Wall clock time and date at job start Tue Mar 31 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46898 * 110.99968 * 2 1 4 4 C 1.46896 * 110.99981 * 123.95961 * 2 1 3 5 5 C 1.52994 * 109.47534 * 76.00481 * 4 2 1 6 6 O 1.42904 * 109.46894 * 67.47793 * 5 4 2 7 7 C 1.35996 * 117.00181 * 180.02562 * 6 5 4 8 8 C 1.38713 * 119.97824 * 359.72591 * 7 6 5 9 9 C 1.38092 * 120.02003 * 179.72781 * 8 7 6 10 10 C 1.38885 * 119.97692 * 0.52783 * 9 8 7 11 11 N 1.39959 * 120.01983 * 179.77149 * 10 9 8 12 12 C 1.39692 * 119.99987 * 213.57007 * 11 10 9 13 13 C 1.39362 * 119.95563 * 30.42827 * 12 11 10 14 14 C 1.38462 * 120.42318 * 179.97438 * 13 12 11 15 15 C 1.37694 * 120.33037 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.89691 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.20715 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00235 * 26.89577 * 17 16 15 19 19 C 1.39931 * 120.00171 * 206.88811 * 17 16 15 20 20 N 1.30841 * 119.99575 * 16.92678 * 19 17 16 21 21 Si 1.86797 * 120.00323 * 196.92407 * 19 17 16 22 22 H 1.48502 * 109.46862 * 94.97552 * 21 19 17 23 23 H 1.48499 * 109.46970 * 214.97884 * 21 19 17 24 24 H 1.48500 * 109.46764 * 334.98072 * 21 19 17 25 25 C 1.38304 * 119.95495 * 210.15708 * 12 11 10 26 26 C 1.38878 * 119.95992 * 359.74349 * 10 9 8 27 27 C 1.38099 * 119.97953 * 0.02562 * 26 10 9 28 28 H 1.08998 * 109.46962 * 296.04464 * 1 2 3 29 29 H 1.09002 * 109.46952 * 56.04387 * 1 2 3 30 30 H 1.09001 * 109.46746 * 176.04212 * 1 2 3 31 31 H 1.09000 * 109.46962 * 188.20653 * 3 2 1 32 32 H 1.09002 * 109.47015 * 308.21129 * 3 2 1 33 33 H 1.09000 * 109.46912 * 68.20626 * 3 2 1 34 34 H 1.09002 * 109.47154 * 316.00808 * 4 2 1 35 35 H 1.08997 * 109.47058 * 196.01223 * 4 2 1 36 36 H 1.08998 * 109.47468 * 307.48301 * 5 4 2 37 37 H 1.09002 * 109.47486 * 187.47346 * 5 4 2 38 38 H 1.08002 * 119.98973 * 0.02562 * 8 7 6 39 39 H 1.08000 * 120.01303 * 180.24736 * 9 8 7 40 40 H 0.97000 * 119.99698 * 33.56863 * 11 10 9 41 41 H 1.07999 * 119.78561 * 0.02562 * 13 12 11 42 42 H 1.08009 * 119.83643 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.05138 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99323 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.16361 * 359.97438 * 25 12 11 46 46 H 1.08007 * 120.01080 * 180.02562 * 26 10 9 47 47 H 1.08007 * 119.98719 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.8527 -2.2628 0.8543 6 8 2.7224 -2.6297 -0.2186 7 6 2.7171 -3.9354 -0.5987 8 6 1.8954 -4.8436 0.0526 9 6 1.8852 -6.1686 -0.3365 10 6 2.7060 -6.5938 -1.3730 11 7 2.6998 -7.9374 -1.7648 12 6 3.8746 -8.5357 -2.2268 13 6 5.1101 -8.1043 -1.7476 14 6 6.2806 -8.6907 -2.1984 15 6 6.2365 -9.7078 -3.1255 16 6 4.9961 -10.1543 -3.6186 17 6 4.9431 -11.1980 -4.5712 18 1 5.7332 -11.9331 -4.6114 19 6 3.8668 -11.2785 -5.4619 20 7 3.0933 -10.2399 -5.6487 21 14 3.5344 -12.8686 -6.3840 22 1 2.5240 -13.6675 -5.6448 23 1 3.0211 -12.5554 -7.7418 24 1 4.7938 -13.6471 -6.4982 25 6 3.8098 -9.5591 -3.1548 26 6 3.5324 -5.6849 -2.0207 27 6 3.5378 -4.3594 -1.6334 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0753 1.3461 -0.1467 32 1 1.5323 1.9384 -0.8075 33 1 1.7695 1.8473 0.9542 34 1 1.4355 -0.5115 2.0373 35 1 3.0479 -0.5227 1.2836 36 1 0.8217 -2.4835 0.5779 37 1 2.1186 -2.8286 1.7472 38 1 1.2599 -4.5134 0.8610 39 1 1.2424 -6.8748 0.1681 40 1 1.8798 -8.4532 -1.7156 41 1 5.1548 -7.3080 -1.0194 42 1 7.2330 -8.3487 -1.8210 43 1 7.1522 -10.1624 -3.4737 44 1 2.3471 -10.2959 -6.2658 45 1 2.8527 -9.8976 -3.5233 46 1 4.1708 -6.0147 -2.8272 47 1 4.1808 -3.6525 -2.1368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176228835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:50 Heat of formation + Delta-G solvation = 18.807311 kcal Electronic energy + Delta-G solvation = -26168.654876 eV Core-core repulsion = 22509.354702 eV Total energy + Delta-G solvation = -3659.300174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96805 -38.59755 -37.61408 -36.69639 -34.39834 -33.23315 -31.02967 -30.30190 -29.50616 -29.01493 -27.91329 -26.64319 -25.24116 -24.69453 -22.61467 -21.91096 -21.12046 -20.83531 -19.87013 -18.04709 -17.42951 -16.58611 -16.48698 -15.97995 -15.52557 -15.36653 -14.84366 -14.77858 -14.65866 -14.46286 -14.10004 -13.49714 -13.14632 -12.98050 -12.89911 -12.86062 -12.67243 -12.44461 -12.32814 -12.10073 -12.02111 -11.86223 -11.68360 -11.41800 -11.32579 -11.09778 -10.82996 -10.63785 -10.50756 -10.41881 -9.78266 -9.73383 -9.38991 -9.05313 -8.66698 -8.65307 -7.66879 -7.37476 -6.75516 -6.24890 -4.36634 1.67305 1.83781 2.81554 3.07652 3.09341 3.12422 3.24261 3.34684 3.59216 3.95088 4.13785 4.19801 4.65016 4.66734 4.72962 4.87977 5.00761 5.05019 5.08086 5.15625 5.22047 5.23154 5.30888 5.47445 5.57651 5.60652 5.68315 5.69527 5.76112 5.99721 6.21729 6.31916 6.37986 6.55045 6.63053 6.65979 6.68613 6.78468 6.81631 6.99565 7.08560 7.14843 7.29429 7.36392 7.67569 7.80947 7.88713 8.00195 8.09059 8.40494 8.51973 8.72620 8.92160 8.99327 10.22151 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.002113 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.598861 B =13246.363407 C =13650.414664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.068 3.932 6 O -0.304 6.304 7 C 0.081 3.919 8 C -0.179 4.179 9 C -0.145 4.145 10 C 0.173 3.827 11 N -0.691 5.691 12 C 0.180 3.820 13 C -0.268 4.268 14 C -0.075 4.075 15 C -0.241 4.241 16 C 0.131 3.869 17 C -0.465 4.465 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.199 4.199 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.399 0.601 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.279 0.721 45 H 0.117 0.883 46 H 0.136 0.864 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 16.527 11.398 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.008 4.008 6 O -0.218 6.218 7 C 0.035 3.965 8 C -0.198 4.198 9 C -0.167 4.167 10 C 0.074 3.926 11 N -0.315 5.315 12 C 0.085 3.915 13 C -0.290 4.290 14 C -0.093 4.093 15 C -0.261 4.261 16 C 0.128 3.872 17 C -0.495 4.495 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.419 5.419 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.222 4.222 26 C -0.137 4.137 27 C -0.137 4.137 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.233 0.767 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.135 0.865 46 H 0.153 0.847 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.345 16.568 10.717 20.728 hybrid contribution -1.064 -0.581 0.413 1.281 sum -7.410 15.987 11.130 20.842 Atomic orbital electron populations 1.22476 0.87374 1.02461 1.00413 1.61890 1.07809 1.13841 1.42933 1.22392 1.01221 0.88504 1.00105 1.22192 1.01501 0.92145 0.91480 1.22678 0.94004 0.94796 0.89342 1.86119 1.61400 1.23134 1.51178 1.18781 0.97973 0.82923 0.96826 1.20845 1.02622 0.93707 1.02650 1.20579 1.03316 0.95738 0.97035 1.17692 0.96906 0.84760 0.93258 1.42078 1.10655 1.07828 1.70913 1.17585 0.84651 0.94853 0.94378 1.20143 0.91614 1.08244 1.08999 1.20353 0.95710 0.96303 0.96982 1.20977 0.96817 1.02619 1.05666 1.17371 0.90098 0.90210 0.89552 1.19554 1.05888 1.10253 1.13839 0.90384 1.25889 0.94871 0.97002 0.96343 1.69849 1.14009 1.28633 1.29383 0.86333 0.79619 0.82291 0.78661 1.19465 1.20368 1.18601 1.20927 0.99401 1.02316 0.99534 1.20956 1.01406 0.91189 1.00141 1.20202 1.00454 0.95619 0.97400 0.95755 0.91191 0.91242 0.91078 0.91324 0.95847 0.92676 0.89647 0.92349 0.92111 0.86299 0.86314 0.76662 0.89076 0.89228 0.89031 0.91036 0.86521 0.84667 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 60.07 0.56 0.72 16 2 N -0.54 -4.99 4.92 -251.26 -1.24 -6.23 16 3 C 0.03 0.19 9.51 60.06 0.57 0.76 16 4 C 0.05 0.46 5.38 -3.83 -0.02 0.44 16 5 C 0.07 0.68 4.95 37.15 0.18 0.86 16 6 O -0.30 -4.20 10.12 -19.73 -0.20 -4.40 16 7 C 0.08 1.21 6.69 -39.23 -0.26 0.95 16 8 C -0.18 -2.50 9.03 -39.46 -0.36 -2.86 16 9 C -0.14 -2.21 9.96 -39.40 -0.39 -2.60 16 10 C 0.17 3.11 5.80 -83.67 -0.49 2.62 16 11 N -0.69 -13.46 5.45 -8.42 -0.05 -13.50 16 12 C 0.18 4.12 5.88 -83.83 -0.49 3.63 16 13 C -0.27 -6.03 8.11 -39.08 -0.32 -6.35 16 14 C -0.07 -1.69 10.01 -39.70 -0.40 -2.09 16 15 C -0.24 -5.92 9.79 -38.83 -0.38 -6.30 16 16 C 0.13 3.47 5.54 -106.85 -0.59 2.88 16 17 C -0.47 -12.30 9.04 -37.74 -0.34 -12.64 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 19 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 20 N -0.79 -20.51 11.08 55.55 0.62 -19.89 16 21 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.20 -5.07 8.57 -38.67 -0.33 -5.41 16 26 C -0.12 -2.09 8.04 -39.40 -0.32 -2.41 16 27 C -0.12 -1.90 9.98 -39.46 -0.39 -2.30 16 28 H 0.02 0.16 8.09 -51.93 -0.42 -0.26 16 29 H 0.07 0.49 8.07 -51.93 -0.42 0.08 16 30 H 0.07 0.55 6.78 -51.93 -0.35 0.19 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.06 0.36 7.95 -51.93 -0.41 -0.06 16 35 H 0.09 0.71 7.93 -51.93 -0.41 0.30 16 36 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 37 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.12 1.34 6.29 -52.49 -0.33 1.01 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.40 7.03 8.92 -40.82 -0.36 6.67 16 41 H 0.09 1.95 6.77 -52.49 -0.36 1.60 16 42 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 44 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 45 H 0.12 3.07 6.33 -52.49 -0.33 2.74 16 46 H 0.14 2.68 6.91 -52.48 -0.36 2.32 16 47 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -28.87 384.00 -10.95 -39.81 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.99 Total: 13.03 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -3.85 Total: -28.26 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.67 Total: -39.62 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.87 -10.95 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176228835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.619 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds