Wall clock time and date at job start Tue Mar 31 2020 14:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36361 * 119.92249 * 2 1 4 4 C 1.40867 * 119.83453 * 180.25103 * 3 2 1 5 5 C 1.41136 * 120.15504 * 179.71949 * 4 3 2 6 6 H 1.08003 * 120.00186 * 204.62974 * 5 4 3 7 7 C 1.39863 * 119.99935 * 24.62020 * 5 4 3 8 8 N 1.30910 * 119.99956 * 17.97134 * 7 5 4 9 9 Si 1.86803 * 120.00413 * 197.96873 * 7 5 4 10 10 H 1.48507 * 109.46772 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47557 * 120.00220 * 9 7 5 12 12 H 1.48497 * 109.47451 * 240.00808 * 9 7 5 13 13 C 1.40902 * 119.69351 * 359.73870 * 4 3 2 14 14 C 1.36327 * 119.83482 * 359.97438 * 13 4 3 15 15 C 1.39553 * 119.91946 * 179.73620 * 2 1 3 16 16 N 1.38859 * 119.83883 * 0.02562 * 15 2 1 17 17 C 1.46500 * 119.99988 * 179.72322 * 16 15 2 18 18 C 1.50701 * 109.47333 * 180.02562 * 17 16 15 19 19 N 1.34293 * 126.06566 * 269.96063 * 18 17 16 20 20 C 1.30674 * 109.28927 * 180.02562 * 19 18 17 21 21 N 1.34699 * 108.57005 * 359.48986 * 20 19 18 22 22 C 1.34277 * 126.06487 * 89.99966 * 18 17 16 23 23 C 1.50661 * 127.32586 * 1.28248 * 22 18 17 24 24 N 1.47061 * 109.03518 * 206.72402 * 23 22 18 25 25 C 1.46389 * 111.34005 * 270.81488 * 24 23 22 26 26 C 1.52515 * 111.20284 * 62.33696 * 25 24 23 27 27 C 1.46536 * 127.29964 * 181.67029 * 21 20 19 28 28 H 1.09002 * 109.47241 * 270.26363 * 1 2 3 29 29 H 1.09000 * 109.47005 * 30.26005 * 1 2 3 30 30 H 1.08996 * 109.47203 * 150.26555 * 1 2 3 31 31 H 1.08000 * 120.08190 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99463 * 179.97438 * 8 7 5 33 33 H 1.07996 * 120.08218 * 179.97438 * 13 4 3 34 34 H 1.07996 * 119.92056 * 179.97438 * 14 13 4 35 35 H 0.97003 * 120.00129 * 359.72944 * 16 15 2 36 36 H 1.09003 * 109.46700 * 60.00537 * 17 16 15 37 37 H 1.09001 * 109.47051 * 300.00648 * 17 16 15 38 38 H 1.08003 * 125.71587 * 179.50121 * 20 19 18 39 39 H 1.09003 * 109.54291 * 326.58759 * 23 22 18 40 40 H 1.09000 * 109.54236 * 86.85261 * 23 22 18 41 41 H 1.00902 * 110.99993 * 146.62152 * 24 23 22 42 42 H 1.09002 * 109.13262 * 182.77204 * 25 24 23 43 43 H 1.08994 * 109.13748 * 301.89268 * 25 24 23 44 44 H 1.08993 * 109.41615 * 153.91534 * 26 25 24 45 45 H 1.09004 * 109.40862 * 273.70661 * 26 25 24 46 46 H 1.09002 * 109.53488 * 345.97654 * 27 21 20 47 47 H 1.08998 * 109.53530 * 106.21690 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 -0.0054 5 6 4.3067 2.3990 -0.0114 6 1 5.3117 2.4362 -0.4051 7 6 3.7095 3.5591 0.4924 8 7 2.6642 3.4701 1.2754 9 14 4.4035 5.2355 0.0480 10 1 5.5778 5.0642 -0.8449 11 1 3.3634 6.0327 -0.6503 12 1 4.8212 5.9422 1.2854 13 6 4.2919 -0.0454 -0.0051 14 6 3.5988 -1.2193 0.0009 15 6 2.2030 -1.2095 0.0056 16 7 1.5037 -2.4091 0.0106 17 6 2.2308 -3.6810 0.0103 18 6 1.2467 -4.8223 0.0156 19 7 0.7347 -5.4197 1.1039 20 6 -0.0833 -6.3680 0.7312 21 7 -0.1245 -6.3945 -0.6149 22 6 0.7268 -5.4228 -1.0670 23 6 1.0233 -5.1169 -2.5122 24 7 -0.1392 -5.4934 -3.3304 25 6 -0.0524 -6.8871 -3.7697 26 6 -0.0565 -7.8417 -2.5803 27 6 -0.9349 -7.2742 -1.4614 28 1 -0.3634 0.0047 1.0277 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3633 -0.8923 -0.5097 31 1 1.6472 2.1172 -0.0004 32 1 2.2503 4.2747 1.6250 33 1 5.3718 -0.0544 -0.0096 34 1 4.1309 -2.1590 0.0007 35 1 0.5336 -2.4051 0.0141 36 1 2.8605 -3.7396 0.8981 37 1 2.8539 -3.7430 -0.8819 38 1 -0.6343 -7.0211 1.3917 39 1 1.2195 -4.0507 -2.6263 40 1 1.8955 -5.6860 -2.8339 41 1 -0.2434 -4.8718 -4.1184 42 1 -0.9038 -7.1130 -4.4118 43 1 0.8681 -7.0265 -4.3364 44 1 -0.4489 -8.8091 -2.8934 45 1 0.9620 -7.9667 -2.2126 46 1 -1.3340 -8.0917 -0.8608 47 1 -1.7565 -6.7055 -1.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169243602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:20 Heat of formation + Delta-G solvation = 71.469768 kcal Electronic energy + Delta-G solvation = -27179.703913 eV Core-core repulsion = 23554.980106 eV Total energy + Delta-G solvation = -3624.723807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23229 -39.97054 -38.40534 -36.89261 -35.35141 -34.38187 -33.34249 -32.50374 -31.35861 -29.98080 -27.63741 -27.50821 -27.09198 -25.73792 -25.02606 -22.44989 -21.72662 -21.64418 -21.33090 -20.46140 -18.83480 -18.07270 -17.57942 -17.20475 -17.00997 -16.78385 -16.29904 -15.75477 -15.48530 -15.34918 -14.85285 -14.82225 -14.57143 -14.56144 -14.39963 -13.91323 -13.75263 -13.66123 -13.52305 -13.37345 -13.09291 -12.97123 -12.81105 -12.65392 -12.57960 -12.35730 -12.14914 -12.09980 -12.03860 -11.44323 -11.14114 -11.04642 -10.81774 -10.41125 -10.25650 -9.60122 -9.23616 -9.16065 -8.51375 -8.07173 -5.96346 1.06756 1.11943 1.22571 1.40988 1.55515 1.60595 1.96713 2.01844 2.29599 2.86111 3.09137 3.20226 3.61702 3.74821 3.78371 3.86211 3.97921 4.06002 4.22491 4.25795 4.38775 4.40507 4.43641 4.48860 4.55978 4.61610 4.67358 4.72072 4.83185 4.89359 4.93833 4.95344 5.07135 5.09659 5.13691 5.24619 5.39578 5.42832 5.51620 5.72131 5.80895 5.87052 5.90456 5.98237 6.26396 6.35033 6.40333 6.48342 6.73561 6.91525 7.12891 7.15013 7.18165 7.35171 8.52220 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025424 B = 0.002459 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.061025 B =11384.056636 C =11604.044668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.151 4.151 3 C -0.138 4.138 4 C 0.036 3.964 5 C -0.504 4.504 6 H 0.066 0.934 7 C 0.031 3.969 8 N -0.842 5.842 9 Si 0.976 3.024 10 H -0.261 1.261 11 H -0.266 1.266 12 H -0.270 1.270 13 C -0.200 4.200 14 C -0.166 4.166 15 C 0.118 3.882 16 N -0.741 5.741 17 C 0.229 3.771 18 C -0.040 4.040 19 N -0.528 5.528 20 C 0.178 3.822 21 N -0.440 5.440 22 C 0.016 3.984 23 C 0.134 3.866 24 N -0.696 5.696 25 C 0.051 3.949 26 C -0.132 4.132 27 C 0.112 3.888 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.281 0.719 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.390 0.610 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.362 0.638 42 H 0.098 0.902 43 H 0.038 0.962 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.117 0.883 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 -23.749 -10.499 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 C -0.158 4.158 4 C 0.033 3.967 5 C -0.536 4.536 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.470 5.470 9 Si 0.798 3.202 10 H -0.185 1.185 11 H -0.191 1.191 12 H -0.195 1.195 13 C -0.221 4.221 14 C -0.189 4.189 15 C 0.018 3.982 16 N -0.377 5.377 17 C 0.104 3.896 18 C -0.169 4.169 19 N -0.247 5.247 20 C -0.105 4.105 21 N -0.122 5.122 22 C -0.103 4.103 23 C 0.003 3.997 24 N -0.329 5.329 25 C -0.078 4.078 26 C -0.170 4.170 27 C -0.009 4.009 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.225 0.775 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.182 0.818 42 H 0.116 0.884 43 H 0.056 0.944 44 H 0.135 0.865 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.791 -23.816 -9.120 27.691 hybrid contribution 0.740 0.937 -1.027 1.574 sum -10.051 -22.879 -10.146 26.971 Atomic orbital electron populations 1.20414 0.91368 1.01456 1.00851 1.19219 0.95826 0.91959 1.08481 1.20765 0.94278 0.96014 1.04753 1.17804 0.92644 0.92952 0.93298 1.19578 1.01460 0.93872 1.38683 0.91595 1.26611 0.94790 1.04458 0.92220 1.69945 1.20833 1.31768 1.24473 0.85259 0.79148 0.76898 0.78909 1.18468 1.19072 1.19482 1.20716 0.97830 0.92648 1.10873 1.20069 0.92258 0.97178 1.09385 1.17275 0.90785 0.85410 1.04732 1.44001 1.06910 1.01155 1.85603 1.19024 0.91167 0.79549 0.99880 1.20199 1.05540 1.02041 0.89073 1.70227 1.13150 1.09870 1.31418 1.25488 1.01673 1.00621 0.82688 1.45562 1.32269 1.27134 1.07227 1.21020 0.98015 0.94762 0.96544 1.20316 0.92110 1.01233 0.86049 1.60001 1.41025 1.05040 1.26848 1.21978 1.02061 0.87208 0.96529 1.21989 0.99857 1.00325 0.94855 1.22091 0.93540 0.93112 0.92172 0.92898 0.92472 0.91623 0.88116 0.90878 0.88837 0.87072 0.77548 0.94327 0.91794 0.74602 0.89702 0.92009 0.81808 0.88356 0.94402 0.86451 0.92917 0.86500 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.31 9.55 71.23 0.68 -2.63 16 2 C -0.15 -7.30 5.86 -19.99 -0.12 -7.42 16 3 C -0.14 -7.68 8.27 22.48 0.19 -7.50 16 4 C 0.04 2.07 5.57 -21.27 -0.12 1.95 16 5 C -0.50 -29.28 9.03 23.38 0.21 -29.07 16 6 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 7 C 0.03 1.67 5.13 85.22 0.44 2.11 16 8 N -0.84 -47.38 10.96 21.82 0.24 -47.14 16 9 Si 0.98 41.34 29.60 68.60 2.03 43.37 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 13 C -0.20 -10.58 9.74 22.48 0.22 -10.36 16 14 C -0.17 -7.84 9.23 22.15 0.20 -7.64 16 15 C 0.12 5.34 6.65 38.67 0.26 5.60 16 16 N -0.74 -27.91 5.59 -342.70 -1.92 -29.83 16 17 C 0.23 7.69 5.16 85.63 0.44 8.13 16 18 C -0.04 -1.20 6.46 41.28 0.27 -0.94 16 19 N -0.53 -16.26 11.26 -188.62 -2.12 -18.38 16 20 C 0.18 3.81 12.59 180.32 2.27 6.08 16 21 N -0.44 -8.22 2.92 -514.76 -1.50 -9.72 16 22 C 0.02 0.37 6.41 40.86 0.26 0.63 16 23 C 0.13 2.51 5.95 85.51 0.51 3.02 16 24 N -0.70 -9.32 5.69 -519.70 -2.96 -12.28 16 25 C 0.05 0.43 6.13 86.24 0.53 0.96 16 26 C -0.13 -1.01 5.63 30.48 0.17 -0.84 16 27 C 0.11 1.10 6.26 86.42 0.54 1.64 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.06 2.24 6.53 -2.39 -0.02 2.22 16 31 H 0.10 5.87 6.16 -2.91 -0.02 5.86 16 32 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 33 H 0.09 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.11 4.62 6.68 -2.91 -0.02 4.60 16 35 H 0.39 14.19 6.42 -92.71 -0.59 13.59 16 36 H 0.04 1.44 7.93 -2.39 -0.02 1.42 16 37 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 38 H 0.24 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.08 1.84 8.03 -2.39 -0.02 1.82 16 40 H 0.06 1.08 7.72 -2.39 -0.02 1.06 16 41 H 0.36 4.01 8.90 -89.69 -0.80 3.21 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.04 0.32 8.01 -2.39 -0.02 0.31 16 44 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.05 0.63 7.96 -2.39 -0.02 0.61 16 46 H 0.12 0.48 8.12 -2.39 -0.02 0.46 16 47 H 0.09 1.02 7.55 -2.39 -0.02 1.01 16 Total: -1.00 -73.15 373.53 0.33 -72.82 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.39 Total: 37.41 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 6.95 Total: -36.26 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -8.26 Total: -117.35 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.15 0.33 -72.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169243602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.292 kcal (2) G-P(sol) polarization free energy of solvation -73.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds