Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48491 * 109.47328 * 274.98968 * 3 2 1 5 5 H 1.48499 * 109.46832 * 34.98966 * 3 2 1 6 6 H 1.48499 * 109.47332 * 154.98771 * 3 2 1 7 7 C 1.37879 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00139 * 189.57304 * 7 2 1 9 9 C 1.50696 * 120.00066 * 9.58347 * 7 2 1 10 10 C 1.53001 * 109.47397 * 185.44316 * 9 7 2 11 11 C 1.53002 * 109.47484 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47103 * 59.99463 * 11 10 9 13 13 N 1.46904 * 109.46936 * 60.00472 * 12 11 10 14 14 C 1.46900 * 110.99967 * 155.00099 * 13 12 11 15 15 C 1.50707 * 109.46800 * 179.97438 * 14 13 12 16 16 C 1.38797 * 120.35085 * 270.26562 * 15 14 13 17 17 C 1.38420 * 118.47734 * 180.26638 * 16 15 14 18 18 C 1.38942 * 119.11030 * 359.73387 * 17 16 15 19 19 N 1.39813 * 119.68972 * 179.97438 * 18 17 16 20 20 C 1.35841 * 126.10247 * 180.02562 * 19 18 17 21 21 C 1.35282 * 107.61312 * 179.97438 * 20 19 18 22 22 C 1.39958 * 107.97032 * 359.97438 * 21 20 19 23 23 N 1.30818 * 108.36306 * 359.71928 * 22 21 20 24 24 N 1.32305 * 120.62227 * 359.97438 * 18 17 16 25 25 C 1.31900 * 121.65046 * 0.02562 * 24 18 17 26 26 C 1.53001 * 109.47389 * 300.00595 * 12 11 10 27 27 C 1.52995 * 109.47380 * 65.43663 * 9 7 2 28 28 H 0.97000 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46929 * 305.43619 * 9 7 2 30 30 H 1.08998 * 109.47100 * 59.99409 * 10 9 7 31 31 H 1.08998 * 109.46998 * 299.99532 * 10 9 7 32 32 H 1.08998 * 109.46855 * 299.99905 * 11 10 9 33 33 H 1.08992 * 109.46829 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47114 * 179.97438 * 12 11 10 35 35 H 1.00908 * 110.99840 * 278.95148 * 13 12 11 36 36 H 1.08997 * 109.47320 * 59.99755 * 14 13 12 37 37 H 1.08997 * 109.46590 * 299.99376 * 14 13 12 38 38 H 1.07996 * 120.76484 * 359.97438 * 16 15 14 39 39 H 1.08006 * 120.44278 * 179.71030 * 17 16 15 40 40 H 1.08002 * 126.19820 * 0.03227 * 20 19 18 41 41 H 1.08004 * 126.01593 * 179.97438 * 21 20 19 42 42 H 1.08003 * 125.81587 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.57676 * 180.02562 * 25 24 18 44 44 H 1.08998 * 109.47100 * 179.97438 * 26 12 11 45 45 H 1.09002 * 109.46512 * 299.99794 * 26 12 11 46 46 H 1.08992 * 109.47712 * 300.00054 * 27 9 7 47 47 H 1.08998 * 109.46904 * 60.00535 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3947 5 1 1.5033 2.6198 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 0.1561 9 6 1.2668 -2.4901 -0.2162 10 6 2.2323 -3.6631 -0.0347 11 6 1.4832 -4.9790 -0.2541 12 6 0.9065 -5.0075 -1.6709 13 7 1.9993 -4.8977 -2.6466 14 6 1.6173 -5.4930 -3.9341 15 6 2.7605 -5.3612 -4.9073 16 6 2.8656 -4.2395 -5.7179 17 6 3.9280 -4.1611 -6.6017 18 6 4.8507 -5.1990 -6.6433 19 7 5.9281 -5.1326 -7.5318 20 6 6.9015 -6.0684 -7.6809 21 6 7.7505 -5.6271 -8.6372 22 6 7.2856 -4.3865 -9.0883 23 7 6.1924 -4.0927 -8.4326 24 7 4.7193 -6.2497 -5.8500 25 6 3.7179 -6.3526 -4.9978 26 6 -0.0589 -3.8345 -1.8524 27 6 0.6906 -2.5183 -1.6332 28 1 -0.4850 0.8401 -0.0004 29 1 0.4558 -2.5719 0.5075 30 1 2.6428 -3.6430 0.9748 31 1 3.0433 -3.5814 -0.7584 32 1 0.6724 -5.0605 0.4698 33 1 2.1711 -5.8145 -0.1253 34 1 0.3732 -5.9452 -1.8274 35 1 2.2849 -3.9369 -2.7630 36 1 0.7431 -4.9753 -4.3287 37 1 1.3814 -6.5475 -3.7909 38 1 2.1326 -3.4481 -5.6638 39 1 4.0379 -3.3047 -7.2506 40 1 6.9824 -6.9971 -7.1355 41 1 8.6320 -6.1416 -8.9904 42 1 7.7481 -3.7775 -9.8511 43 1 3.6434 -7.2250 -4.3655 44 1 -0.4694 -3.8546 -2.8619 45 1 -0.8697 -3.9161 -1.1284 46 1 0.0028 -1.6828 -1.7625 47 1 1.5016 -2.4366 -2.3568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = 107.769590 kcal Electronic energy + Delta-G solvation = -26891.794586 eV Core-core repulsion = 23268.644857 eV Total energy + Delta-G solvation = -3623.149729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74432 -40.23165 -38.56290 -35.21506 -33.52695 -32.76003 -32.09945 -30.61825 -30.03150 -29.71999 -28.38082 -25.43865 -24.46594 -24.12112 -22.71296 -21.59306 -21.07419 -20.96231 -20.74961 -18.63517 -18.12499 -16.70974 -16.32571 -16.27650 -15.72776 -15.40894 -14.87500 -14.66326 -14.41815 -14.29150 -13.91732 -13.69686 -13.60434 -13.35957 -13.26351 -12.98242 -12.63252 -12.59793 -12.09486 -11.91049 -11.65796 -11.34819 -11.18585 -11.06760 -10.83077 -10.70032 -10.51294 -10.20847 -10.11654 -10.07062 -10.02205 -9.86766 -9.40084 -9.36070 -8.89485 -8.67845 -8.43090 -8.29893 -8.02591 -6.01540 -4.02407 0.47487 1.01721 1.86585 1.91530 2.50528 3.29772 3.37614 3.41144 3.56618 4.05673 4.29923 4.44192 4.46629 4.64964 4.74012 4.77341 4.84194 4.98366 5.15999 5.29847 5.37687 5.40883 5.45492 5.55345 5.59961 5.63467 5.65655 5.72660 5.79522 6.03903 6.13443 6.18977 6.25487 6.30926 6.31728 6.43556 6.52135 6.60031 6.79314 6.85628 6.92000 7.10886 7.14908 7.16737 7.34854 7.41467 7.68938 7.70472 7.74484 7.99833 8.04147 8.47969 9.02691 9.61214 11.07226 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.002797 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.689856 B =10009.372500 C =11447.072431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.107 4.107 11 C -0.104 4.104 12 C 0.093 3.907 13 N -0.680 5.680 14 C 0.101 3.899 15 C -0.135 4.135 16 C -0.046 4.046 17 C -0.160 4.160 18 C 0.359 3.641 19 N -0.323 5.323 20 C 0.080 3.920 21 C -0.270 4.270 22 C 0.060 3.940 23 N -0.285 5.285 24 N -0.508 5.508 25 C 0.152 3.848 26 C -0.149 4.149 27 C -0.101 4.101 28 H 0.259 0.741 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.352 0.648 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.192 0.808 43 H 0.168 0.832 44 H 0.039 0.961 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -13.986 -15.311 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.142 4.142 12 C -0.016 4.016 13 N -0.314 5.314 14 C -0.029 4.029 15 C -0.138 4.138 16 C -0.072 4.072 17 C -0.183 4.183 18 C 0.132 3.868 19 N -0.101 5.101 20 C -0.062 4.062 21 C -0.299 4.299 22 C -0.128 4.128 23 N -0.104 5.104 24 N -0.220 5.220 25 C -0.006 4.006 26 C -0.188 4.188 27 C -0.139 4.139 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.173 0.827 42 H 0.209 0.791 43 H 0.185 0.815 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.236 -14.254 -14.902 21.854 hybrid contribution -0.052 1.779 -0.492 1.846 sum 7.185 -12.476 -15.393 21.076 Atomic orbital electron populations 1.69969 1.05890 1.26337 1.50622 1.24958 0.94724 0.98942 0.95192 0.86722 0.80181 0.84047 0.77940 1.20813 1.21381 1.19895 1.21226 0.94078 0.91131 1.48686 0.92813 1.18659 0.94147 0.91819 0.92521 1.21573 0.98855 0.94144 0.99898 1.21526 0.99421 0.98883 0.94338 1.21512 0.90247 0.97051 0.92784 1.60826 1.37908 1.25667 1.06981 1.20802 0.92587 1.00863 0.88621 1.20908 0.99018 0.95486 0.98425 1.21525 0.96410 0.96979 0.92308 1.21569 0.94980 0.99736 1.01965 1.17675 0.86792 0.92105 0.90207 1.45805 1.19251 1.15966 1.29032 1.22932 0.88991 0.95753 0.98532 1.21654 1.05010 0.99030 1.04159 1.24148 0.93203 0.96471 0.98995 1.77468 1.18749 1.09048 1.05124 1.66860 1.24717 1.23493 1.06947 1.22379 0.87203 0.98365 0.92676 1.22270 0.99058 0.97790 0.99727 1.21532 0.98287 0.94526 0.99591 0.93171 0.95142 0.93739 0.92981 0.92596 0.92970 0.91910 0.82542 0.94013 0.90063 0.83797 0.83557 0.80093 0.82721 0.79112 0.81479 0.94210 0.92043 0.90954 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.16 55.43 0.67 -24.58 16 2 C 0.06 1.73 5.20 -17.82 -0.09 1.64 16 3 Si 0.88 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.84 8.48 -34.44 -0.29 -14.14 16 8 H 0.05 1.46 7.77 -52.48 -0.41 1.05 16 9 C 0.05 1.12 1.96 -91.78 -0.18 0.94 16 10 C -0.11 -2.16 4.90 -26.73 -0.13 -2.29 16 11 C -0.10 -1.73 5.64 -26.73 -0.15 -1.88 16 12 C 0.09 1.42 2.86 -67.71 -0.19 1.22 16 13 N -0.68 -9.69 5.75 -107.99 -0.62 -10.31 16 14 C 0.10 1.15 5.63 -4.97 -0.03 1.12 16 15 C -0.14 -1.55 5.41 -104.46 -0.57 -2.11 16 16 C -0.05 -0.53 9.85 -39.31 -0.39 -0.92 16 17 C -0.16 -2.00 9.70 -39.25 -0.38 -2.38 16 18 C 0.36 4.79 7.55 -154.38 -1.17 3.62 16 19 N -0.32 -4.17 3.81 -12.11 -0.05 -4.21 16 20 C 0.08 0.84 11.10 -16.83 -0.19 0.66 16 21 C -0.27 -2.36 10.80 -39.99 -0.43 -2.79 16 22 C 0.06 0.56 12.02 -17.34 -0.21 0.36 16 23 N -0.28 -3.58 11.84 30.64 0.36 -3.22 16 24 N -0.51 -6.47 9.86 -12.29 -0.12 -6.60 16 25 C 0.15 1.73 10.85 -17.57 -0.19 1.54 16 26 C -0.15 -2.59 5.52 -26.71 -0.15 -2.73 16 27 C -0.10 -2.18 4.79 -26.71 -0.13 -2.30 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 1.06 7.21 -51.93 -0.37 0.68 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.84 7.80 -51.93 -0.40 0.44 16 35 H 0.35 5.71 5.56 -39.29 -0.22 5.49 16 36 H 0.04 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 38 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.15 1.76 7.69 -52.48 -0.40 1.35 16 40 H 0.18 1.56 8.05 -52.49 -0.42 1.14 16 41 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.19 1.06 8.06 -52.48 -0.42 0.63 16 43 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.79 6.91 -51.93 -0.36 1.43 16 47 H 0.03 0.69 6.26 -51.93 -0.32 0.36 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -30.38 377.83 -10.98 -41.36 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.04 Total: 6.09 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -4.86 Total: -20.45 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.25 Total: -48.92 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.38 -10.98 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.133 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds