Wall clock time and date at job start Tue Mar 31 2020 14:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36361 * 119.92249 * 2 1 4 4 C 1.40867 * 119.83453 * 180.25103 * 3 2 1 5 5 C 1.41136 * 120.15504 * 179.71949 * 4 3 2 6 6 H 1.08003 * 120.00186 * 204.62974 * 5 4 3 7 7 C 1.39863 * 119.99935 * 24.62020 * 5 4 3 8 8 N 1.30910 * 119.99956 * 17.97134 * 7 5 4 9 9 Si 1.86803 * 120.00413 * 197.96873 * 7 5 4 10 10 H 1.48507 * 109.46772 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47557 * 120.00220 * 9 7 5 12 12 H 1.48497 * 109.47451 * 240.00808 * 9 7 5 13 13 C 1.40902 * 119.69351 * 359.73870 * 4 3 2 14 14 C 1.36327 * 119.83482 * 359.97438 * 13 4 3 15 15 C 1.39553 * 119.91946 * 179.73620 * 2 1 3 16 16 N 1.38859 * 119.83883 * 0.02562 * 15 2 1 17 17 C 1.46500 * 119.99988 * 179.72322 * 16 15 2 18 18 C 1.50701 * 109.47333 * 180.02562 * 17 16 15 19 19 N 1.34293 * 126.06566 * 269.96063 * 18 17 16 20 20 C 1.30674 * 109.28927 * 180.02562 * 19 18 17 21 21 N 1.34699 * 108.57005 * 359.48986 * 20 19 18 22 22 C 1.34277 * 126.06487 * 89.99966 * 18 17 16 23 23 C 1.50661 * 127.32586 * 1.28248 * 22 18 17 24 24 N 1.47061 * 109.03518 * 206.72402 * 23 22 18 25 25 C 1.46389 * 111.34005 * 270.81488 * 24 23 22 26 26 C 1.52515 * 111.20284 * 62.33696 * 25 24 23 27 27 C 1.46536 * 127.29964 * 181.67029 * 21 20 19 28 28 H 1.09002 * 109.47241 * 270.26363 * 1 2 3 29 29 H 1.09000 * 109.47005 * 30.26005 * 1 2 3 30 30 H 1.08996 * 109.47203 * 150.26555 * 1 2 3 31 31 H 1.08000 * 120.08190 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99463 * 179.97438 * 8 7 5 33 33 H 1.07996 * 120.08218 * 179.97438 * 13 4 3 34 34 H 1.07996 * 119.92056 * 179.97438 * 14 13 4 35 35 H 0.97003 * 120.00129 * 359.72944 * 16 15 2 36 36 H 1.09003 * 109.46700 * 60.00537 * 17 16 15 37 37 H 1.09001 * 109.47051 * 300.00648 * 17 16 15 38 38 H 1.08003 * 125.71587 * 179.50121 * 20 19 18 39 39 H 1.09003 * 109.54291 * 326.58759 * 23 22 18 40 40 H 1.09000 * 109.54236 * 86.85261 * 23 22 18 41 41 H 1.00902 * 110.99993 * 146.62152 * 24 23 22 42 42 H 1.09002 * 109.13262 * 182.77204 * 25 24 23 43 43 H 1.08994 * 109.13748 * 301.89268 * 25 24 23 44 44 H 1.08993 * 109.41615 * 153.91534 * 26 25 24 45 45 H 1.09004 * 109.40862 * 273.70661 * 26 25 24 46 46 H 1.09002 * 109.53488 * 345.97654 * 27 21 20 47 47 H 1.08998 * 109.53530 * 106.21690 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 -0.0054 5 6 4.3067 2.3990 -0.0114 6 1 5.3117 2.4362 -0.4051 7 6 3.7095 3.5591 0.4924 8 7 2.6642 3.4701 1.2754 9 14 4.4035 5.2355 0.0480 10 1 5.5778 5.0642 -0.8449 11 1 3.3634 6.0327 -0.6503 12 1 4.8212 5.9422 1.2854 13 6 4.2919 -0.0454 -0.0051 14 6 3.5988 -1.2193 0.0009 15 6 2.2030 -1.2095 0.0056 16 7 1.5037 -2.4091 0.0106 17 6 2.2308 -3.6810 0.0103 18 6 1.2467 -4.8223 0.0156 19 7 0.7347 -5.4197 1.1039 20 6 -0.0833 -6.3680 0.7312 21 7 -0.1245 -6.3945 -0.6149 22 6 0.7268 -5.4228 -1.0670 23 6 1.0233 -5.1169 -2.5122 24 7 -0.1392 -5.4934 -3.3304 25 6 -0.0524 -6.8871 -3.7697 26 6 -0.0565 -7.8417 -2.5803 27 6 -0.9349 -7.2742 -1.4614 28 1 -0.3634 0.0047 1.0277 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5097 31 1 1.6472 2.1172 -0.0004 32 1 2.2503 4.2747 1.6250 33 1 5.3718 -0.0544 -0.0096 34 1 4.1309 -2.1590 0.0007 35 1 0.5336 -2.4051 0.0141 36 1 2.8605 -3.7396 0.8981 37 1 2.8539 -3.7430 -0.8819 38 1 -0.6343 -7.0211 1.3917 39 1 1.2195 -4.0507 -2.6263 40 1 1.8955 -5.6860 -2.8339 41 1 -0.2434 -4.8718 -4.1184 42 1 -0.9038 -7.1130 -4.4118 43 1 0.8681 -7.0265 -4.3364 44 1 -0.4489 -8.8091 -2.8934 45 1 0.9620 -7.9667 -2.2126 46 1 -1.3340 -8.0917 -0.8608 47 1 -1.7565 -6.7055 -1.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169243602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:21 Heat of formation + Delta-G solvation = 90.506681 kcal Electronic energy + Delta-G solvation = -27178.878410 eV Core-core repulsion = 23554.980106 eV Total energy + Delta-G solvation = -3623.898305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32110 -38.13623 -37.76314 -35.33223 -34.12392 -32.82342 -31.73078 -31.52507 -30.10255 -28.33445 -26.43957 -26.27744 -25.72774 -24.40386 -23.62917 -21.18336 -21.02938 -20.23000 -19.74443 -19.30316 -17.14776 -16.79226 -16.53995 -16.38334 -15.64681 -15.30481 -15.03922 -14.66812 -14.56635 -14.11633 -13.93828 -13.49562 -13.25843 -13.04534 -12.95041 -12.68986 -12.61678 -12.33529 -12.04271 -11.86590 -11.78282 -11.66880 -11.57119 -11.42262 -11.26201 -10.91052 -10.87809 -10.61307 -10.29087 -9.86071 -9.58484 -9.46080 -9.20686 -9.12150 -8.98269 -8.40633 -8.24297 -7.20547 -6.54313 -6.21803 -3.92642 1.99498 2.72170 2.97529 3.07155 3.17299 3.20953 3.26256 3.44752 3.68767 4.12864 4.24179 4.28013 4.53393 4.56219 4.70124 4.76806 4.85413 4.88789 4.97700 5.01933 5.15407 5.24318 5.34449 5.38669 5.52390 5.58786 5.85944 6.01936 6.11939 6.21237 6.25387 6.29418 6.43922 6.54240 6.55899 6.70048 6.74478 6.89709 6.93545 7.20221 7.21652 7.37708 7.42718 7.73302 7.80319 7.93039 8.14563 8.26944 8.46920 8.62815 8.81155 8.93460 9.16446 9.27211 10.47095 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.002459 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.061025 B =11384.056636 C =11604.044668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.138 4.138 3 C -0.119 4.119 4 C 0.073 3.927 5 C -0.467 4.467 6 H 0.071 0.929 7 C 0.074 3.926 8 N -0.808 5.808 9 Si 0.900 3.100 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.278 1.278 13 C -0.188 4.188 14 C -0.161 4.161 15 C 0.104 3.896 16 N -0.752 5.752 17 C 0.224 3.776 18 C -0.005 4.005 19 N -0.478 5.478 20 C 0.172 3.828 21 N -0.445 5.445 22 C 0.006 3.994 23 C 0.130 3.870 24 N -0.693 5.693 25 C 0.054 3.946 26 C -0.136 4.136 27 C 0.118 3.882 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.274 0.726 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.386 0.614 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.202 0.798 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.355 0.645 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 -21.462 -9.240 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C -0.139 4.139 4 C 0.070 3.930 5 C -0.498 4.498 6 H 0.090 0.910 7 C -0.141 4.141 8 N -0.436 5.436 9 Si 0.725 3.275 10 H -0.187 1.187 11 H -0.201 1.201 12 H -0.204 1.204 13 C -0.209 4.209 14 C -0.183 4.183 15 C 0.006 3.994 16 N -0.389 5.389 17 C 0.098 3.902 18 C -0.134 4.134 19 N -0.196 5.196 20 C -0.110 4.110 21 N -0.129 5.129 22 C -0.111 4.111 23 C 0.000 4.000 24 N -0.325 5.325 25 C -0.076 4.076 26 C -0.175 4.175 27 C -0.004 4.004 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.220 0.780 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.218 0.782 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.174 0.826 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.122 -21.474 -7.837 24.613 hybrid contribution 0.324 0.488 -1.409 1.526 sum -8.798 -20.986 -9.246 24.562 Atomic orbital electron populations 1.20450 0.94101 1.00038 1.00270 1.18859 0.93648 0.92429 1.09218 1.20817 0.94380 0.95607 1.03061 1.17462 0.91802 0.92033 0.91660 1.19364 1.01132 0.92485 1.36837 0.91047 1.25778 0.94493 1.00834 0.92949 1.69879 1.19553 1.30398 1.23737 0.86406 0.79827 0.82172 0.79061 1.18715 1.20067 1.20368 1.20541 0.97390 0.92344 1.10593 1.19843 0.91710 0.96920 1.09863 1.17149 0.90713 0.84344 1.07151 1.43949 1.06747 1.01399 1.86843 1.19073 0.90780 0.79875 1.00447 1.20447 1.03953 1.01216 0.87832 1.70324 1.11158 1.07883 1.30279 1.24825 1.02936 1.01556 0.81724 1.45307 1.32879 1.27535 1.07148 1.20805 0.98832 0.95246 0.96182 1.20415 0.90937 1.01970 0.86708 1.60005 1.42392 1.03611 1.26490 1.21857 1.01066 0.88538 0.96112 1.21969 1.00972 0.99042 0.95482 1.21746 0.93979 0.92941 0.91774 0.93204 0.92967 0.93970 0.86336 0.91513 0.89250 0.89420 0.77986 0.92386 0.92879 0.78170 0.88283 0.92648 0.82591 0.90343 0.94573 0.89431 0.91151 0.89539 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.55 36.00 0.34 -1.48 16 2 C -0.14 -3.29 5.86 -104.81 -0.61 -3.90 16 3 C -0.12 -3.18 8.27 -39.26 -0.32 -3.50 16 4 C 0.07 2.03 5.57 -106.80 -0.60 1.43 16 5 C -0.47 -12.98 9.03 -37.87 -0.34 -13.32 16 6 H 0.07 1.92 7.91 -52.48 -0.41 1.51 16 7 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 8 N -0.81 -22.02 10.96 55.54 0.61 -21.41 16 9 Si 0.90 19.70 29.60 -169.99 -5.03 14.67 16 10 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 C -0.19 -4.80 9.74 -39.26 -0.38 -5.19 16 14 C -0.16 -3.75 9.23 -39.77 -0.37 -4.12 16 15 C 0.10 2.35 6.65 -83.69 -0.56 1.80 16 16 N -0.75 -14.33 5.59 -59.67 -0.33 -14.66 16 17 C 0.22 3.78 5.16 -5.19 -0.03 3.75 16 18 C 0.00 -0.07 6.46 -82.91 -0.54 -0.61 16 19 N -0.48 -7.57 11.26 -10.97 -0.12 -7.69 16 20 C 0.17 2.03 12.59 -90.54 -1.14 0.89 16 21 N -0.45 -4.73 2.92 -114.06 -0.33 -5.06 16 22 C 0.01 0.08 6.41 -81.76 -0.52 -0.45 16 23 C 0.13 1.32 5.95 -4.91 -0.03 1.29 16 24 N -0.69 -5.46 5.69 -115.62 -0.66 -6.12 16 25 C 0.05 0.31 6.13 -4.35 -0.03 0.28 16 26 C -0.14 -0.77 5.63 -26.90 -0.15 -0.92 16 27 C 0.12 0.80 6.26 -3.95 -0.02 0.78 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 30 H 0.04 0.75 6.53 -51.93 -0.34 0.41 16 31 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 32 H 0.27 6.84 8.30 -40.82 -0.34 6.50 16 33 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 35 H 0.39 7.20 6.42 -40.82 -0.26 6.94 16 36 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 38 H 0.20 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.10 1.11 8.03 -51.93 -0.42 0.70 16 40 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 41 H 0.35 2.35 8.90 -39.29 -0.35 2.00 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.04 0.21 8.01 -51.93 -0.42 -0.21 16 44 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 46 H 0.09 0.38 8.12 -51.93 -0.42 -0.04 16 47 H 0.10 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -32.15 373.53 -12.61 -44.76 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.98 Total: 11.28 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -5.39 Total: -21.39 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.84 Total: -54.94 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -12.61 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169243602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.263 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds