Wall clock time and date at job start Tue Mar 31 2020 14:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47525 * 239.99890 * 3 2 1 5 5 H 1.48502 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47192 * 119.99890 * 3 2 1 7 7 C 1.37878 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47614 * 300.00401 * 11 10 9 13 13 N 1.46891 * 109.47610 * 180.02562 * 12 11 10 14 14 C 1.46905 * 111.00202 * 154.99869 * 13 12 11 15 15 C 1.50700 * 109.47005 * 179.97438 * 14 13 12 16 16 C 1.38277 * 119.93331 * 90.00099 * 15 14 13 17 17 C 1.38121 * 120.06698 * 179.97438 * 16 15 14 18 18 C 1.38827 * 119.93511 * 359.97395 * 17 16 15 19 19 N 1.40240 * 120.06599 * 180.02562 * 18 17 16 20 20 C 1.36115 * 125.93883 * 180.02562 * 19 18 17 21 21 C 1.35374 * 106.05062 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.53626 * 359.97438 * 21 20 19 23 23 N 1.28606 * 109.05943 * 0.02562 * 22 21 20 24 24 C 1.38822 * 119.86614 * 0.28029 * 18 17 16 25 25 C 1.38128 * 119.93326 * 359.46498 * 24 18 17 26 26 C 1.53004 * 109.47128 * 59.99512 * 12 11 10 27 27 C 1.53002 * 109.47092 * 299.99469 * 9 7 2 28 28 H 0.97000 * 119.99596 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47117 * 59.99797 * 9 7 2 30 30 H 1.09000 * 109.47034 * 60.00015 * 10 9 7 31 31 H 1.09005 * 109.47062 * 299.99948 * 10 9 7 32 32 H 1.09000 * 109.47333 * 180.02562 * 11 10 9 33 33 H 1.09006 * 109.47004 * 59.99856 * 11 10 9 34 34 H 1.09006 * 109.46495 * 300.00328 * 12 11 10 35 35 H 1.00904 * 111.00089 * 31.04286 * 13 12 11 36 36 H 1.08995 * 109.46993 * 59.99872 * 14 13 12 37 37 H 1.09002 * 109.46811 * 299.99605 * 14 13 12 38 38 H 1.08003 * 119.97131 * 359.97192 * 16 15 14 39 39 H 1.08002 * 120.03447 * 179.97438 * 17 16 15 40 40 H 1.07998 * 126.97806 * 359.73856 * 20 19 18 41 41 H 1.07999 * 126.73035 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.03560 * 179.69769 * 24 18 17 43 43 H 1.08005 * 119.96757 * 180.22998 * 25 24 18 44 44 H 1.09000 * 109.47034 * 60.00329 * 26 12 11 45 45 H 1.09000 * 109.46849 * 180.02562 * 26 12 11 46 46 H 1.09000 * 109.47407 * 300.00150 * 27 9 7 47 47 H 1.09000 * 109.46827 * 60.00035 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 0.6009 -5.0679 1.2506 13 7 -0.1331 -6.3402 1.2516 14 6 -0.4993 -6.7358 2.6181 15 6 -1.2496 -8.0422 2.5789 16 6 -0.5593 -9.2372 2.6653 17 6 -1.2443 -10.4361 2.6301 18 6 -2.6272 -10.4406 2.5085 19 7 -3.3254 -11.6563 2.4730 20 6 -4.6740 -11.7999 2.3569 21 6 -4.9105 -13.1328 2.3654 22 7 -3.7194 -13.7302 2.4834 23 7 -2.8026 -12.8304 2.5449 24 6 -3.3170 -9.2394 2.4167 25 6 -2.6270 -8.0435 2.4577 26 6 -0.3933 -3.9049 1.2506 27 6 0.3710 -2.5800 1.2495 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 2.8719 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 2.1885 -5.8157 0.0016 33 1 0.8532 -5.0451 -0.8886 34 1 1.2279 -5.0098 2.1404 35 1 0.4001 -7.0656 0.7958 36 1 -1.1320 -5.9670 3.0616 37 1 0.4040 -6.8530 3.2168 38 1 0.5165 -9.2332 2.7602 39 1 -0.7045 -11.3692 2.6972 40 1 -5.4070 -11.0107 2.2790 41 1 -5.8723 -13.6186 2.2915 42 1 -4.3924 -9.2398 2.3170 43 1 -3.1635 -7.1085 2.3900 44 1 -1.0202 -3.9628 0.3609 45 1 -1.0194 -3.9622 2.1410 46 1 0.9973 -2.5221 2.1397 47 1 -0.3373 -1.7514 1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:18 Heat of formation + Delta-G solvation = 113.760241 kcal Electronic energy + Delta-G solvation = -26159.026221 eV Core-core repulsion = 22536.136267 eV Total energy + Delta-G solvation = -3622.889955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.77264 -39.94732 -38.20413 -35.79148 -34.34037 -32.44830 -32.04972 -31.04723 -30.66452 -29.77945 -28.32851 -25.84218 -24.14284 -24.11200 -23.06985 -21.98094 -21.72619 -21.05403 -20.42411 -19.06866 -18.74656 -16.83119 -16.39631 -16.33388 -15.85497 -15.67406 -15.08418 -14.87702 -14.71941 -14.58835 -14.12310 -13.91268 -13.81235 -13.31418 -13.13257 -12.94472 -12.51606 -12.32900 -12.20258 -11.84236 -11.58078 -11.46502 -11.34696 -11.26940 -11.20637 -10.99054 -10.70566 -10.52760 -10.40925 -10.19325 -9.86321 -9.85835 -9.48600 -9.35970 -8.93759 -8.90940 -8.66081 -8.29666 -8.24971 -5.97296 -4.03439 0.21010 0.87903 1.60390 1.88302 2.17026 3.24125 3.31183 3.36111 3.38648 3.95716 4.12555 4.27739 4.38989 4.44076 4.55166 4.60225 4.73518 4.81037 4.90563 5.05580 5.15149 5.29936 5.33297 5.37656 5.46285 5.56748 5.62129 5.65189 5.78242 5.84274 5.90497 6.09841 6.15724 6.21336 6.27918 6.36271 6.39767 6.50880 6.55322 6.67318 6.73273 6.91076 7.11425 7.19703 7.32848 7.48287 7.54086 7.76248 8.03390 8.06339 8.17309 8.48204 9.00569 9.61012 11.08125 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.039348 B = 0.001817 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.419416 B =15405.476430 C =15779.685617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.116 4.116 12 C 0.091 3.909 13 N -0.682 5.682 14 C 0.093 3.907 15 C -0.061 4.061 16 C -0.096 4.096 17 C -0.099 4.099 18 C 0.109 3.891 19 N -0.237 5.237 20 C -0.049 4.049 21 C -0.046 4.046 22 N -0.267 5.267 23 N -0.081 5.081 24 C -0.115 4.115 25 C -0.076 4.076 26 C -0.101 4.101 27 C -0.110 4.110 28 H 0.260 0.740 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.336 0.664 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.059 0.941 45 H 0.038 0.962 46 H 0.030 0.970 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 -20.290 6.549 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.154 4.154 12 C -0.017 4.017 13 N -0.313 5.313 14 C -0.036 4.036 15 C -0.062 4.062 16 C -0.115 4.115 17 C -0.118 4.118 18 C 0.019 3.981 19 N -0.024 5.024 20 C -0.197 4.197 21 C -0.202 4.202 22 N -0.133 5.133 23 N -0.059 5.059 24 C -0.136 4.136 25 C -0.095 4.095 26 C -0.139 4.139 27 C -0.148 4.148 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.154 0.846 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.070 -20.731 6.553 23.191 hybrid contribution 0.202 1.283 0.250 1.323 sum -7.868 -19.448 6.803 22.054 Atomic orbital electron populations 1.69867 1.05808 1.26362 1.50864 1.24963 0.94840 0.98943 0.95247 0.86718 0.79649 0.83422 0.78539 1.20363 1.21354 1.20402 1.21203 0.92806 0.90853 1.50355 0.92942 1.18647 0.92573 0.91345 0.94377 1.21601 0.98615 0.94127 1.00090 1.21719 0.97661 0.98445 0.97535 1.21652 0.93968 0.88644 0.97433 1.60649 1.49276 1.05683 1.15674 1.20986 0.98199 0.92944 0.91445 1.20136 0.94040 0.95177 0.96870 1.21042 1.00462 0.90850 0.99147 1.20921 0.91293 0.99871 0.99763 1.17665 0.91918 0.81401 1.07160 1.44785 1.05968 1.06359 1.45319 1.23875 0.85628 1.00415 1.09817 1.23670 0.98838 0.90966 1.06744 1.75126 0.98113 1.24046 1.16005 1.78361 1.22239 0.85851 1.19471 1.20892 1.00407 0.90317 1.01993 1.20984 0.93729 0.97515 0.97273 1.21596 0.97166 0.94778 1.00374 1.21621 0.99613 0.95049 0.98558 0.93054 0.95643 0.93584 0.93313 0.93953 0.91731 0.94367 0.84636 0.89550 0.94136 0.84697 0.84129 0.78896 0.78816 0.84799 0.84080 0.92254 0.94330 0.95145 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.17 2.10 -91.77 -0.19 0.98 16 10 C -0.11 -2.11 5.14 -26.73 -0.14 -2.25 16 11 C -0.12 -1.88 5.19 -26.73 -0.14 -2.02 16 12 C 0.09 1.41 2.49 -67.72 -0.17 1.24 16 13 N -0.68 -8.53 6.30 -107.99 -0.68 -9.21 16 14 C 0.09 0.97 5.61 -4.97 -0.03 0.94 16 15 C -0.06 -0.56 5.39 -104.60 -0.56 -1.12 16 16 C -0.10 -0.81 9.69 -39.61 -0.38 -1.19 16 17 C -0.10 -0.90 9.62 -39.41 -0.38 -1.28 16 18 C 0.11 1.03 6.68 -83.57 -0.56 0.47 16 19 N -0.24 -2.40 3.56 -10.47 -0.04 -2.44 16 20 C -0.05 -0.37 10.92 -16.67 -0.18 -0.55 16 21 C -0.05 -0.38 12.05 -17.73 -0.21 -0.59 16 22 N -0.27 -3.19 12.39 30.24 0.37 -2.82 16 23 N -0.08 -1.00 12.42 60.35 0.75 -0.25 16 24 C -0.12 -0.90 9.46 -39.41 -0.37 -1.27 16 25 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 26 C -0.10 -1.84 5.42 -26.75 -0.15 -1.99 16 27 C -0.11 -2.47 4.98 -26.75 -0.13 -2.61 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.60 7.80 -51.93 -0.40 0.20 16 35 H 0.34 3.84 8.34 -39.29 -0.33 3.51 16 36 H 0.09 0.94 7.38 -51.93 -0.38 0.55 16 37 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.14 1.25 7.69 -52.49 -0.40 0.85 16 40 H 0.19 0.67 7.11 -52.49 -0.37 0.29 16 41 H 0.19 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.13 0.69 6.77 -52.49 -0.36 0.34 16 43 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -30.65 378.95 -9.78 -40.43 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.13 Total: 1.75 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -4.37 Total: -24.82 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 1.03 Total: -39.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.65 -9.78 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.186 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds