Wall clock time and date at job start Tue Mar 31 2020 14:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35672 * 116.99912 * 2 1 4 4 C 1.38040 * 120.21031 * 0.23533 * 3 2 1 5 5 C 1.39220 * 119.97840 * 180.27675 * 4 3 2 6 6 N 1.38924 * 119.79478 * 179.76256 * 5 4 3 7 7 C 1.46494 * 120.00090 * 179.72320 * 6 5 4 8 8 C 1.52992 * 109.47506 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47391 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47193 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46904 * 180.02562 * 10 9 8 12 12 C 1.38221 * 119.62071 * 124.72750 * 11 10 9 13 13 C 1.38622 * 119.16390 * 179.75069 * 12 11 10 14 14 C 1.38674 * 118.41935 * 0.51039 * 13 12 11 15 15 C 1.38176 * 119.16047 * 359.73052 * 14 13 12 16 16 N 1.31859 * 119.61648 * 304.99834 * 11 10 9 17 17 C 1.39715 * 120.40628 * 359.48676 * 5 4 3 18 18 C 1.36224 * 120.42846 * 0.25500 * 17 5 4 19 19 C 1.40855 * 120.01272 * 0.02562 * 18 17 5 20 20 C 1.40961 * 120.20578 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00530 * 204.84704 * 20 19 18 22 22 C 1.39847 * 119.99887 * 24.84085 * 20 19 18 23 23 N 1.30952 * 119.99874 * 17.84732 * 22 20 19 24 24 Si 1.86803 * 120.00085 * 197.83862 * 22 20 19 25 25 H 1.48494 * 109.47200 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46936 * 120.00219 * 24 22 20 27 27 H 1.48498 * 109.47427 * 240.00160 * 24 22 20 28 28 H 1.08995 * 109.46800 * 299.99777 * 1 2 3 29 29 H 1.08996 * 109.47010 * 60.00105 * 1 2 3 30 30 H 1.09006 * 109.46393 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.01225 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99900 * 359.73147 * 6 5 4 33 33 H 1.09007 * 109.47376 * 59.99990 * 7 6 5 34 34 H 1.09003 * 109.47312 * 300.00174 * 7 6 5 35 35 H 1.09006 * 109.47219 * 60.00031 * 8 7 6 36 36 H 1.08997 * 109.47493 * 300.00267 * 8 7 6 37 37 H 1.08997 * 109.46978 * 60.00043 * 9 8 7 38 38 H 1.08998 * 109.46922 * 300.00023 * 9 8 7 39 39 H 1.08997 * 109.47083 * 60.00156 * 10 9 8 40 40 H 1.08998 * 109.47245 * 299.99874 * 10 9 8 41 41 H 1.08010 * 120.41495 * 359.97438 * 12 11 10 42 42 H 1.07997 * 120.79039 * 180.26598 * 13 12 11 43 43 H 1.07996 * 120.41492 * 179.71018 * 14 13 12 44 44 H 1.08003 * 119.61350 * 179.97438 * 15 14 13 45 45 H 1.08002 * 119.78931 * 180.27980 * 17 5 4 46 46 H 1.08007 * 119.99972 * 179.97438 * 18 17 5 47 47 H 0.96997 * 120.00076 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2974 2.3693 0.0049 5 6 1.9344 3.6072 -0.0009 6 7 1.1782 4.7726 -0.0010 7 6 1.8438 6.0776 -0.0010 8 6 0.7907 7.1874 -0.0004 9 6 1.4859 8.5504 0.0002 10 6 0.4327 9.6602 0.0002 11 6 1.1175 11.0026 0.0002 12 6 0.8182 11.9222 -0.9874 13 6 1.4499 13.1561 -0.9753 14 6 2.3711 13.4161 0.0281 15 6 2.6228 12.4457 0.9790 16 7 1.9993 11.2843 0.9392 17 6 3.3294 3.6846 -0.0010 18 6 4.0833 2.5501 -0.0005 19 6 3.4574 1.2882 -0.0006 20 6 4.2336 0.1116 -0.0006 21 1 3.8226 -0.8066 -0.3937 22 6 5.5361 0.1331 0.5081 23 7 5.9181 1.1129 1.2885 24 14 6.7310 -1.2359 0.0747 25 1 6.0591 -2.2155 -0.8163 26 1 7.9102 -0.6615 -0.6217 27 1 7.1736 -1.9184 1.3170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 0.2186 2.3169 0.0092 32 1 0.2095 4.7223 -0.0009 33 1 2.4667 6.1679 -0.8910 34 1 2.4667 6.1679 0.8890 35 1 0.1682 7.0971 0.8899 36 1 0.1675 7.0974 -0.8901 37 1 2.1087 8.6410 -0.8897 38 1 2.1088 8.6401 0.8902 39 1 -0.1904 9.5697 0.8899 40 1 -0.1898 9.5703 -0.8900 41 1 0.0985 11.6837 -1.7567 42 1 1.2327 13.8958 -1.7316 43 1 2.8855 14.3650 0.0655 44 1 3.3392 12.6403 1.7634 45 1 3.8132 4.6502 -0.0010 46 1 5.1613 2.6180 -0.0010 47 1 6.8216 1.1280 1.6411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168795033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:57 Heat of formation + Delta-G solvation = -11.351239 kcal Electronic energy + Delta-G solvation = -25574.933144 eV Core-core repulsion = 21914.325198 eV Total energy + Delta-G solvation = -3660.607947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.08275 -40.50569 -38.62257 -37.18154 -35.94879 -34.50287 -33.27854 -32.59371 -30.76169 -30.63783 -28.72528 -27.99703 -26.12788 -24.93989 -24.36275 -23.14470 -22.53386 -21.79772 -21.54303 -19.22267 -18.38864 -17.72760 -17.34776 -17.16084 -16.70845 -16.48851 -16.29081 -16.19189 -16.04479 -15.57746 -15.50285 -15.09333 -14.54850 -14.51409 -14.37880 -13.97317 -13.92133 -13.56912 -13.33306 -13.20738 -12.88804 -12.76772 -12.72337 -12.55995 -12.37917 -12.17271 -12.08043 -11.99610 -11.78919 -11.51407 -11.46460 -11.36076 -10.97840 -10.77169 -10.29205 -10.15167 -9.84579 -8.93091 -8.50128 -8.17483 -5.89458 0.21148 0.40494 1.10285 1.12549 1.40605 1.55026 1.56903 2.31406 2.76527 2.85813 2.90460 3.00701 3.43302 3.76443 3.79214 4.00912 4.04304 4.09888 4.26291 4.28731 4.36873 4.37686 4.49696 4.49965 4.52084 4.58676 4.64408 4.70953 4.76384 4.82266 4.85937 4.91584 4.99424 5.02005 5.07986 5.25201 5.25863 5.31091 5.32416 5.40413 5.45700 5.46804 5.62567 5.85308 5.89201 6.08624 6.28475 6.52039 6.81510 6.93837 7.09521 7.11781 7.20210 7.39504 8.54732 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.001963 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.945836 B =14261.912912 C =15674.566268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C 0.047 3.953 4 C -0.251 4.251 5 C 0.149 3.851 6 N -0.748 5.748 7 C 0.134 3.866 8 C -0.112 4.112 9 C -0.099 4.099 10 C -0.064 4.064 11 C 0.109 3.891 12 C -0.178 4.178 13 C -0.079 4.079 14 C -0.181 4.181 15 C 0.081 3.919 16 N -0.517 5.517 17 C -0.207 4.207 18 C -0.115 4.115 19 C 0.010 3.990 20 C -0.486 4.486 21 H 0.062 0.938 22 C 0.027 3.973 23 N -0.847 5.847 24 Si 0.975 3.025 25 H -0.264 1.264 26 H -0.265 1.265 27 H -0.269 1.269 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.399 0.601 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 22.556 -4.322 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C 0.001 3.999 4 C -0.274 4.274 5 C 0.048 3.952 6 N -0.383 5.383 7 C 0.009 3.991 8 C -0.150 4.150 9 C -0.138 4.138 10 C -0.102 4.102 11 C -0.028 4.028 12 C -0.197 4.197 13 C -0.105 4.105 14 C -0.201 4.201 15 C -0.076 4.076 16 N -0.227 5.227 17 C -0.230 4.230 18 C -0.135 4.135 19 C 0.007 3.993 20 C -0.518 4.518 21 H 0.080 0.920 22 C -0.183 4.183 23 N -0.477 5.477 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.190 1.190 27 H -0.195 1.195 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.233 0.767 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.173 0.827 42 H 0.179 0.821 43 H 0.177 0.823 44 H 0.184 0.816 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.989 21.962 -3.549 24.813 hybrid contribution 0.248 0.081 -0.415 0.490 sum -10.741 22.043 -3.964 24.839 Atomic orbital electron populations 1.23083 0.78598 1.04135 1.00998 1.85940 1.21596 1.27937 1.89866 1.19154 0.91956 0.83590 1.05196 1.20324 0.98625 0.90704 1.17759 1.17200 0.90210 0.86320 1.01421 1.43972 1.07106 1.01829 1.85355 1.21157 0.95837 0.82578 0.99484 1.21638 0.97453 0.92454 1.03472 1.21283 0.97807 0.92665 1.02020 1.20568 0.97037 0.88323 1.04273 1.21609 0.93340 0.97000 0.90849 1.22315 1.02365 0.94750 1.00279 1.22016 0.93765 0.96839 0.97837 1.22463 0.99851 1.01814 0.95964 1.23154 0.97284 0.88673 0.98476 1.67460 1.08305 1.21699 1.25214 1.20150 0.92394 0.97516 1.12894 1.20615 0.98943 0.91142 1.02815 1.17284 0.88829 0.94458 0.98731 1.19300 0.98435 0.96311 1.37778 0.92025 1.26563 1.00017 0.99294 0.92449 1.69938 1.19495 1.33244 1.24975 0.85266 0.77777 0.78343 0.78881 1.18781 1.18964 1.19451 0.93140 0.92765 0.87144 0.85336 0.76674 0.94021 0.94743 0.90782 0.89940 0.92476 0.92536 0.89910 0.88092 0.82680 0.82101 0.82324 0.81567 0.87846 0.87678 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.81 113.37 1.11 2.00 16 2 O -0.34 -16.30 9.78 -89.89 -0.88 -17.18 16 3 C 0.05 2.42 6.71 23.02 0.15 2.58 16 4 C -0.25 -11.16 8.86 22.46 0.20 -10.96 16 5 C 0.15 6.48 6.66 38.61 0.26 6.73 16 6 N -0.75 -24.58 5.70 -339.12 -1.93 -26.51 16 7 C 0.13 3.82 4.89 86.38 0.42 4.24 16 8 C -0.11 -2.20 5.33 30.59 0.16 -2.04 16 9 C -0.10 -1.93 5.07 30.60 0.16 -1.77 16 10 C -0.06 -1.00 5.62 29.85 0.17 -0.83 16 11 C 0.11 2.01 6.18 42.55 0.26 2.27 16 12 C -0.18 -2.42 9.71 22.36 0.22 -2.20 16 13 C -0.08 -0.89 10.18 22.47 0.23 -0.66 16 14 C -0.18 -2.20 10.11 22.36 0.23 -1.98 16 15 C 0.08 1.36 11.18 84.67 0.95 2.31 16 16 N -0.52 -11.31 9.88 -183.89 -1.82 -13.13 16 17 C -0.21 -10.08 9.22 22.16 0.20 -9.88 16 18 C -0.11 -6.42 8.62 22.44 0.19 -6.22 16 19 C 0.01 0.59 5.58 -21.17 -0.12 0.47 16 20 C -0.49 -28.94 8.70 23.33 0.20 -28.73 16 21 H 0.06 3.69 7.65 -2.91 -0.02 3.67 16 22 C 0.03 1.50 5.13 85.21 0.44 1.94 16 23 N -0.85 -48.12 10.97 21.82 0.24 -47.88 16 24 Si 0.98 42.42 29.60 68.60 2.03 44.45 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 29 H 0.05 1.61 7.67 -2.39 -0.02 1.60 16 30 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 31 H 0.13 4.74 6.29 -2.91 -0.02 4.73 16 32 H 0.40 10.89 8.47 -92.70 -0.79 10.10 16 33 H 0.04 1.25 7.92 -2.38 -0.02 1.24 16 34 H 0.03 1.10 7.92 -2.39 -0.02 1.08 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.09 7.87 -2.39 -0.02 1.07 16 41 H 0.16 1.31 7.95 -2.91 -0.02 1.28 16 42 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.10 4.63 6.67 -2.91 -0.02 4.61 16 46 H 0.11 6.17 6.17 -2.91 -0.02 6.15 16 47 H 0.28 14.47 8.30 -92.71 -0.77 13.71 16 Total: -1.00 -73.73 388.18 3.26 -70.47 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.19 Total: 32.51 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 5.43 Total: -42.73 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -3.51 Total: -87.52 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.88 Total: -17.18 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -73.73 3.26 -70.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168795033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.123 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds