Wall clock time and date at job start Tue Mar 31 2020 14:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35668 * 116.99839 * 2 1 4 4 C 1.38041 * 120.21450 * 0.23750 * 3 2 1 5 5 C 1.39219 * 119.97748 * 180.27941 * 4 3 2 6 6 N 1.38918 * 119.79437 * 179.75873 * 5 4 3 7 7 C 1.46508 * 120.00189 * 173.23848 * 6 5 4 8 8 C 1.52991 * 109.47313 * 185.54297 * 7 6 5 9 9 C 1.53005 * 109.46946 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47169 * 359.97438 * 9 8 7 11 11 C 1.47191 * 109.47116 * 179.97438 * 10 9 8 12 12 N 9.69839 * 133.08046 * 185.23457 * 3 1 2 13 13 C 1.53007 * 109.47005 * 60.00033 * 10 9 8 14 14 C 1.52998 * 109.46596 * 65.53859 * 7 6 5 15 15 C 1.52998 * 109.47128 * 300.00134 * 10 9 8 16 16 C 1.52999 * 109.46714 * 305.54763 * 7 6 5 17 17 C 1.39721 * 120.40648 * 359.73453 * 5 4 3 18 18 C 1.36221 * 120.42930 * 0.02562 * 17 5 4 19 19 C 1.40856 * 120.01287 * 0.02562 * 18 17 5 20 20 C 1.40968 * 120.20679 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00170 * 205.05133 * 20 19 18 22 22 C 1.39844 * 119.99437 * 25.04808 * 20 19 18 23 23 N 1.30951 * 119.99690 * 203.42576 * 22 20 19 24 24 Si 1.86799 * 120.00075 * 23.43355 * 22 20 19 25 25 H 1.48502 * 109.46967 * 269.99671 * 24 22 20 26 26 H 1.48501 * 109.47261 * 29.99703 * 24 22 20 27 27 H 1.48506 * 109.47205 * 149.99900 * 24 22 20 28 28 H 1.09005 * 109.47283 * 300.00286 * 1 2 3 29 29 H 1.09006 * 109.47218 * 59.99998 * 1 2 3 30 30 H 1.09000 * 109.47338 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00938 * 0.02562 * 4 3 2 32 32 H 0.96999 * 120.00186 * 353.24365 * 6 5 4 33 33 H 1.09005 * 109.47412 * 299.99896 * 8 7 6 34 34 H 1.08998 * 109.47175 * 60.00202 * 8 7 6 35 35 H 1.09003 * 109.46869 * 239.99889 * 9 8 7 36 36 H 1.09000 * 109.46972 * 120.00049 * 9 8 7 37 37 H 1.08996 * 109.46918 * 180.02562 * 13 10 9 38 38 H 1.09000 * 109.47230 * 59.99879 * 13 10 9 39 39 H 1.08991 * 109.47613 * 300.00428 * 14 7 6 40 40 H 1.09005 * 109.46968 * 60.00815 * 14 7 6 41 41 H 1.08996 * 109.47274 * 180.02562 * 15 10 9 42 42 H 1.09003 * 109.47058 * 300.00187 * 15 10 9 43 43 H 1.08998 * 109.47084 * 299.99376 * 16 7 6 44 44 H 1.09001 * 109.47598 * 59.99776 * 16 7 6 45 45 H 1.07993 * 119.78155 * 180.02562 * 17 5 4 46 46 H 1.07999 * 119.99610 * 180.02562 * 18 17 5 47 47 H 0.97003 * 120.00195 * 354.97610 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2974 2.3693 0.0049 5 6 1.9345 3.6072 -0.0010 6 7 1.1785 4.7726 -0.0010 7 6 1.8374 6.0733 0.1422 8 6 0.7786 7.1724 0.2494 9 6 1.4668 8.5307 0.3983 10 6 2.9845 8.3370 0.3910 11 6 3.6466 9.6439 0.5337 12 7 4.1576 10.6522 0.6463 13 6 3.4100 7.6918 -0.9295 14 6 2.7216 6.3341 -1.0789 15 6 3.3885 7.4303 1.5552 16 6 2.7003 6.0713 1.4056 17 6 3.3295 3.6845 -0.0063 18 6 4.0834 2.5499 -0.0063 19 6 3.4574 1.2881 -0.0015 20 6 4.2336 0.1113 -0.0020 21 1 3.8221 -0.8068 -0.3947 22 6 5.5364 0.1328 0.5058 23 7 6.4061 -0.7651 0.1157 24 14 6.0358 1.4423 1.7409 25 1 6.5634 2.6280 1.0190 26 1 4.8535 1.8391 2.5470 27 1 7.0878 0.9007 2.6384 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2186 2.3170 0.0092 32 1 0.2143 4.7253 -0.0958 33 1 0.1638 7.1737 -0.6508 34 1 0.1487 6.9865 1.1193 35 1 1.1640 8.9902 1.3392 36 1 1.1786 9.1769 -0.4309 37 1 4.4911 7.5534 -0.9344 38 1 3.1221 8.3378 -1.7589 39 1 3.4759 5.5511 -1.1552 40 1 2.1068 6.3354 -1.9790 41 1 4.4697 7.2926 1.5504 42 1 3.0853 7.8899 2.4960 43 1 2.0705 5.8854 2.2755 44 1 3.4547 5.2883 1.3292 45 1 3.8132 4.6500 -0.0104 46 1 5.1612 2.6178 -0.0101 47 1 6.1281 -1.4878 -0.4685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169750961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:53 Heat of formation + Delta-G solvation = 1.075774 kcal Electronic energy + Delta-G solvation = -28423.326389 eV Core-core repulsion = 24763.257318 eV Total energy + Delta-G solvation = -3660.069071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18317 -40.47614 -38.50010 -37.40046 -36.16906 -34.66459 -32.19320 -32.11857 -31.87259 -30.57313 -29.74072 -28.04968 -25.79635 -24.08772 -23.70743 -23.37437 -22.79226 -21.75366 -20.01329 -19.58028 -18.71019 -17.98587 -17.29674 -16.79994 -16.68324 -16.31108 -16.07406 -15.84716 -15.60218 -15.42085 -14.79621 -14.50349 -14.45637 -14.31774 -14.07786 -13.99303 -13.80097 -13.41320 -13.20761 -13.13939 -13.01389 -12.93495 -12.83168 -12.65499 -12.58390 -12.30528 -12.29345 -12.00666 -11.88507 -11.73361 -11.54762 -11.31278 -11.14161 -10.99612 -10.73440 -10.46165 -10.15443 -9.19170 -8.96628 -8.25000 -6.02936 0.93154 1.06243 1.41605 1.62748 1.73135 1.73934 1.81407 2.30137 2.66844 2.78738 2.86332 2.98151 3.54196 3.57516 3.65960 3.92584 4.21903 4.25939 4.30341 4.34637 4.42624 4.43545 4.44201 4.44823 4.46443 4.48429 4.50132 4.52629 4.72693 4.83883 4.91930 5.06687 5.11433 5.16759 5.16918 5.20948 5.29247 5.32372 5.36451 5.37443 5.47469 5.54978 5.56120 5.67565 5.76276 5.91512 6.16153 6.37377 6.53724 6.67004 6.83967 6.95333 7.19744 7.36265 8.20080 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.004105 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.636207 B = 6820.030439 C = 8261.146338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.050 3.950 4 C -0.239 4.239 5 C 0.168 3.832 6 N -0.735 5.735 7 C 0.191 3.809 8 C -0.105 4.105 9 C -0.095 4.095 10 C 0.045 3.955 11 C 0.245 3.755 12 N -0.487 5.487 13 C -0.101 4.101 14 C -0.138 4.138 15 C -0.101 4.101 16 C -0.142 4.142 17 C -0.190 4.190 18 C -0.189 4.189 19 C 0.006 3.994 20 C -0.545 4.545 21 H 0.030 0.970 22 C 0.001 3.999 23 N -0.867 5.867 24 Si 1.105 2.895 25 H -0.252 1.252 26 H -0.262 1.262 27 H -0.288 1.288 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.401 0.599 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.148 0.852 46 H 0.104 0.896 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 18.023 1.084 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.261 6.261 3 C 0.005 3.995 4 C -0.261 4.261 5 C 0.067 3.933 6 N -0.367 5.367 7 C 0.104 3.896 8 C -0.143 4.143 9 C -0.134 4.134 10 C 0.041 3.959 11 C -0.073 4.073 12 N -0.162 5.162 13 C -0.140 4.140 14 C -0.177 4.177 15 C -0.140 4.140 16 C -0.181 4.181 17 C -0.211 4.211 18 C -0.208 4.208 19 C 0.003 3.997 20 C -0.576 4.576 21 H 0.048 0.952 22 C -0.208 4.208 23 N -0.494 5.494 24 Si 0.926 3.074 25 H -0.178 1.178 26 H -0.186 1.186 27 H -0.215 1.215 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.236 0.764 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.165 0.835 46 H 0.122 0.878 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.756 19.983 2.085 23.279 hybrid contribution -1.567 -2.090 -1.315 2.925 sum -13.323 17.893 0.770 22.322 Atomic orbital electron populations 1.23100 0.78321 1.04033 1.01386 1.85982 1.21866 1.28471 1.89733 1.19182 0.91848 0.83821 1.04696 1.20460 0.98955 0.90708 1.16023 1.17028 0.90176 0.85960 1.00146 1.44095 1.07712 1.01391 1.83507 1.20047 0.93018 0.83092 0.93476 1.21632 0.96655 0.91804 1.04186 1.21547 0.89430 0.97862 1.04555 1.18365 0.95894 0.83200 0.98433 1.29435 0.92178 0.94166 0.91483 1.81244 1.10915 1.13721 1.10285 1.21572 1.01150 0.96313 0.94949 1.22196 0.99998 0.96596 0.98904 1.21586 1.01273 0.94151 0.96995 1.22218 1.00342 0.97035 0.98479 1.20699 0.92449 0.98090 1.09911 1.20648 0.98643 0.91904 1.09641 1.17259 0.89577 0.93688 0.99224 1.20093 1.00629 0.96529 1.40374 0.95191 1.28226 0.92031 1.02492 0.98062 1.70682 1.35691 1.13486 1.29553 0.83258 0.76540 0.73195 0.74366 1.17763 1.18635 1.21544 0.92350 0.92533 0.87814 0.84983 0.76387 0.89505 0.89736 0.89564 0.89408 0.91152 0.89548 0.91337 0.90548 0.91100 0.89632 0.90837 0.91036 0.83536 0.87806 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.35 -15.81 9.78 -89.84 -0.88 -16.69 16 3 C 0.05 2.33 6.71 23.02 0.15 2.49 16 4 C -0.24 -8.74 8.87 22.46 0.20 -8.54 16 5 C 0.17 5.49 6.24 38.61 0.24 5.73 16 6 N -0.73 -16.14 5.22 -299.11 -1.56 -17.70 16 7 C 0.19 3.25 0.80 3.60 0.00 3.26 16 8 C -0.10 -1.07 5.11 30.59 0.16 -0.92 16 9 C -0.09 -0.89 4.94 30.60 0.15 -0.74 16 10 C 0.04 0.61 0.69 -53.99 -0.04 0.57 16 11 C 0.24 4.51 13.86 89.44 1.24 5.75 16 12 N -0.49 -11.89 18.54 20.00 0.37 -11.52 16 13 C -0.10 -1.46 4.94 30.58 0.15 -1.30 16 14 C -0.14 -2.48 4.87 30.58 0.15 -2.33 16 15 C -0.10 -1.52 4.95 30.61 0.15 -1.37 16 16 C -0.14 -2.70 4.72 30.61 0.14 -2.56 16 17 C -0.19 -6.95 6.74 22.16 0.15 -6.80 16 18 C -0.19 -8.68 7.35 22.44 0.16 -8.51 16 19 C 0.01 0.32 5.20 -21.17 -0.11 0.21 16 20 C -0.54 -32.54 9.06 23.33 0.21 -32.33 16 21 H 0.03 1.97 7.80 -2.91 -0.02 1.94 16 22 C 0.00 0.05 5.35 85.21 0.46 0.51 16 23 N -0.87 -51.77 13.66 21.82 0.30 -51.47 16 24 Si 1.11 50.89 25.09 68.60 1.72 52.61 16 25 H -0.25 -10.40 6.33 99.48 0.63 -9.77 16 26 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 28 H 0.06 1.56 7.65 -2.38 -0.02 1.54 16 29 H 0.06 1.51 7.67 -2.38 -0.02 1.49 16 30 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.13 3.92 6.29 -2.91 -0.02 3.90 16 32 H 0.40 7.08 8.48 -92.71 -0.79 6.30 16 33 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.61 4.80 -2.39 -0.01 1.60 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.78 4.54 -2.39 -0.01 1.77 16 45 H 0.15 4.50 3.28 -2.91 -0.01 4.49 16 46 H 0.10 4.85 4.30 -2.91 -0.01 4.83 16 47 H 0.27 16.13 8.73 -92.71 -0.81 15.32 16 Total: -1.00 -72.01 356.17 4.75 -67.26 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.11 Total: 22.50 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 4.69 Total: -44.99 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -0.89 Total: -80.69 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.88 Total: -16.69 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.72 Total: 52.61 kcal Total: -72.01 4.75 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169750961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.333 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds