 16 14 C -0.18 -1.28 10.11 -39.44 -0.40 -1.68 16 15 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 16 N -0.48 -5.28 9.88 -9.48 -0.09 -5.37 16 17 C -0.19 -4.54 9.22 -39.75 -0.37 -4.91 16 18 C -0.10 -2.72 8.62 -39.32 -0.34 -3.06 16 19 C 0.06 1.66 5.58 -106.64 -0.60 1.06 16 20 C -0.45 -12.72 8.70 -37.95 -0.33 -13.05 16 21 H 0.08 2.18 7.65 -52.48 -0.40 1.78 16 22 C 0.07 1.88 5.13 -17.32 -0.09 1.79 16 23 N -0.81 -22.12 10.97 55.54 0.61 -21.51 16 24 Si 0.90 19.98 29.60 -169.99 -5.03 14.95 16 25 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.90 6.29 -52.48 -0.33 1.57 16 32 H 0.38 5.91 8.47 -40.82 -0.35 5.56 16 33 H 0.05 0.73 7.92 -51.92 -0.41 0.32 16 34 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 41 H 0.13 0.76 7.95 -52.48 -0.42 0.35 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.09 1.98 6.67 -52.49 -0.35 1.63 16 46 H 0.13 3.44 6.17 -52.48 -0.32 3.12 16 47 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -32.06 388.18 -10.54 -42.60 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.13 Total: 8.32 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.23 Total: -23.52 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.18 Total: -40.58 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.18 Total: -7.63 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.06 -10.54 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168795033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.449 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds