Wall clock time and date at job start Tue Mar 31 2020 14:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99802 * 2 1 4 4 C 1.46904 * 111.00060 * 123.94906 * 2 1 3 5 5 C 1.52993 * 109.47011 * 75.84871 * 4 2 1 6 6 O 1.42905 * 109.47152 * 61.63078 * 5 4 2 7 7 C 1.35971 * 116.99997 * 179.97438 * 6 5 4 8 8 C 1.38744 * 119.97168 * 179.97438 * 7 6 5 9 9 C 1.38066 * 120.02241 * 180.30187 * 8 7 6 10 10 C 1.38950 * 119.97042 * 359.47461 * 9 8 7 11 11 N 1.39779 * 120.02074 * 180.25126 * 10 9 8 12 12 C 1.38759 * 119.99944 * 31.99988 * 11 10 9 13 13 C 1.39624 * 119.84532 * 29.55071 * 12 11 10 14 14 C 1.36299 * 120.15342 * 179.76147 * 13 12 11 15 15 C 1.40912 * 119.84138 * 0.51468 * 14 13 12 16 16 C 1.41097 * 120.14922 * 179.71888 * 15 14 13 17 17 H 1.07997 * 119.99987 * 26.45427 * 16 15 14 18 18 C 1.39839 * 119.99991 * 206.44622 * 16 15 14 19 19 N 1.30926 * 119.99513 * 15.81588 * 18 16 15 20 20 Si 1.86791 * 120.00339 * 195.81630 * 18 16 15 21 21 H 1.48497 * 109.47203 * 59.99746 * 20 18 16 22 22 H 1.48498 * 109.47270 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46882 * 300.00209 * 20 18 16 24 24 C 1.40906 * 119.69739 * 359.73643 * 15 14 13 25 25 C 1.36305 * 119.83947 * 0.02562 * 24 15 14 26 26 C 1.38947 * 119.95727 * 0.52768 * 10 9 8 27 27 C 1.38066 * 119.97238 * 359.72587 * 26 10 9 28 28 H 1.08998 * 109.47192 * 296.04610 * 1 2 3 29 29 H 1.09003 * 109.47207 * 56.05301 * 1 2 3 30 30 H 1.09005 * 109.46500 * 176.04706 * 1 2 3 31 31 H 1.08996 * 109.47112 * 188.28593 * 3 2 1 32 32 H 1.09007 * 109.47126 * 308.28041 * 3 2 1 33 33 H 1.09001 * 109.47756 * 68.27937 * 3 2 1 34 34 H 1.09003 * 109.46805 * 315.85065 * 4 2 1 35 35 H 1.08996 * 109.47154 * 195.85261 * 4 2 1 36 36 H 1.09000 * 109.47396 * 301.63074 * 5 4 2 37 37 H 1.09002 * 109.47160 * 181.62712 * 5 4 2 38 38 H 1.07997 * 119.99335 * 0.03127 * 8 7 6 39 39 H 1.07997 * 120.01257 * 179.72529 * 9 8 7 40 40 H 0.97002 * 120.00335 * 211.99263 * 11 10 9 41 41 H 1.07995 * 119.92366 * 0.02562 * 13 12 11 42 42 H 1.07998 * 120.07801 * 180.24878 * 14 13 12 43 43 H 0.97002 * 119.99540 * 179.97438 * 19 18 16 44 44 H 1.07999 * 120.07708 * 180.02562 * 24 15 14 45 45 H 1.07998 * 119.91971 * 179.97438 * 25 24 15 46 46 H 1.07998 * 120.01532 * 179.70054 * 26 10 9 47 47 H 1.07999 * 119.98685 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.8490 -2.2626 0.8563 6 8 2.6116 -2.6064 -0.3023 7 6 2.5898 -3.9090 -0.6915 8 6 3.3079 -4.3107 -1.8086 9 6 3.2815 -5.6320 -2.2084 10 6 2.5442 -6.5615 -1.4851 11 7 2.5210 -7.9004 -1.8858 12 6 3.6321 -8.4599 -2.5006 13 6 4.9086 -7.9835 -2.1956 14 6 6.0046 -8.5318 -2.7921 15 6 5.8463 -9.5745 -3.7267 16 6 6.9760 -10.1428 -4.3525 17 1 7.9360 -10.1195 -3.8582 18 6 6.8526 -10.7363 -5.6126 19 7 5.7930 -10.5026 -6.3453 20 14 8.1994 -11.8624 -6.2506 21 1 8.3615 -13.0133 -5.3264 22 1 7.8311 -12.3592 -7.6007 23 1 9.4768 -11.1094 -6.3322 24 6 4.5547 -10.0467 -4.0336 25 6 3.4678 -9.4925 -3.4259 26 6 1.8254 -6.1580 -0.3665 27 6 1.8490 -4.8353 0.0284 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3632 -1.0253 -0.0709 31 1 3.0750 1.3463 -0.1481 32 1 1.5312 1.9389 -0.8068 33 1 1.7706 1.8471 0.9547 34 1 1.4372 -0.5091 2.0380 35 1 3.0485 -0.5246 1.2819 36 1 0.7990 -2.4988 0.6835 37 1 2.2130 -2.8306 1.7125 38 1 3.8842 -3.5889 -2.3683 39 1 3.8370 -5.9437 -3.0805 40 1 1.7283 -8.4385 -1.7340 41 1 5.0281 -7.1816 -1.4822 42 1 6.9917 -8.1650 -2.5523 43 1 5.7076 -10.9141 -7.2196 44 1 4.4263 -10.8459 -4.7486 45 1 2.4772 -9.8532 -3.6604 46 1 1.2482 -6.8788 0.1936 47 1 1.2901 -4.5214 0.8975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176227555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:45 Heat of formation + Delta-G solvation = 6.477763 kcal Electronic energy + Delta-G solvation = -26027.946294 eV Core-core repulsion = 22368.111471 eV Total energy + Delta-G solvation = -3659.834823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15486 -40.04016 -38.78292 -37.82995 -36.15827 -34.65166 -32.14845 -31.70564 -31.03733 -30.69953 -28.80534 -28.45362 -26.42936 -25.38515 -23.80647 -23.29389 -22.51615 -22.15245 -21.40191 -19.25320 -19.03595 -17.99420 -17.94936 -17.21470 -16.96498 -16.56948 -16.00831 -15.77048 -15.59475 -15.56767 -15.25964 -15.13215 -14.53129 -14.31538 -14.09393 -14.00751 -13.75358 -13.62064 -13.42168 -13.31259 -13.21704 -13.07517 -12.91121 -12.72103 -12.59544 -12.55703 -12.34809 -12.24376 -11.76292 -11.62709 -11.55208 -11.30647 -11.06842 -10.67304 -9.89557 -9.46160 -9.24071 -9.15777 -8.58769 -7.92880 -6.13968 0.45209 0.53546 1.08768 1.15914 1.40223 1.51207 1.57036 2.24564 2.41207 2.70420 2.82344 2.96810 3.03202 3.77267 3.90260 4.01779 4.05741 4.13260 4.29265 4.37536 4.41085 4.43904 4.47082 4.48307 4.49495 4.59015 4.65367 4.76087 4.79195 4.85662 4.96390 5.04112 5.04661 5.09171 5.12636 5.20357 5.24979 5.38612 5.46099 5.52201 5.67772 5.72625 5.84456 5.96286 6.08424 6.11793 6.12602 6.34999 6.60457 6.68544 6.82435 6.99819 7.05200 7.18449 8.40784 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.001993 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.573559 B =14044.887874 C =14549.275153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.566 5.566 3 C 0.027 3.973 4 C 0.056 3.944 5 C 0.060 3.940 6 O -0.317 6.317 7 C 0.082 3.918 8 C -0.128 4.128 9 C -0.140 4.140 10 C 0.149 3.851 11 N -0.678 5.678 12 C 0.063 3.937 13 C -0.124 4.124 14 C -0.212 4.212 15 C 0.058 3.942 16 C -0.499 4.499 17 H 0.072 0.928 18 C 0.032 3.968 19 N -0.834 5.834 20 Si 0.981 3.019 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.156 4.156 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.169 4.169 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.408 0.592 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.145 0.855 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 16.724 14.139 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.291 5.291 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.016 4.016 6 O -0.231 6.231 7 C 0.036 3.964 8 C -0.148 4.148 9 C -0.162 4.162 10 C 0.051 3.949 11 N -0.304 5.304 12 C -0.033 4.033 13 C -0.145 4.145 14 C -0.232 4.232 15 C 0.056 3.944 16 C -0.529 4.529 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.461 5.461 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.186 1.186 24 C -0.176 4.176 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.188 4.188 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.244 0.756 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.130 0.870 46 H 0.163 0.837 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.289 16.658 13.358 24.153 hybrid contribution 0.081 -0.486 0.089 0.501 sum -11.208 16.172 13.447 23.832 Atomic orbital electron populations 1.22458 0.86640 1.02316 1.01119 1.61877 1.08743 1.14775 1.43706 1.22385 1.00852 0.87970 1.00895 1.22230 1.01684 0.91069 0.92174 1.23005 0.95625 0.96272 0.86686 1.86137 1.68191 1.22343 1.46414 1.18875 0.98014 0.83963 0.95550 1.20243 1.01991 0.95288 0.97233 1.20767 1.03202 0.92230 0.99977 1.17880 0.98824 0.84097 0.94144 1.41389 1.15370 1.08250 1.65343 1.17228 0.86582 1.00016 0.99470 1.20249 0.91544 1.01517 1.01151 1.20765 0.97235 1.00218 1.04950 1.17912 0.93771 0.90775 0.91980 1.19650 0.96189 1.34695 1.02409 0.90967 1.26690 0.99031 0.96172 0.96242 1.69907 1.29538 1.36297 1.10331 0.85273 0.78255 0.78575 0.77700 1.18538 1.19341 1.18628 1.20862 0.92482 1.01986 1.02241 1.20432 0.98156 0.99986 0.97536 1.20819 1.03259 0.96773 0.95025 1.21193 1.02688 0.92747 1.02130 0.94422 0.91206 0.91698 0.91641 0.91062 0.94611 0.90319 0.90048 0.91596 0.90415 0.85536 0.87516 0.75597 0.87714 0.88522 0.90403 0.87799 0.86951 0.83747 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.39 127.69 1.20 1.49 16 2 N -0.57 -9.24 4.84 -948.83 -4.60 -13.84 16 3 C 0.03 0.35 9.52 127.69 1.22 1.56 16 4 C 0.06 0.77 5.40 86.30 0.47 1.24 16 5 C 0.06 0.97 4.91 71.98 0.35 1.32 16 6 O -0.32 -7.97 10.03 -93.23 -0.94 -8.90 16 7 C 0.08 2.26 6.69 22.51 0.15 2.41 16 8 C -0.13 -4.05 9.98 22.35 0.22 -3.83 16 9 C -0.14 -4.93 7.92 22.40 0.18 -4.75 16 10 C 0.15 4.88 5.85 38.21 0.22 5.11 16 11 N -0.68 -23.50 5.41 -180.10 -0.97 -24.48 16 12 C 0.06 2.71 5.93 38.71 0.23 2.94 16 13 C -0.12 -5.64 7.90 22.15 0.18 -5.47 16 14 C -0.21 -10.72 9.74 22.47 0.22 -10.51 16 15 C 0.06 3.21 5.56 -21.27 -0.12 3.10 16 16 C -0.50 -27.57 9.03 23.36 0.21 -27.36 16 17 H 0.07 3.86 7.89 -2.91 -0.02 3.83 16 18 C 0.03 1.65 5.16 85.22 0.44 2.09 16 19 N -0.83 -44.63 10.96 21.81 0.24 -44.39 16 20 Si 0.98 39.25 29.59 68.60 2.03 41.28 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 C -0.16 -8.25 8.62 22.47 0.19 -8.06 16 25 C -0.14 -6.46 9.88 22.15 0.22 -6.24 16 26 C -0.14 -3.55 9.96 22.40 0.22 -3.33 16 27 C -0.17 -3.96 9.03 22.35 0.20 -3.76 16 28 H 0.04 0.37 8.09 -2.39 -0.02 0.35 16 29 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.06 0.87 6.86 -2.38 -0.02 0.85 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.85 8.05 -2.38 -0.02 0.83 16 33 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 0.71 7.96 -2.39 -0.02 0.69 16 35 H 0.08 1.15 7.94 -2.39 -0.02 1.14 16 36 H 0.07 0.96 6.40 -2.39 -0.02 0.95 16 37 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16 38 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 39 H 0.11 4.30 6.75 -2.91 -0.02 4.28 16 40 H 0.41 11.86 8.90 -92.71 -0.83 11.04 16 41 H 0.10 4.47 6.63 -2.91 -0.02 4.46 16 42 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 44 H 0.10 5.75 6.22 -2.91 -0.02 5.73 16 45 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 46 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.15 2.53 6.29 -2.91 -0.02 2.52 16 Total: -1.00 -63.89 383.10 1.91 -61.98 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: 0.15 Total: 40.39 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 6.00 Total: -52.04 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -5.33 Total: -82.70 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.94 Total: -8.90 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -63.89 1.91 -61.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176227555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.456 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds