Wall clock time and date at job start Tue Mar 31 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35964 * 116.99808 * 2 1 4 4 C 1.39409 * 119.82662 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.57654 * 179.97438 * 4 3 2 6 6 C 1.38716 * 120.19733 * 0.02562 * 5 4 3 7 7 N 1.38854 * 120.17924 * 180.02562 * 6 5 4 8 8 C 1.46506 * 120.00066 * 5.48996 * 7 6 5 9 9 C 1.53001 * 109.46885 * 55.48217 * 8 7 6 10 10 C 1.52998 * 109.46982 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47141 * 0.02562 * 10 9 8 12 12 C 1.47206 * 109.47223 * 179.97438 * 11 10 9 13 13 N 9.43241 * 109.49453 * 183.56637 * 3 1 2 14 14 C 1.52997 * 109.47530 * 59.99688 * 11 10 9 15 15 C 1.52995 * 109.47291 * 295.48297 * 8 7 6 16 16 C 1.53006 * 109.46834 * 299.99529 * 11 10 9 17 17 C 1.52998 * 109.46872 * 60.00307 * 16 11 10 18 18 C 1.41534 * 119.64034 * 0.27454 * 6 5 4 19 19 C 1.41029 * 120.28126 * 179.72418 * 18 6 5 20 20 H 1.07998 * 119.99711 * 34.97069 * 19 18 6 21 21 C 1.39897 * 120.00528 * 214.97052 * 19 18 6 22 22 N 1.30898 * 119.99742 * 355.07616 * 21 19 18 23 23 Si 1.86793 * 120.00223 * 175.07493 * 21 19 18 24 24 H 1.48501 * 109.47455 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47414 * 120.00318 * 23 21 19 26 26 H 1.48510 * 109.47262 * 239.99768 * 23 21 19 27 27 C 1.37849 * 119.81974 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47015 * 59.99856 * 1 2 3 29 29 H 1.08990 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46704 * 300.00380 * 1 2 3 31 31 H 1.08008 * 119.71465 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.89939 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00241 * 185.48552 * 7 6 5 34 34 H 1.08995 * 109.47165 * 60.00367 * 9 8 7 35 35 H 1.09002 * 109.47343 * 300.00190 * 9 8 7 36 36 H 1.08997 * 109.47441 * 240.00477 * 10 9 8 37 37 H 1.08999 * 109.47234 * 119.99533 * 10 9 8 38 38 H 1.08995 * 109.47013 * 59.99796 * 14 11 10 39 39 H 1.08998 * 109.47397 * 180.02562 * 14 11 10 40 40 H 1.09005 * 109.47127 * 300.00097 * 15 8 7 41 41 H 1.09002 * 109.47289 * 59.99586 * 15 8 7 42 42 H 1.09005 * 109.46481 * 179.97438 * 16 11 10 43 43 H 1.08992 * 109.47205 * 299.99918 * 16 11 10 44 44 H 1.08998 * 109.47246 * 239.99540 * 17 16 11 45 45 H 1.09005 * 109.47212 * 119.99616 * 17 16 11 46 46 H 0.97001 * 119.99935 * 180.02562 * 22 21 19 47 47 H 1.08004 * 120.10647 * 0.04627 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2834 2.3783 -0.0005 5 6 1.8941 3.6169 0.0000 6 6 3.2780 3.7124 0.0005 7 7 3.8917 4.9580 0.0016 8 6 3.0825 6.1732 0.1235 9 6 2.2246 6.0899 1.3877 10 6 1.3800 7.3592 1.5154 11 6 1.6744 8.2885 0.3360 12 6 0.8614 9.5095 0.4586 13 7 0.2337 10.4516 0.5531 14 6 1.3295 7.5760 -0.9732 15 6 2.1749 6.3066 -1.1009 16 6 3.1584 8.6610 0.3384 17 6 4.0030 7.3916 0.2107 18 6 4.0610 2.5334 -0.0054 19 6 5.4689 2.6148 -0.0108 20 1 5.9659 3.4099 0.5252 21 6 6.2219 1.6658 -0.7104 22 7 5.6266 0.6482 -1.2792 23 14 8.0766 1.8507 -0.8327 24 1 8.5007 3.0768 -0.1102 25 1 8.7335 0.6654 -0.2253 26 1 8.4704 1.9571 -2.2607 27 6 3.4230 1.2793 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2053 2.3131 -0.0014 32 1 1.2925 4.5138 0.0000 33 1 4.8561 5.0235 -0.0783 34 1 2.8712 5.9949 2.2599 35 1 1.5688 5.2214 1.3252 36 1 1.6255 7.8667 2.4482 37 1 0.3228 7.0940 1.5132 38 1 0.2724 7.3106 -0.9749 39 1 1.5397 8.2378 -1.8134 40 1 2.7861 6.3659 -2.0015 41 1 1.5191 5.4381 -1.1634 42 1 3.3682 9.3226 -0.5021 43 1 3.4041 9.1686 1.2711 44 1 4.6499 7.2964 1.0827 45 1 4.6139 7.4508 -0.6902 46 1 6.1487 -0.0101 -1.7640 47 1 4.0101 0.3728 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169750301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:49 Heat of formation + Delta-G solvation = 3.184990 kcal Electronic energy + Delta-G solvation = -28453.340577 eV Core-core repulsion = 24793.362968 eV Total energy + Delta-G solvation = -3659.977608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.11895 -40.22943 -38.53402 -37.34474 -35.53119 -34.68915 -32.19546 -31.84732 -31.72302 -30.75803 -29.15006 -27.29921 -26.76504 -24.05553 -23.66554 -23.56331 -22.36460 -21.52537 -19.78994 -19.18121 -18.00196 -17.75084 -17.40670 -16.78929 -16.65467 -16.43601 -16.20046 -16.13240 -15.40159 -14.77172 -14.55061 -14.45004 -14.28294 -14.13058 -13.98480 -13.79908 -13.45342 -13.25965 -13.21781 -13.01565 -12.90903 -12.88136 -12.83785 -12.65066 -12.57867 -12.50524 -12.40973 -12.18062 -11.80936 -11.79839 -11.59870 -11.30984 -11.08907 -10.97048 -10.80522 -10.40825 -9.84495 -9.06150 -8.35823 -7.59172 -6.06633 1.09945 1.43311 1.45588 1.55827 1.59488 1.73996 1.74153 2.31630 2.75996 2.90262 3.02191 3.12816 3.56294 3.60814 3.86341 3.95775 4.26416 4.31306 4.38160 4.42884 4.44914 4.46861 4.47635 4.48655 4.50672 4.54424 4.60095 4.65500 4.80411 4.97936 5.09582 5.15667 5.16960 5.20969 5.24395 5.30020 5.33263 5.37702 5.38812 5.46004 5.61038 5.61390 5.73834 5.87761 5.97519 6.19191 6.32492 6.51421 6.54356 6.96607 7.12607 7.16512 7.39794 7.50382 8.60171 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004349 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.509758 B = 6436.858589 C = 8420.694068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.063 3.937 4 C -0.259 4.259 5 C -0.169 4.169 6 C 0.118 3.882 7 N -0.736 5.736 8 C 0.189 3.811 9 C -0.135 4.135 10 C -0.096 4.096 11 C 0.046 3.954 12 C 0.247 3.753 13 N -0.485 5.485 14 C -0.097 4.097 15 C -0.135 4.135 16 C -0.094 4.094 17 C -0.110 4.110 18 C 0.053 3.947 19 C -0.482 4.482 20 H 0.080 0.920 21 C 0.025 3.975 22 N -0.850 5.850 23 Si 0.979 3.021 24 H -0.251 1.251 25 H -0.278 1.278 26 H -0.275 1.275 27 C -0.188 4.188 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.393 0.607 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.275 0.725 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 11.722 1.998 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.019 3.981 4 C -0.279 4.279 5 C -0.192 4.192 6 C 0.017 3.983 7 N -0.368 5.368 8 C 0.102 3.898 9 C -0.174 4.174 10 C -0.135 4.135 11 C 0.042 3.958 12 C -0.070 4.070 13 N -0.160 5.160 14 C -0.136 4.136 15 C -0.174 4.174 16 C -0.133 4.133 17 C -0.148 4.148 18 C 0.048 3.952 19 C -0.514 4.514 20 H 0.098 0.902 21 C -0.186 4.186 22 N -0.479 5.479 23 Si 0.802 3.198 24 H -0.174 1.174 25 H -0.204 1.204 26 H -0.201 1.201 27 C -0.210 4.210 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.164 0.836 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.046 12.896 2.032 14.387 hybrid contribution 1.147 -0.992 -0.367 1.560 sum -4.899 11.904 1.665 12.980 Atomic orbital electron populations 1.23035 0.78324 1.03975 1.01136 1.85960 1.22137 1.28883 1.90463 1.19024 0.92277 0.83849 1.02967 1.20672 0.98321 0.91869 1.17083 1.20695 0.92519 0.97001 1.08987 1.17946 0.91437 0.85738 1.03166 1.44162 1.08001 1.01099 1.83554 1.20055 0.91239 0.84658 0.93887 1.22129 0.99201 0.98122 0.97906 1.21555 1.01000 0.94398 0.96572 1.18321 0.93404 0.85385 0.98690 1.29341 0.92496 0.93730 0.91456 1.81230 1.11367 1.13059 1.10303 1.21566 1.00799 0.96237 0.94970 1.22159 0.98884 0.97821 0.98494 1.21528 0.89766 0.97507 1.04461 1.21636 0.97445 0.92158 1.03563 1.17331 0.93665 0.89422 0.94784 1.19378 0.91331 1.11292 1.29425 0.90150 1.26633 1.04755 0.93566 0.93617 1.69981 1.38649 1.10752 1.28531 0.85192 0.77098 0.79182 0.78357 1.17387 1.20413 1.20090 1.20576 0.90364 0.98840 1.11221 0.93125 0.87303 0.92698 0.86214 0.83575 0.77140 0.91747 0.90562 0.89824 0.90402 0.90398 0.89838 0.91719 0.90985 0.89551 0.89535 0.90472 0.90471 0.91484 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.05 16 2 O -0.36 -16.15 10.49 -93.15 -0.98 -17.13 16 3 C 0.06 3.08 6.67 22.46 0.15 3.23 16 4 C -0.26 -10.75 9.03 22.52 0.20 -10.55 16 5 C -0.17 -6.54 6.83 22.35 0.15 -6.39 16 6 C 0.12 5.00 6.27 38.96 0.24 5.24 16 7 N -0.74 -24.80 5.15 -298.08 -1.54 -26.33 16 8 C 0.19 4.52 0.80 3.59 0.00 4.52 16 9 C -0.14 -3.07 4.74 30.59 0.15 -2.93 16 10 C -0.10 -1.62 4.94 30.59 0.15 -1.46 16 11 C 0.05 0.73 0.69 -53.98 -0.04 0.69 16 12 C 0.25 4.87 13.86 89.44 1.24 6.11 16 13 N -0.48 -12.19 18.54 20.01 0.37 -11.82 16 14 C -0.10 -1.63 4.95 30.61 0.15 -1.47 16 15 C -0.13 -3.07 4.87 30.61 0.15 -2.92 16 16 C -0.09 -1.32 4.95 30.60 0.15 -1.17 16 17 C -0.11 -1.99 5.10 30.58 0.16 -1.84 16 18 C 0.05 2.69 5.56 -21.18 -0.12 2.58 16 19 C -0.48 -24.47 8.23 23.36 0.19 -24.27 16 20 H 0.08 3.79 7.08 -2.91 -0.02 3.77 16 21 C 0.02 1.24 5.42 85.23 0.46 1.71 16 22 N -0.85 -46.34 10.62 21.82 0.23 -46.10 16 23 Si 0.98 38.54 29.56 68.60 2.03 40.57 16 24 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 25 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 26 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 27 C -0.19 -10.31 8.59 22.78 0.20 -10.11 16 28 H 0.05 1.47 7.65 -2.39 -0.02 1.45 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.05 1.54 7.65 -2.39 -0.02 1.52 16 31 H 0.12 4.20 6.26 -2.91 -0.02 4.18 16 32 H 0.15 4.62 3.30 -2.91 -0.01 4.61 16 33 H 0.39 13.63 6.93 -92.71 -0.64 12.98 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.03 4.58 -2.39 -0.01 2.02 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.07 1.92 4.80 -2.39 -0.01 1.91 16 42 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.27 13.93 8.30 -92.71 -0.77 13.16 16 47 H 0.10 6.06 6.16 -2.91 -0.02 6.04 16 Total: -1.00 -64.69 359.25 5.19 -59.50 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.37 Total: 38.31 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.70 Total: -36.99 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -0.93 Total: -84.26 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.98 Total: -17.13 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -64.69 5.19 -59.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169750301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.682 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds