Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00204 * 2 1 4 4 H 1.48496 * 109.47525 * 239.99890 * 3 2 1 5 5 H 1.48502 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47192 * 119.99890 * 3 2 1 7 7 C 1.37878 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47195 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47614 * 300.00401 * 11 10 9 13 13 N 1.46891 * 109.47610 * 180.02562 * 12 11 10 14 14 C 1.46905 * 111.00202 * 154.99869 * 13 12 11 15 15 C 1.50700 * 109.47005 * 179.97438 * 14 13 12 16 16 C 1.38277 * 119.93331 * 90.00099 * 15 14 13 17 17 C 1.38121 * 120.06698 * 179.97438 * 16 15 14 18 18 C 1.38827 * 119.93511 * 359.97395 * 17 16 15 19 19 N 1.40240 * 120.06599 * 180.02562 * 18 17 16 20 20 C 1.36115 * 125.93883 * 180.02562 * 19 18 17 21 21 C 1.35374 * 106.05062 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.53626 * 359.97438 * 21 20 19 23 23 N 1.28606 * 109.05943 * 0.02562 * 22 21 20 24 24 C 1.38822 * 119.86614 * 0.28029 * 18 17 16 25 25 C 1.38128 * 119.93326 * 359.46498 * 24 18 17 26 26 C 1.53004 * 109.47128 * 59.99512 * 12 11 10 27 27 C 1.53002 * 109.47092 * 299.99469 * 9 7 2 28 28 H 0.97000 * 119.99596 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47117 * 59.99797 * 9 7 2 30 30 H 1.09000 * 109.47034 * 60.00015 * 10 9 7 31 31 H 1.09005 * 109.47062 * 299.99948 * 10 9 7 32 32 H 1.09000 * 109.47333 * 180.02562 * 11 10 9 33 33 H 1.09006 * 109.47004 * 59.99856 * 11 10 9 34 34 H 1.09006 * 109.46495 * 300.00328 * 12 11 10 35 35 H 1.00904 * 111.00089 * 31.04286 * 13 12 11 36 36 H 1.08995 * 109.46993 * 59.99872 * 14 13 12 37 37 H 1.09002 * 109.46811 * 299.99605 * 14 13 12 38 38 H 1.08003 * 119.97131 * 359.97192 * 16 15 14 39 39 H 1.08002 * 120.03447 * 179.97438 * 17 16 15 40 40 H 1.07998 * 126.97806 * 359.73856 * 20 19 18 41 41 H 1.07999 * 126.73035 * 179.97438 * 21 20 19 42 42 H 1.08000 * 120.03560 * 179.69769 * 24 18 17 43 43 H 1.08005 * 119.96757 * 180.22998 * 25 24 18 44 44 H 1.09000 * 109.47034 * 60.00329 * 26 12 11 45 45 H 1.09000 * 109.46849 * 180.02562 * 26 12 11 46 46 H 1.09000 * 109.47407 * 300.00150 * 27 9 7 47 47 H 1.09000 * 109.46827 * 60.00035 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 0.6009 -5.0679 1.2506 13 7 -0.1331 -6.3402 1.2516 14 6 -0.4993 -6.7358 2.6181 15 6 -1.2496 -8.0422 2.5789 16 6 -0.5593 -9.2372 2.6653 17 6 -1.2443 -10.4361 2.6301 18 6 -2.6272 -10.4406 2.5085 19 7 -3.3254 -11.6563 2.4730 20 6 -4.6740 -11.7999 2.3569 21 6 -4.9105 -13.1328 2.3654 22 7 -3.7194 -13.7302 2.4834 23 7 -2.8026 -12.8304 2.5449 24 6 -3.3170 -9.2394 2.4167 25 6 -2.6270 -8.0435 2.4577 26 6 -0.3933 -3.9049 1.2506 27 6 0.3710 -2.5800 1.2495 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 2.8719 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 2.1885 -5.8157 0.0016 33 1 0.8532 -5.0451 -0.8886 34 1 1.2279 -5.0098 2.1404 35 1 0.4001 -7.0656 0.7958 36 1 -1.1320 -5.9670 3.0616 37 1 0.4040 -6.8530 3.2168 38 1 0.5165 -9.2332 2.7602 39 1 -0.7045 -11.3692 2.6972 40 1 -5.4070 -11.0107 2.2790 41 1 -5.8723 -13.6186 2.2915 42 1 -4.3924 -9.2398 2.3170 43 1 -3.1635 -7.1085 2.3900 44 1 -1.0202 -3.9628 0.3609 45 1 -1.0194 -3.9622 2.1410 46 1 0.9973 -2.5221 2.1397 47 1 -0.3373 -1.7514 1.2491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = 96.412409 kcal Electronic energy + Delta-G solvation = -26159.778480 eV Core-core repulsion = 22536.136267 eV Total energy + Delta-G solvation = -3623.642213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.44544 -40.63697 -39.57563 -36.82941 -35.47203 -34.10628 -32.67723 -31.77534 -31.65827 -31.35337 -29.67732 -27.01044 -25.64683 -24.75988 -23.97248 -23.17340 -22.61242 -21.99153 -21.74166 -20.36063 -19.68558 -18.37016 -17.52776 -17.25559 -16.61767 -16.51044 -16.28811 -16.00662 -15.71786 -15.42970 -15.38690 -14.76546 -14.65596 -14.57671 -14.49976 -14.02984 -13.93347 -13.53037 -13.25954 -12.95084 -12.89356 -12.86644 -12.62354 -12.44544 -12.17664 -12.16023 -12.01449 -11.93992 -11.88844 -11.79327 -11.65141 -11.12298 -10.72216 -10.49905 -10.48534 -10.32940 -10.09691 -9.58612 -9.27056 -8.04608 -6.18438 -0.44745 0.26522 0.95557 1.26818 1.42400 1.42867 1.50523 1.51387 2.45059 2.57623 3.21121 3.34158 3.38585 3.58458 3.77241 3.82140 3.95049 4.02189 4.13816 4.19064 4.24341 4.29758 4.46245 4.47547 4.52057 4.63074 4.69475 4.74178 4.78921 4.89984 4.91400 4.96740 5.01374 5.06172 5.07763 5.16351 5.21945 5.29908 5.35514 5.46092 5.52507 5.54755 5.56781 5.64999 5.75157 5.88129 6.08227 6.14280 6.25954 6.45450 6.55577 6.94778 7.36785 7.49272 8.98746 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.039348 B = 0.001817 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.419416 B =15405.476430 C =15779.685617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.100 4.100 11 C -0.108 4.108 12 C 0.104 3.896 13 N -0.682 5.682 14 C 0.096 3.904 15 C -0.068 4.068 16 C -0.093 4.093 17 C -0.110 4.110 18 C 0.095 3.905 19 N -0.242 5.242 20 C -0.040 4.040 21 C -0.052 4.052 22 N -0.303 5.303 23 N -0.123 5.123 24 C -0.108 4.108 25 C -0.080 4.080 26 C -0.091 4.091 27 C -0.102 4.102 28 H 0.259 0.741 29 H -0.010 1.010 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.346 0.654 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.149 0.851 39 H 0.135 0.865 40 H 0.236 0.764 41 H 0.228 0.772 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.025 0.975 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 -20.976 7.092 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.139 4.139 11 C -0.146 4.146 12 C -0.005 4.005 13 N -0.314 5.314 14 C -0.033 4.033 15 C -0.069 4.069 16 C -0.112 4.112 17 C -0.130 4.130 18 C 0.005 3.995 19 N -0.030 5.030 20 C -0.188 4.188 21 C -0.208 4.208 22 N -0.168 5.168 23 N -0.100 5.100 24 C -0.128 4.128 25 C -0.100 4.100 26 C -0.129 4.129 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.009 0.991 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.165 0.835 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.252 0.748 41 H 0.245 0.755 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.632 -21.444 7.098 24.182 hybrid contribution 0.309 1.504 0.068 1.537 sum -8.323 -19.940 7.166 22.765 Atomic orbital electron populations 1.70017 1.07040 1.26956 1.51468 1.25721 0.95669 1.02213 0.95057 0.85751 0.78486 0.79509 0.78730 1.19863 1.21048 1.19718 1.21629 0.92969 0.92549 1.50284 0.93244 1.18634 0.93100 0.92215 0.93465 1.21465 0.97861 0.94513 1.00017 1.21623 0.97993 0.97300 0.97696 1.21344 0.93020 0.89075 0.97090 1.60483 1.48753 1.04782 1.17352 1.20974 0.98687 0.93425 0.90179 1.20064 0.94399 0.94620 0.97791 1.21150 1.01195 0.90304 0.98541 1.20998 0.91691 0.99992 1.00334 1.17932 0.92224 0.81747 1.07636 1.44952 1.07010 1.06030 1.45005 1.24631 0.85165 1.01367 1.07658 1.24349 0.99046 0.91520 1.05912 1.75067 0.99636 1.25032 1.17084 1.78324 1.23097 0.86762 1.21853 1.21142 1.01808 0.89208 1.00642 1.21171 0.93639 0.98198 0.96946 1.21417 0.97327 0.93817 1.00341 1.21399 0.98774 0.96401 0.97471 0.93180 0.99146 0.93362 0.93634 0.90677 0.92515 0.93963 0.83463 0.89959 0.93161 0.83287 0.84695 0.74800 0.75533 0.81920 0.83163 0.93765 0.92805 0.95645 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 2 C 0.01 0.66 5.30 84.65 0.45 1.10 16 3 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -29.43 8.56 25.60 0.22 -29.22 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 9 C 0.04 2.18 2.10 -11.54 -0.02 2.15 16 10 C -0.10 -3.94 5.14 30.59 0.16 -3.78 16 11 C -0.11 -3.33 5.19 30.59 0.16 -3.17 16 12 C 0.10 3.00 2.49 44.92 0.11 3.11 16 13 N -0.68 -15.32 6.30 -495.58 -3.12 -18.45 16 14 C 0.10 1.75 5.61 85.56 0.48 2.23 16 15 C -0.07 -1.08 5.39 -19.85 -0.11 -1.18 16 16 C -0.09 -1.40 9.69 22.25 0.22 -1.18 16 17 C -0.11 -1.91 9.62 22.38 0.22 -1.70 16 18 C 0.10 1.63 6.68 38.08 0.25 1.89 16 19 N -0.24 -4.60 3.56 -187.05 -0.67 -5.26 16 20 C -0.04 -0.49 10.92 83.37 0.91 0.42 16 21 C -0.05 -0.75 12.05 83.74 1.01 0.25 16 22 N -0.30 -7.17 12.39 -58.24 -0.72 -7.89 16 23 N -0.12 -3.03 12.42 37.02 0.46 -2.57 16 24 C -0.11 -1.37 9.46 22.38 0.21 -1.16 16 25 C -0.08 -1.15 9.69 22.25 0.22 -0.93 16 26 C -0.09 -3.26 5.42 30.58 0.17 -3.10 16 27 C -0.10 -4.67 4.98 30.58 0.15 -4.52 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.04 1.22 7.80 -2.38 -0.02 1.20 16 35 H 0.35 6.85 8.34 -89.69 -0.75 6.10 16 36 H 0.08 1.59 7.38 -2.39 -0.02 1.57 16 37 H 0.05 0.84 8.00 -2.39 -0.02 0.83 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.14 2.43 7.69 -2.91 -0.02 2.41 16 40 H 0.24 0.57 7.11 -2.91 -0.02 0.55 16 41 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.16 1.01 6.77 -2.91 -0.02 0.99 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 46 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 Total: -1.00 -69.30 378.95 3.24 -66.06 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.22 Total: 13.87 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.79 Total: -38.79 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.81 Total: -86.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.30 3.24 -66.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.474 kcal (2) G-P(sol) polarization free energy of solvation -69.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds