Wall clock time and date at job start Tue Mar 31 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35964 * 116.99808 * 2 1 4 4 C 1.39409 * 119.82662 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.57654 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.19733 * 0.02562 * 5 4 3 7 7 N 1.38854 * 120.17924 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00066 * 5.48996 * 7 6 5 9 9 C 1.53001 * 109.46885 * 55.48217 * 8 7 6 10 10 C 1.52998 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47141 * 0.02562 * 10 9 8 12 12 C 1.47206 * 109.47223 * 179.97438 * 11 10 9 13 13 N 9.43241 * 109.49453 * 183.56637 * 3 1 2 14 14 C 1.52997 * 109.47530 * 59.99688 * 11 10 9 15 15 C 1.52995 * 109.47291 * 295.48297 * 8 7 6 16 16 C 1.53006 * 109.46834 * 299.99529 * 11 10 9 17 17 C 1.52998 * 109.46872 * 60.00307 * 16 11 10 18 18 C 1.41534 * 119.64034 * 0.27454 * 6 5 4 19 19 C 1.41029 * 120.28126 * 179.72418 * 18 6 5 20 20 H 1.07998 * 119.99711 * 34.97069 * 19 18 6 21 21 C 1.39897 * 120.00528 * 214.97052 * 19 18 6 22 22 N 1.30898 * 119.99742 * 355.07616 * 21 19 18 23 23 Si 1.86793 * 120.00223 * 175.07493 * 21 19 18 24 24 H 1.48501 * 109.47455 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47414 * 120.00318 * 23 21 19 26 26 H 1.48510 * 109.47262 * 239.99768 * 23 21 19 27 27 C 1.37849 * 119.81974 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47015 * 59.99856 * 1 2 3 29 29 H 1.08990 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46704 * 300.00380 * 1 2 3 31 31 H 1.08008 * 119.71465 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.89939 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00241 * 185.48552 * 7 6 5 34 34 H 1.08995 * 109.47165 * 60.00367 * 9 8 7 35 35 H 1.09002 * 109.47343 * 300.00190 * 9 8 7 36 36 H 1.08997 * 109.47441 * 240.00477 * 10 9 8 37 37 H 1.08999 * 109.47234 * 119.99533 * 10 9 8 38 38 H 1.08995 * 109.47013 * 59.99796 * 14 11 10 39 39 H 1.08998 * 109.47397 * 180.02562 * 14 11 10 40 40 H 1.09005 * 109.47127 * 300.00097 * 15 8 7 41 41 H 1.09002 * 109.47289 * 59.99586 * 15 8 7 42 42 H 1.09005 * 109.46481 * 179.97438 * 16 11 10 43 43 H 1.08992 * 109.47205 * 299.99918 * 16 11 10 44 44 H 1.08998 * 109.47246 * 239.99540 * 17 16 11 45 45 H 1.09005 * 109.47212 * 119.99616 * 17 16 11 46 46 H 0.97001 * 119.99935 * 180.02562 * 22 21 19 47 47 H 1.08004 * 120.10647 * 0.04627 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2834 2.3783 -0.0005 5 6 1.8941 3.6169 0.0000 6 6 3.2780 3.7124 0.0005 7 7 3.8917 4.9580 0.0016 8 6 3.0825 6.1732 0.1235 9 6 2.2246 6.0899 1.3877 10 6 1.3800 7.3592 1.5154 11 6 1.6744 8.2885 0.3360 12 6 0.8614 9.5095 0.4586 13 7 0.2337 10.4516 0.5531 14 6 1.3295 7.5760 -0.9732 15 6 2.1749 6.3066 -1.1009 16 6 3.1584 8.6610 0.3384 17 6 4.0030 7.3916 0.2107 18 6 4.0610 2.5334 -0.0054 19 6 5.4689 2.6148 -0.0108 20 1 5.9659 3.4099 0.5252 21 6 6.2219 1.6658 -0.7104 22 7 5.6266 0.6482 -1.2792 23 14 8.0766 1.8507 -0.8327 24 1 8.5007 3.0768 -0.1102 25 1 8.7335 0.6654 -0.2253 26 1 8.4704 1.9571 -2.2607 27 6 3.4230 1.2793 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2053 2.3131 -0.0014 32 1 1.2925 4.5138 0.0000 33 1 4.8561 5.0235 -0.0783 34 1 2.8712 5.9949 2.2599 35 1 1.5688 5.2214 1.3252 36 1 1.6255 7.8667 2.4482 37 1 0.3228 7.0940 1.5132 38 1 0.2724 7.3106 -0.9749 39 1 1.5397 8.2378 -1.8134 40 1 2.7861 6.3659 -2.0015 41 1 1.5191 5.4381 -1.1634 42 1 3.3682 9.3226 -0.5021 43 1 3.4041 9.1686 1.2711 44 1 4.6499 7.2964 1.0827 45 1 4.6139 7.4508 -0.6902 46 1 6.1487 -0.0101 -1.7640 47 1 4.0101 0.3728 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169750301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:50 Heat of formation + Delta-G solvation = 17.695153 kcal Electronic energy + Delta-G solvation = -28452.711369 eV Core-core repulsion = 24793.362968 eV Total energy + Delta-G solvation = -3659.348401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12476 -38.62297 -37.14329 -36.15271 -34.04666 -33.11674 -31.21678 -30.92740 -30.31742 -29.26548 -27.67471 -25.87076 -25.01766 -23.02596 -22.74248 -22.51653 -20.78895 -19.94605 -18.70237 -17.64612 -16.76305 -16.32998 -15.94154 -15.86487 -15.38690 -14.97729 -14.71614 -14.63889 -14.17562 -13.53778 -13.48691 -13.16836 -13.07137 -13.05589 -12.73145 -12.62195 -12.14910 -12.11576 -12.05445 -11.95457 -11.83850 -11.58743 -11.56015 -11.37851 -11.19846 -11.11707 -10.99865 -10.70278 -10.58143 -10.48114 -10.34957 -9.98713 -9.82763 -9.65214 -9.18234 -9.08330 -8.36061 -7.25915 -6.56155 -5.95093 -4.23811 2.63585 2.64010 2.81341 3.11674 3.14440 3.15654 3.23982 3.69237 4.00967 4.29099 4.43513 4.44852 4.48361 4.76822 4.85620 5.16118 5.21143 5.23997 5.29919 5.31817 5.33444 5.35182 5.39896 5.65506 5.74288 5.81644 5.83401 5.90665 5.94632 5.97321 5.98271 6.12184 6.15073 6.16079 6.31370 6.33509 6.38234 6.62145 6.62646 6.88181 7.02738 7.25675 7.42511 7.49196 7.58536 7.62056 7.99196 8.06820 8.30615 8.64435 8.83821 8.90243 9.02035 9.14238 10.38316 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004349 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.509758 B = 6436.858589 C = 8420.694068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.083 3.917 4 C -0.267 4.267 5 C -0.171 4.171 6 C 0.110 3.890 7 N -0.739 5.739 8 C 0.196 3.804 9 C -0.140 4.140 10 C -0.101 4.101 11 C 0.038 3.962 12 C 0.222 3.778 13 N -0.446 5.446 14 C -0.101 4.101 15 C -0.140 4.140 16 C -0.098 4.098 17 C -0.116 4.116 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.808 5.808 23 Si 0.909 3.091 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.277 1.277 27 C -0.155 4.155 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.275 0.725 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 8.958 1.749 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.039 3.961 4 C -0.287 4.287 5 C -0.194 4.194 6 C 0.011 3.989 7 N -0.372 5.372 8 C 0.108 3.892 9 C -0.179 4.179 10 C -0.140 4.140 11 C 0.034 3.966 12 C -0.096 4.096 13 N -0.120 5.120 14 C -0.141 4.141 15 C -0.179 4.179 16 C -0.137 4.137 17 C -0.154 4.154 18 C 0.083 3.917 19 C -0.496 4.496 20 H 0.092 0.908 21 C -0.143 4.143 22 N -0.436 5.436 23 Si 0.734 3.266 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.176 4.176 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.256 10.092 1.771 11.515 hybrid contribution 1.061 -0.128 -0.316 1.114 sum -4.195 9.963 1.454 10.908 Atomic orbital electron populations 1.22693 0.81332 1.01552 1.00174 1.86014 1.18945 1.29204 1.90414 1.18928 0.92592 0.82408 1.02185 1.20307 0.96976 0.92386 1.19054 1.20294 0.92683 0.96053 1.10321 1.17883 0.90979 0.85185 1.04880 1.43991 1.07720 1.01021 1.84513 1.19730 0.90814 0.85405 0.93278 1.22247 0.99531 0.97537 0.98575 1.21592 1.01080 0.95588 0.95760 1.18318 0.93044 0.86183 0.99014 1.29274 0.93427 0.94204 0.92682 1.81184 1.10076 1.11739 1.09005 1.21603 1.00901 0.97306 0.94260 1.22278 0.99214 0.97267 0.99106 1.21512 0.91038 0.98198 1.02935 1.21678 0.97683 0.92885 1.03126 1.17000 0.92877 0.88421 0.93355 1.19124 0.90850 1.10717 1.28866 0.90839 1.25770 1.00299 0.94117 0.94136 1.69824 1.37023 1.09646 1.27081 0.86259 0.82772 0.79057 0.78483 1.18800 1.20201 1.20237 1.20668 0.89115 0.99347 1.08497 0.93985 0.90235 0.94021 0.89010 0.86900 0.76778 0.91188 0.88667 0.91271 0.91163 0.91162 0.91277 0.91187 0.89082 0.90988 0.90975 0.90799 0.90843 0.91389 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.33 -7.27 10.49 -19.63 -0.21 -7.48 16 3 C 0.08 1.96 6.67 -39.29 -0.26 1.69 16 4 C -0.27 -5.61 9.03 -39.20 -0.35 -5.96 16 5 C -0.17 -3.37 6.83 -39.46 -0.27 -3.64 16 6 C 0.11 2.31 6.27 -83.25 -0.52 1.78 16 7 N -0.74 -12.71 5.15 -45.57 -0.23 -12.94 16 8 C 0.20 2.56 0.80 -131.84 -0.11 2.46 16 9 C -0.14 -1.76 4.74 -26.73 -0.13 -1.89 16 10 C -0.10 -1.02 4.94 -26.73 -0.13 -1.16 16 11 C 0.04 0.38 0.69 -157.29 -0.11 0.27 16 12 C 0.22 2.57 13.86 -20.76 -0.29 2.28 16 13 N -0.45 -6.20 18.54 42.15 0.78 -5.42 16 14 C -0.10 -1.03 4.95 -26.71 -0.13 -1.16 16 15 C -0.14 -1.76 4.87 -26.71 -0.13 -1.89 16 16 C -0.10 -0.88 4.95 -26.73 -0.13 -1.01 16 17 C -0.12 -1.22 5.10 -26.76 -0.14 -1.35 16 18 C 0.09 2.17 5.56 -106.65 -0.59 1.57 16 19 C -0.46 -11.34 8.23 -37.90 -0.31 -11.65 16 20 H 0.07 1.70 7.08 -52.49 -0.37 1.32 16 21 C 0.07 1.74 5.42 -17.33 -0.09 1.64 16 22 N -0.81 -20.77 10.62 55.55 0.59 -20.18 16 23 Si 0.91 18.30 29.56 -169.99 -5.03 13.27 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.15 -4.00 8.59 -38.79 -0.33 -4.33 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.09 1.71 6.26 -52.48 -0.33 1.38 16 32 H 0.11 1.90 3.30 -52.49 -0.17 1.73 16 33 H 0.40 6.94 6.93 -40.82 -0.28 6.66 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.37 4.58 -51.93 -0.24 1.13 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.31 4.80 -51.93 -0.25 1.06 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 47 H 0.14 3.75 6.16 -52.48 -0.32 3.43 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -27.94 359.25 -8.27 -36.21 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.55 Total: 11.86 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.04 Total: -20.74 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 1.14 Total: -38.54 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.21 Total: -7.48 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.94 -8.27 -36.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169750301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.902 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds