Wall clock time and date at job start Tue Mar 31 2020 14:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35668 * 116.99839 * 2 1 4 4 C 1.38041 * 120.21450 * 0.23750 * 3 2 1 5 5 C 1.39219 * 119.97748 * 180.27941 * 4 3 2 6 6 N 1.38918 * 119.79437 * 179.75873 * 5 4 3 7 7 C 1.46508 * 120.00189 * 173.23848 * 6 5 4 8 8 C 1.52991 * 109.47313 * 185.54297 * 7 6 5 9 9 C 1.53005 * 109.46946 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47169 * 359.97438 * 9 8 7 11 11 C 1.47191 * 109.47116 * 179.97438 * 10 9 8 12 12 N 9.69839 * 133.08046 * 185.23457 * 3 1 2 13 13 C 1.53007 * 109.47005 * 60.00033 * 10 9 8 14 14 C 1.52998 * 109.46596 * 65.53859 * 7 6 5 15 15 C 1.52998 * 109.47128 * 300.00134 * 10 9 8 16 16 C 1.52999 * 109.46714 * 305.54763 * 7 6 5 17 17 C 1.39721 * 120.40648 * 359.73453 * 5 4 3 18 18 C 1.36221 * 120.42930 * 0.02562 * 17 5 4 19 19 C 1.40856 * 120.01287 * 0.02562 * 18 17 5 20 20 C 1.40968 * 120.20679 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00170 * 205.05133 * 20 19 18 22 22 C 1.39844 * 119.99437 * 25.04808 * 20 19 18 23 23 N 1.30951 * 119.99690 * 203.42576 * 22 20 19 24 24 Si 1.86799 * 120.00075 * 23.43355 * 22 20 19 25 25 H 1.48502 * 109.46967 * 269.99671 * 24 22 20 26 26 H 1.48501 * 109.47261 * 29.99703 * 24 22 20 27 27 H 1.48506 * 109.47205 * 149.99900 * 24 22 20 28 28 H 1.09005 * 109.47283 * 300.00286 * 1 2 3 29 29 H 1.09006 * 109.47218 * 59.99998 * 1 2 3 30 30 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00938 * 0.02562 * 4 3 2 32 32 H 0.96999 * 120.00186 * 353.24365 * 6 5 4 33 33 H 1.09005 * 109.47412 * 299.99896 * 8 7 6 34 34 H 1.08998 * 109.47175 * 60.00202 * 8 7 6 35 35 H 1.09003 * 109.46869 * 239.99889 * 9 8 7 36 36 H 1.09000 * 109.46972 * 120.00049 * 9 8 7 37 37 H 1.08996 * 109.46918 * 180.02562 * 13 10 9 38 38 H 1.09000 * 109.47230 * 59.99879 * 13 10 9 39 39 H 1.08991 * 109.47613 * 300.00428 * 14 7 6 40 40 H 1.09005 * 109.46968 * 60.00815 * 14 7 6 41 41 H 1.08996 * 109.47274 * 180.02562 * 15 10 9 42 42 H 1.09003 * 109.47058 * 300.00187 * 15 10 9 43 43 H 1.08998 * 109.47084 * 299.99376 * 16 7 6 44 44 H 1.09001 * 109.47598 * 59.99776 * 16 7 6 45 45 H 1.07993 * 119.78155 * 180.02562 * 17 5 4 46 46 H 1.07999 * 119.99610 * 180.02562 * 18 17 5 47 47 H 0.97003 * 120.00195 * 354.97610 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 0.0049 5 6 1.9345 3.6072 -0.0010 6 7 1.1785 4.7726 -0.0010 7 6 1.8374 6.0733 0.1422 8 6 0.7786 7.1724 0.2494 9 6 1.4668 8.5307 0.3983 10 6 2.9845 8.3370 0.3910 11 6 3.6466 9.6439 0.5337 12 7 4.1576 10.6522 0.6463 13 6 3.4100 7.6918 -0.9295 14 6 2.7216 6.3341 -1.0789 15 6 3.3885 7.4303 1.5552 16 6 2.7003 6.0713 1.4056 17 6 3.3295 3.6845 -0.0063 18 6 4.0834 2.5499 -0.0063 19 6 3.4574 1.2881 -0.0015 20 6 4.2336 0.1113 -0.0020 21 1 3.8221 -0.8068 -0.3947 22 6 5.5364 0.1328 0.5058 23 7 6.4061 -0.7651 0.1157 24 14 6.0358 1.4423 1.7409 25 1 6.5634 2.6280 1.0190 26 1 4.8535 1.8391 2.5470 27 1 7.0878 0.9007 2.6384 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2186 2.3170 0.0092 32 1 0.2143 4.7253 -0.0958 33 1 0.1638 7.1737 -0.6508 34 1 0.1487 6.9865 1.1193 35 1 1.1640 8.9902 1.3392 36 1 1.1786 9.1769 -0.4309 37 1 4.4911 7.5534 -0.9344 38 1 3.1221 8.3378 -1.7589 39 1 3.4759 5.5511 -1.1552 40 1 2.1068 6.3354 -1.9790 41 1 4.4697 7.2926 1.5504 42 1 3.0853 7.8899 2.4960 43 1 2.0705 5.8854 2.2755 44 1 3.4547 5.2883 1.3292 45 1 3.8132 4.6500 -0.0104 46 1 5.1612 2.6178 -0.0101 47 1 6.1281 -1.4878 -0.4685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169750961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:54 Heat of formation + Delta-G solvation = 19.296889 kcal Electronic energy + Delta-G solvation = -28422.536262 eV Core-core repulsion = 24763.257318 eV Total energy + Delta-G solvation = -3659.278944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29414 -38.88705 -37.18761 -36.18819 -34.68452 -33.04263 -31.38947 -31.05133 -30.78810 -29.02142 -28.35323 -26.64249 -24.23788 -23.15332 -22.87711 -22.29794 -21.26934 -20.20241 -18.77869 -18.05824 -17.35022 -16.81408 -16.19375 -16.08178 -15.38227 -14.79836 -14.71216 -14.31317 -14.16488 -14.00863 -13.58440 -13.54199 -13.20547 -13.12269 -12.95183 -12.82834 -12.68175 -12.26989 -12.24889 -12.13068 -11.97931 -11.90384 -11.76128 -11.50490 -11.33994 -11.13678 -10.66390 -10.61196 -10.58753 -10.43386 -10.39455 -9.97293 -9.87944 -9.63216 -9.20144 -9.03787 -8.49738 -7.35908 -7.20902 -6.62573 -4.08552 2.57281 2.57491 2.64545 2.79814 3.26472 3.43192 3.58455 3.60759 3.97527 4.14033 4.30286 4.31247 4.38079 4.63070 4.70226 4.97041 5.04323 5.05973 5.16161 5.17360 5.20046 5.25707 5.28660 5.47562 5.64271 5.66717 5.72056 5.73648 5.79963 5.83221 5.89602 5.96715 5.98178 6.00926 6.03154 6.19092 6.22985 6.40678 6.43452 6.58523 6.72813 6.90307 7.06036 7.36631 7.44151 7.61672 7.75251 7.85961 8.20124 8.33573 8.47450 8.64053 8.78115 9.05029 10.20376 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.004105 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.636207 B = 6820.030439 C = 8261.146338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.055 3.945 4 C -0.228 4.228 5 C 0.122 3.878 6 N -0.750 5.750 7 C 0.198 3.802 8 C -0.114 4.114 9 C -0.098 4.098 10 C 0.038 3.962 11 C 0.220 3.780 12 N -0.442 5.442 13 C -0.103 4.103 14 C -0.141 4.141 15 C -0.103 4.103 16 C -0.143 4.143 17 C -0.178 4.178 18 C -0.198 4.198 19 C 0.055 3.945 20 C -0.508 4.508 21 H 0.076 0.924 22 C 0.040 3.960 23 N -0.827 5.827 24 Si 1.072 2.928 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.293 1.293 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.386 0.614 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 13.541 0.601 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.010 3.990 4 C -0.251 4.251 5 C 0.024 3.976 6 N -0.383 5.383 7 C 0.110 3.890 8 C -0.152 4.152 9 C -0.137 4.137 10 C 0.035 3.965 11 C -0.098 4.098 12 N -0.116 5.116 13 C -0.142 4.142 14 C -0.179 4.179 15 C -0.142 4.142 16 C -0.181 4.181 17 C -0.199 4.199 18 C -0.218 4.218 19 C 0.051 3.949 20 C -0.538 4.538 21 H 0.094 0.906 22 C -0.178 4.178 23 N -0.451 5.451 24 Si 0.899 3.101 25 H -0.205 1.205 26 H -0.190 1.190 27 H -0.220 1.220 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.219 0.781 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.134 0.866 46 H 0.129 0.871 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.509 15.450 1.617 17.712 hybrid contribution -2.184 -0.936 -1.108 2.622 sum -10.693 14.514 0.509 18.035 Atomic orbital electron populations 1.22753 0.81579 1.01877 0.99932 1.86023 1.18343 1.28111 1.89742 1.18930 0.92055 0.82338 1.05647 1.20180 0.97370 0.91511 1.16024 1.16834 0.90203 0.84686 1.05838 1.43942 1.07005 1.01830 1.85567 1.19758 0.91978 0.83584 0.93681 1.21675 0.97584 0.93148 1.02782 1.21505 0.91237 0.97916 1.03052 1.18299 0.94778 0.84492 0.98959 1.29203 0.93315 0.94406 0.92840 1.81201 1.09439 1.12139 1.08830 1.21596 1.01426 0.97048 0.94154 1.22281 1.00581 0.96422 0.98662 1.21616 1.01546 0.95079 0.95984 1.22286 1.00920 0.96750 0.98181 1.20364 0.91743 0.97869 1.09915 1.20512 0.98466 0.91600 1.11185 1.17076 0.88100 0.93674 0.96013 1.20265 0.99227 0.96970 1.37355 0.90603 1.27141 0.92077 1.01150 0.97394 1.70587 1.35382 1.12074 1.27065 0.83644 0.76578 0.74072 0.75815 1.20469 1.18965 1.22040 0.94030 0.94174 0.89983 0.88275 0.78136 0.91024 0.90918 0.90876 0.90894 0.90804 0.91160 0.88791 0.91271 0.90778 0.91108 0.91151 0.88363 0.86567 0.87130 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.90 9.78 -18.70 -0.18 -7.08 16 3 C 0.06 1.29 6.71 -38.42 -0.26 1.03 16 4 C -0.23 -4.48 8.87 -39.29 -0.35 -4.83 16 5 C 0.12 2.20 6.24 -83.73 -0.52 1.67 16 6 N -0.75 -10.10 5.22 -45.89 -0.24 -10.34 16 7 C 0.20 2.17 0.80 -131.82 -0.11 2.06 16 8 C -0.11 -0.93 5.11 -26.73 -0.14 -1.06 16 9 C -0.10 -0.74 4.94 -26.73 -0.13 -0.87 16 10 C 0.04 0.34 0.69 -157.30 -0.11 0.23 16 11 C 0.22 2.41 13.86 -20.76 -0.29 2.13 16 12 N -0.44 -5.94 18.54 42.15 0.78 -5.16 16 13 C -0.10 -0.95 4.94 -26.75 -0.13 -1.08 16 14 C -0.14 -1.56 4.87 -26.76 -0.13 -1.69 16 15 C -0.10 -0.98 4.95 -26.70 -0.13 -1.11 16 16 C -0.14 -1.65 4.72 -26.70 -0.13 -1.78 16 17 C -0.18 -3.43 6.74 -39.75 -0.27 -3.70 16 18 C -0.20 -4.54 7.35 -39.32 -0.29 -4.83 16 19 C 0.06 1.40 5.20 -106.64 -0.55 0.85 16 20 C -0.51 -14.03 9.06 -37.95 -0.34 -14.37 16 21 H 0.08 2.24 7.80 -52.49 -0.41 1.83 16 22 C 0.04 1.07 5.35 -17.33 -0.09 0.98 16 23 N -0.83 -22.80 13.66 55.54 0.76 -22.04 16 24 Si 1.07 24.38 25.09 -169.99 -4.27 20.11 16 25 H -0.28 -5.87 6.33 56.52 0.36 -5.51 16 26 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 28 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.69 6.29 -52.48 -0.33 1.36 16 32 H 0.39 4.58 8.48 -40.82 -0.35 4.23 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.26 4.80 -51.93 -0.25 1.01 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.38 4.54 -51.93 -0.24 1.15 16 45 H 0.12 1.94 3.28 -52.49 -0.17 1.77 16 46 H 0.11 2.55 4.30 -52.49 -0.23 2.33 16 47 H 0.28 7.68 8.73 -40.82 -0.36 7.32 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -29.70 356.17 -7.37 -37.07 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.61 Total: 6.90 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.98 Total: -24.82 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 1.30 Total: -37.55 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.18 Total: -7.08 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.27 Total: 20.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.70 -7.37 -37.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169750961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.366 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds