Wall clock time and date at job start Tue Mar 31 2020 14:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48491 * 109.47328 * 274.98968 * 3 2 1 5 5 H 1.48499 * 109.46832 * 34.98966 * 3 2 1 6 6 H 1.48499 * 109.47332 * 154.98771 * 3 2 1 7 7 C 1.37879 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00139 * 189.57304 * 7 2 1 9 9 C 1.50696 * 120.00066 * 9.58347 * 7 2 1 10 10 C 1.53001 * 109.47397 * 185.44316 * 9 7 2 11 11 C 1.53002 * 109.47484 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47103 * 59.99463 * 11 10 9 13 13 N 1.46904 * 109.46936 * 60.00472 * 12 11 10 14 14 C 1.46900 * 110.99967 * 155.00099 * 13 12 11 15 15 C 1.50707 * 109.46800 * 179.97438 * 14 13 12 16 16 C 1.38797 * 120.35085 * 270.26562 * 15 14 13 17 17 C 1.38420 * 118.47734 * 180.26638 * 16 15 14 18 18 C 1.38942 * 119.11030 * 359.73387 * 17 16 15 19 19 N 1.39813 * 119.68972 * 179.97438 * 18 17 16 20 20 C 1.35841 * 126.10247 * 180.02562 * 19 18 17 21 21 C 1.35282 * 107.61312 * 179.97438 * 20 19 18 22 22 C 1.39958 * 107.97032 * 359.97438 * 21 20 19 23 23 N 1.30818 * 108.36306 * 359.71928 * 22 21 20 24 24 N 1.32305 * 120.62227 * 359.97438 * 18 17 16 25 25 C 1.31900 * 121.65046 * 0.02562 * 24 18 17 26 26 C 1.53001 * 109.47389 * 300.00595 * 12 11 10 27 27 C 1.52995 * 109.47380 * 65.43663 * 9 7 2 28 28 H 0.97000 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46929 * 305.43619 * 9 7 2 30 30 H 1.08998 * 109.47100 * 59.99409 * 10 9 7 31 31 H 1.08998 * 109.46998 * 299.99532 * 10 9 7 32 32 H 1.08998 * 109.46855 * 299.99905 * 11 10 9 33 33 H 1.08992 * 109.46829 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47114 * 179.97438 * 12 11 10 35 35 H 1.00908 * 110.99840 * 278.95148 * 13 12 11 36 36 H 1.08997 * 109.47320 * 59.99755 * 14 13 12 37 37 H 1.08997 * 109.46590 * 299.99376 * 14 13 12 38 38 H 1.07996 * 120.76484 * 359.97438 * 16 15 14 39 39 H 1.08006 * 120.44278 * 179.71030 * 17 16 15 40 40 H 1.08002 * 126.19820 * 0.03227 * 20 19 18 41 41 H 1.08004 * 126.01593 * 179.97438 * 21 20 19 42 42 H 1.08003 * 125.81587 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.57676 * 180.02562 * 25 24 18 44 44 H 1.08998 * 109.47100 * 179.97438 * 26 12 11 45 45 H 1.09002 * 109.46512 * 299.99794 * 26 12 11 46 46 H 1.08992 * 109.47712 * 300.00054 * 27 9 7 47 47 H 1.08998 * 109.46904 * 60.00535 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3947 5 1 1.5033 2.6198 0.8029 6 1 3.5955 1.4120 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 0.1561 9 6 1.2668 -2.4901 -0.2162 10 6 2.2323 -3.6631 -0.0347 11 6 1.4832 -4.9790 -0.2541 12 6 0.9065 -5.0075 -1.6709 13 7 1.9993 -4.8977 -2.6466 14 6 1.6173 -5.4930 -3.9341 15 6 2.7605 -5.3612 -4.9073 16 6 2.8656 -4.2395 -5.7179 17 6 3.9280 -4.1611 -6.6017 18 6 4.8507 -5.1990 -6.6433 19 7 5.9281 -5.1326 -7.5318 20 6 6.9015 -6.0684 -7.6809 21 6 7.7505 -5.6271 -8.6372 22 6 7.2856 -4.3865 -9.0883 23 7 6.1924 -4.0927 -8.4326 24 7 4.7193 -6.2497 -5.8500 25 6 3.7179 -6.3526 -4.9978 26 6 -0.0589 -3.8345 -1.8524 27 6 0.6906 -2.5183 -1.6332 28 1 -0.4850 0.8401 -0.0004 29 1 0.4558 -2.5719 0.5075 30 1 2.6428 -3.6430 0.9748 31 1 3.0433 -3.5814 -0.7584 32 1 0.6724 -5.0605 0.4698 33 1 2.1711 -5.8145 -0.1253 34 1 0.3732 -5.9452 -1.8274 35 1 2.2849 -3.9369 -2.7630 36 1 0.7431 -4.9753 -4.3287 37 1 1.3814 -6.5475 -3.7909 38 1 2.1326 -3.4481 -5.6638 39 1 4.0379 -3.3047 -7.2506 40 1 6.9824 -6.9971 -7.1355 41 1 8.6320 -6.1416 -8.9904 42 1 7.7481 -3.7775 -9.8511 43 1 3.6434 -7.2250 -4.3655 44 1 -0.4694 -3.8546 -2.8619 45 1 -0.8697 -3.9161 -1.1284 46 1 0.0028 -1.6828 -1.7625 47 1 1.5016 -2.4366 -2.3568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:38 Heat of formation + Delta-G solvation = 91.697522 kcal Electronic energy + Delta-G solvation = -26892.491523 eV Core-core repulsion = 23268.644857 eV Total energy + Delta-G solvation = -3623.846666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53669 -41.10524 -39.94734 -36.43135 -34.94072 -33.80052 -33.41677 -31.65314 -31.29298 -31.01425 -29.66341 -26.75198 -25.99035 -24.99368 -23.61451 -23.10458 -22.42019 -21.88896 -21.73054 -19.60494 -19.44769 -18.39011 -17.59070 -17.39309 -16.60042 -16.55581 -16.17042 -15.90810 -15.56623 -15.31651 -15.18945 -14.88902 -14.55367 -14.43964 -14.18836 -14.08191 -13.87570 -13.81802 -13.66885 -13.29255 -13.09495 -12.83115 -12.77838 -12.56040 -12.29754 -11.90787 -11.84703 -11.75542 -11.74106 -11.38301 -11.12657 -10.97835 -10.77197 -10.59688 -10.48062 -10.36682 -10.19632 -9.31304 -9.12134 -8.12528 -6.19684 -0.39173 0.13442 1.05516 1.12299 1.36582 1.39063 1.48243 1.82117 2.42144 2.66052 3.17272 3.25197 3.44997 3.49753 3.80684 3.86676 3.93703 4.06098 4.11225 4.14559 4.21842 4.28338 4.41888 4.61759 4.65094 4.68991 4.70966 4.75031 4.82292 4.90680 4.92451 4.94172 5.01024 5.03005 5.10130 5.19495 5.30400 5.32622 5.43092 5.44142 5.52410 5.61731 5.65139 5.69822 6.04059 6.06766 6.13091 6.25621 6.36775 6.44760 6.48124 6.84169 6.94291 7.46888 8.95181 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.002797 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.689856 B =10009.372500 C =11447.072431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.098 4.098 11 C -0.099 4.099 12 C 0.103 3.897 13 N -0.682 5.682 14 C 0.105 3.895 15 C -0.138 4.138 16 C -0.048 4.048 17 C -0.175 4.175 18 C 0.345 3.655 19 N -0.342 5.342 20 C 0.060 3.940 21 C -0.260 4.260 22 C 0.063 3.937 23 N -0.326 5.326 24 N -0.519 5.519 25 C 0.152 3.848 26 C -0.141 4.141 27 C -0.091 4.091 28 H 0.259 0.741 29 H -0.007 1.007 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.339 0.661 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.194 0.806 41 H 0.187 0.813 42 H 0.227 0.773 43 H 0.192 0.808 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -15.730 -16.507 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.136 4.136 11 C -0.137 4.137 12 C -0.007 4.007 13 N -0.315 5.315 14 C -0.024 4.024 15 C -0.141 4.141 16 C -0.074 4.074 17 C -0.197 4.197 18 C 0.118 3.882 19 N -0.120 5.120 20 C -0.081 4.081 21 C -0.288 4.288 22 C -0.125 4.125 23 N -0.145 5.145 24 N -0.232 5.232 25 C -0.006 4.006 26 C -0.180 4.180 27 C -0.129 4.129 28 H 0.068 0.932 29 H 0.011 0.989 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.171 0.829 39 H 0.160 0.840 40 H 0.211 0.789 41 H 0.204 0.796 42 H 0.243 0.757 43 H 0.209 0.791 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.288 -16.017 -16.109 24.181 hybrid contribution -0.294 2.324 -0.149 2.348 sum 7.994 -13.693 -16.257 22.709 Atomic orbital electron populations 1.70083 1.07098 1.26961 1.51529 1.25649 0.95472 1.02006 0.95099 0.85800 0.79031 0.80358 0.78054 1.20255 1.21076 1.19508 1.21620 0.93949 0.92965 1.48441 0.93614 1.18624 0.93561 0.92223 0.92929 1.21420 0.98226 0.94851 0.99126 1.21488 0.99435 0.97113 0.95632 1.21442 0.89924 0.97224 0.92086 1.60817 1.37507 1.24738 1.08398 1.20876 0.92442 1.02034 0.87074 1.20935 0.99260 0.95404 0.98475 1.21695 0.96244 0.97430 0.92055 1.21614 0.95608 0.99846 1.02626 1.17940 0.87265 0.92422 0.90554 1.45959 1.19810 1.16706 1.29548 1.23384 0.89086 0.96148 0.99465 1.22085 1.05245 0.98570 1.02874 1.24861 0.92073 0.96923 0.98597 1.77435 1.20617 1.10118 1.06329 1.66931 1.25383 1.23460 1.07408 1.22831 0.86546 0.98978 0.92266 1.22174 0.98860 0.96348 1.00601 1.21286 0.97807 0.95749 0.98058 0.93220 0.98869 0.94930 0.93146 0.92682 0.90845 0.88548 0.84053 0.93580 0.87591 0.82950 0.83974 0.78932 0.79560 0.75702 0.79089 0.92178 0.93033 0.94899 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 12.16 21.45 0.26 -53.32 16 2 C 0.02 0.92 5.20 84.66 0.44 1.36 16 3 Si 0.94 44.27 29.55 68.60 2.03 46.30 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -29.45 8.48 25.60 0.22 -29.23 16 8 H 0.05 2.54 7.77 -2.91 -0.02 2.52 16 9 C 0.05 2.20 1.96 -11.54 -0.02 2.18 16 10 C -0.10 -3.96 4.90 30.60 0.15 -3.81 16 11 C -0.10 -3.09 5.64 30.59 0.17 -2.92 16 12 C 0.10 2.82 2.86 44.91 0.13 2.95 16 13 N -0.68 -17.63 5.75 -495.57 -2.85 -20.48 16 14 C 0.10 2.05 5.63 85.56 0.48 2.53 16 15 C -0.14 -2.89 5.41 -19.76 -0.11 -3.00 16 16 C -0.05 -1.08 9.85 22.45 0.22 -0.86 16 17 C -0.17 -4.41 9.70 22.48 0.22 -4.20 16 18 C 0.34 9.18 7.55 132.77 1.00 10.18 16 19 N -0.34 -8.77 3.81 -192.21 -0.73 -9.50 16 20 C 0.06 1.20 11.10 83.39 0.93 2.13 16 21 C -0.26 -4.00 10.80 22.00 0.24 -3.76 16 22 C 0.06 1.08 12.02 85.26 1.02 2.11 16 23 N -0.33 -8.12 11.84 -56.97 -0.67 -8.79 16 24 N -0.52 -12.76 9.86 -192.81 -1.90 -14.67 16 25 C 0.15 3.16 10.85 84.65 0.92 4.08 16 26 C -0.14 -4.69 5.52 30.61 0.17 -4.52 16 27 C -0.09 -3.95 4.79 30.61 0.15 -3.81 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H -0.01 -0.38 8.09 -2.39 -0.02 -0.40 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 2.03 7.21 -2.39 -0.02 2.01 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.10 2.12 7.80 -2.39 -0.02 2.10 16 35 H 0.34 10.46 5.56 -89.69 -0.50 9.96 16 36 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 37 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.14 3.58 7.69 -2.91 -0.02 3.55 16 40 H 0.19 3.14 8.05 -2.91 -0.02 3.12 16 41 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.06 1.76 7.45 -2.39 -0.02 1.75 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.03 1.67 6.91 -2.39 -0.02 1.65 16 47 H 0.04 1.52 6.26 -2.39 -0.01 1.51 16 Total: -1.00 -68.20 377.83 2.92 -65.28 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.47 Total: 23.76 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 6.32 Total: -28.59 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.90 Total: -106.76 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.20 2.92 -65.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.979 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds