Wall clock time and date at job start Tue Mar 31 2020 14:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36354 * 120.08285 * 2 1 4 4 C 1.39554 * 120.16484 * 179.97438 * 3 2 1 5 5 N 1.38850 * 119.84439 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99913 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46847 * 180.02562 * 6 5 4 8 8 N 1.34300 * 126.05987 * 269.68672 * 7 6 5 9 9 C 1.30675 * 109.28467 * 179.80072 * 8 7 6 10 10 N 1.34694 * 108.57557 * 359.92308 * 9 8 7 11 11 C 1.34270 * 126.06541 * 90.00136 * 7 6 5 12 12 C 1.50654 * 127.35228 * 1.40603 * 11 7 6 13 13 N 1.47068 * 109.04045 * 206.60007 * 12 11 7 14 14 C 1.46388 * 111.33296 * 270.80749 * 13 12 11 15 15 C 1.52500 * 111.20906 * 62.33697 * 14 13 12 16 16 C 1.46522 * 127.29973 * 181.26409 * 10 9 8 17 17 C 1.39590 * 120.30915 * 0.02562 * 4 3 2 18 18 C 1.36323 * 120.16439 * 0.02562 * 17 4 3 19 19 C 1.40876 * 120.08334 * 180.02562 * 2 1 3 20 20 C 1.41136 * 120.15410 * 0.27290 * 19 2 1 21 21 H 1.08005 * 120.00046 * 333.36963 * 20 19 2 22 22 C 1.39865 * 119.99954 * 153.36599 * 20 19 2 23 23 N 1.30901 * 120.00049 * 343.94599 * 22 20 19 24 24 Si 1.86801 * 119.99671 * 163.94428 * 22 20 19 25 25 H 1.48495 * 109.47484 * 90.00166 * 24 22 20 26 26 H 1.48507 * 109.46772 * 210.00175 * 24 22 20 27 27 H 1.48497 * 109.47065 * 329.99720 * 24 22 20 28 28 H 1.09005 * 109.46742 * 269.97292 * 1 2 3 29 29 H 1.09000 * 109.47349 * 29.97583 * 1 2 3 30 30 H 1.09001 * 109.46913 * 149.97616 * 1 2 3 31 31 H 1.08001 * 119.91935 * 0.02562 * 3 2 1 32 32 H 0.97004 * 120.00111 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.47042 * 299.99584 * 6 5 4 34 34 H 1.08998 * 109.47267 * 59.99944 * 6 5 4 35 35 H 1.08003 * 125.70614 * 179.62940 * 9 8 7 36 36 H 1.09000 * 109.54448 * 326.46713 * 12 11 7 37 37 H 1.09004 * 109.54190 * 86.73053 * 12 11 7 38 38 H 1.00901 * 110.99840 * 35.00339 * 13 12 11 39 39 H 1.09000 * 109.13175 * 301.89247 * 14 13 12 40 40 H 1.09000 * 109.13104 * 182.78719 * 14 13 12 41 41 H 1.09005 * 109.42114 * 273.70981 * 15 14 13 42 42 H 1.09005 * 109.36294 * 153.87057 * 15 14 13 43 43 H 1.08998 * 109.53584 * 346.13886 * 16 10 9 44 44 H 1.08999 * 109.53829 * 106.36943 * 16 10 9 45 45 H 1.08003 * 119.91371 * 179.97438 * 17 4 3 46 46 H 1.08003 * 120.07665 * 179.97438 * 18 17 4 47 47 H 0.97003 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5860 1.1819 0.0005 5 7 4.2752 2.3872 0.0000 6 6 5.7402 2.3933 0.0000 7 6 6.2366 3.8162 0.0000 8 7 6.5026 4.5607 -1.0857 9 6 6.9088 5.7441 -0.7086 10 7 6.9114 5.7880 0.6377 11 6 6.4970 4.5626 1.0854 12 6 6.3833 4.1472 2.5290 13 7 6.1303 5.3390 3.3527 14 6 7.3820 5.9583 3.7918 15 6 8.2043 6.4436 2.6028 16 6 7.2701 6.9258 1.4882 17 6 4.2922 -0.0222 0.0005 18 6 3.6220 -1.2094 -0.0005 19 6 2.2131 -1.2190 -0.0005 20 6 1.5125 -2.4442 -0.0069 21 1 0.5169 -2.4991 0.4081 22 6 2.1075 -3.5872 -0.5507 23 7 3.1571 -3.4735 -1.3246 24 14 1.4043 -5.2759 -0.1725 25 1 0.3823 -5.6262 -1.1913 26 1 2.4950 -6.2835 -0.1988 27 1 0.7768 -5.2608 1.1733 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6505 2.1152 0.0004 32 1 3.7868 3.2253 -0.0004 33 1 6.1057 1.8814 0.8902 34 1 6.1057 1.8806 -0.8897 35 1 7.1987 6.5502 -1.3663 36 1 5.5582 3.4440 2.6422 37 1 7.3129 3.6748 2.8469 38 1 5.5518 6.0029 2.8600 39 1 7.9637 5.2281 4.3543 40 1 7.1537 6.8059 4.4381 41 1 8.8207 5.6253 2.2303 42 1 8.8461 7.2660 2.9188 43 1 7.7772 7.6827 0.8898 44 1 6.3679 7.3513 1.9276 45 1 5.3722 -0.0132 0.0005 46 1 4.1698 -2.1402 -0.0009 47 1 3.5700 -4.2663 -1.7014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169242774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:52 Heat of formation + Delta-G solvation = 71.650919 kcal Electronic energy + Delta-G solvation = -27034.029896 eV Core-core repulsion = 23409.313944 eV Total energy + Delta-G solvation = -3624.715952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.44468 -39.87844 -38.74655 -37.03404 -35.25661 -34.52075 -32.74590 -32.62429 -31.52492 -29.91907 -28.18048 -27.17322 -26.89288 -25.72988 -25.15926 -22.79671 -21.92849 -21.84708 -21.03189 -20.53422 -18.96446 -18.17632 -17.67825 -17.28076 -16.79473 -16.43404 -16.19755 -15.97849 -15.52716 -15.50513 -14.91758 -14.74100 -14.58747 -14.48690 -14.44402 -14.02494 -13.96582 -13.75582 -13.46262 -13.44046 -13.01773 -12.83372 -12.73285 -12.69453 -12.66665 -12.41801 -12.36644 -12.13131 -11.83303 -11.38234 -11.10542 -11.03600 -10.96388 -10.53249 -10.18188 -9.78104 -9.25338 -9.15332 -8.46781 -8.09402 -5.93158 0.90533 1.14571 1.23339 1.42267 1.54550 1.62555 1.75025 1.93017 2.31017 2.90869 3.10955 3.17288 3.52286 3.57385 3.68774 3.77362 3.87060 3.96739 4.16234 4.20778 4.24101 4.36863 4.48021 4.49049 4.53168 4.64265 4.71876 4.80078 4.83007 4.90307 4.98426 4.99457 5.06251 5.08575 5.18148 5.26790 5.34562 5.37271 5.55217 5.59713 5.78825 5.87693 5.96116 6.00475 6.21387 6.28026 6.28351 6.48763 6.72872 6.92359 7.06835 7.16219 7.17761 7.35554 8.56179 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.002420 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.819748 B =11568.636353 C =11619.928904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.164 4.164 3 C -0.169 4.169 4 C 0.119 3.881 5 N -0.741 5.741 6 C 0.229 3.771 7 C -0.025 4.025 8 N -0.528 5.528 9 C 0.190 3.810 10 N -0.451 5.451 11 C -0.030 4.030 12 C 0.139 3.861 13 N -0.687 5.687 14 C 0.048 3.952 15 C -0.165 4.165 16 C 0.093 3.907 17 C -0.183 4.183 18 C -0.138 4.138 19 C 0.035 3.965 20 C -0.492 4.492 21 H 0.073 0.927 22 C 0.028 3.972 23 N -0.847 5.847 24 Si 0.973 3.027 25 H -0.266 1.266 26 H -0.273 1.273 27 H -0.260 1.260 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.390 0.610 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.345 0.655 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.131 23.142 8.738 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.166 4.166 3 C -0.192 4.192 4 C 0.020 3.980 5 N -0.376 5.376 6 C 0.103 3.897 7 C -0.154 4.154 8 N -0.247 5.247 9 C -0.093 4.093 10 N -0.134 5.134 11 C -0.148 4.148 12 C 0.008 3.992 13 N -0.317 5.317 14 C -0.081 4.081 15 C -0.205 4.205 16 C -0.028 4.028 17 C -0.205 4.205 18 C -0.159 4.159 19 C 0.033 3.967 20 C -0.524 4.524 21 H 0.092 0.908 22 C -0.183 4.183 23 N -0.476 5.476 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.198 1.198 27 H -0.184 1.184 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.224 0.776 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.258 0.742 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.165 0.835 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.355 22.455 8.483 26.554 hybrid contribution 0.203 -0.223 -0.536 0.615 sum 11.558 22.232 7.947 26.287 Atomic orbital electron populations 1.20399 0.91573 1.01040 1.00685 1.19758 0.96020 0.92527 1.08261 1.19923 0.91849 0.96972 1.10410 1.17447 0.90840 0.85772 1.03964 1.43847 1.03698 1.04202 1.85813 1.19002 0.81029 0.89924 0.99745 1.20215 1.08977 0.97063 0.89119 1.70258 1.18753 1.04160 1.31547 1.25585 1.03524 0.97771 0.82427 1.45675 1.49042 1.11077 1.07603 1.21883 1.07177 0.87418 0.98340 1.20602 1.02761 0.93867 0.81961 1.60587 1.17632 1.09606 1.43851 1.22161 0.89252 1.00232 0.96477 1.22611 0.99036 1.03167 0.95701 1.22344 1.01084 0.86486 0.92905 1.20176 0.97797 0.91969 1.10547 1.20828 0.94890 0.96092 1.04045 1.17693 0.92116 0.92870 0.94061 1.19537 1.02358 0.93843 1.36663 0.90844 1.26615 0.94777 1.04449 0.92425 1.69942 1.20817 1.32217 1.24641 0.85345 0.78565 0.76891 0.79683 1.19110 1.19750 1.18376 0.92516 0.92151 0.93116 0.87129 0.77629 0.91998 0.94670 0.74214 0.89636 0.89298 0.83458 0.90526 0.88262 0.92594 0.86479 0.85291 0.88480 0.88333 0.88563 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.42 9.40 71.23 0.67 -2.75 16 2 C -0.16 -8.25 5.90 -19.66 -0.12 -8.37 16 3 C -0.17 -7.82 9.46 22.15 0.21 -7.61 16 4 C 0.12 5.44 6.67 38.67 0.26 5.70 16 5 N -0.74 -27.97 5.69 -342.70 -1.95 -29.92 16 6 C 0.23 7.90 5.16 85.63 0.44 8.34 16 7 C -0.03 -0.74 6.46 41.28 0.27 -0.48 16 8 N -0.53 -15.71 11.26 -188.62 -2.12 -17.84 16 9 C 0.19 3.69 12.59 180.32 2.27 5.96 16 10 N -0.45 -7.29 2.91 -514.68 -1.50 -8.79 16 11 C -0.03 -0.66 6.16 40.85 0.25 -0.41 16 12 C 0.14 2.74 6.05 85.51 0.52 3.26 16 13 N -0.69 -10.18 6.78 -519.72 -3.52 -13.71 16 14 C 0.05 0.42 6.22 86.23 0.54 0.96 16 15 C -0.17 -1.05 5.64 30.50 0.17 -0.87 16 16 C 0.09 0.62 6.11 86.45 0.53 1.15 16 17 C -0.18 -9.13 9.23 22.15 0.20 -8.93 16 18 C -0.14 -7.78 8.61 22.47 0.19 -7.59 16 19 C 0.04 2.01 5.56 -21.27 -0.12 1.89 16 20 C -0.49 -27.77 8.09 23.38 0.19 -27.58 16 21 H 0.07 3.97 6.89 -2.91 -0.02 3.95 16 22 C 0.03 1.52 5.16 85.23 0.44 1.96 16 23 N -0.85 -47.87 10.97 21.82 0.24 -47.64 16 24 Si 0.97 41.15 29.59 68.60 2.03 43.18 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 28 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 30 H 0.05 2.25 6.77 -2.39 -0.02 2.24 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.39 13.77 8.46 -92.70 -0.78 12.99 16 33 H 0.06 2.05 7.70 -2.39 -0.02 2.03 16 34 H 0.04 1.38 7.93 -2.39 -0.02 1.36 16 35 H 0.24 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 37 H 0.09 1.66 7.72 -2.38 -0.02 1.64 16 38 H 0.35 4.81 6.47 -89.69 -0.58 4.23 16 39 H 0.08 0.76 8.01 -2.39 -0.02 0.74 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.63 7.97 -2.38 -0.02 0.61 16 42 H 0.12 0.13 8.14 -2.38 -0.02 0.12 16 43 H 0.13 0.15 8.11 -2.39 -0.02 0.13 16 44 H 0.10 0.50 6.59 -2.39 -0.02 0.48 16 45 H 0.10 4.57 6.68 -2.91 -0.02 4.55 16 46 H 0.10 5.70 6.23 -2.91 -0.02 5.68 16 47 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 Total: -1.00 -72.06 371.50 -0.27 -72.33 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.36 Total: 37.74 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 6.91 Total: -35.37 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -8.86 Total: -117.89 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -72.06 -0.27 -72.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169242774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.984 kcal (2) G-P(sol) polarization free energy of solvation -72.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds