Wall clock time and date at job start Tue Mar 31 2020 14:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46898 * 110.99968 * 2 1 4 4 C 1.46896 * 110.99981 * 123.95961 * 2 1 3 5 5 C 1.52994 * 109.47534 * 76.00481 * 4 2 1 6 6 O 1.42904 * 109.46894 * 67.47793 * 5 4 2 7 7 C 1.35996 * 117.00181 * 180.02562 * 6 5 4 8 8 C 1.38713 * 119.97824 * 359.72591 * 7 6 5 9 9 C 1.38092 * 120.02003 * 179.72781 * 8 7 6 10 10 C 1.38885 * 119.97692 * 0.52783 * 9 8 7 11 11 N 1.39959 * 120.01983 * 179.77149 * 10 9 8 12 12 C 1.39692 * 119.99987 * 213.57007 * 11 10 9 13 13 C 1.39362 * 119.95563 * 30.42827 * 12 11 10 14 14 C 1.38462 * 120.42318 * 179.97438 * 13 12 11 15 15 C 1.37694 * 120.33037 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.89691 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.20715 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00235 * 26.89577 * 17 16 15 19 19 C 1.39931 * 120.00171 * 206.88811 * 17 16 15 20 20 N 1.30841 * 119.99575 * 16.92678 * 19 17 16 21 21 Si 1.86797 * 120.00323 * 196.92407 * 19 17 16 22 22 H 1.48502 * 109.46862 * 94.97552 * 21 19 17 23 23 H 1.48499 * 109.46970 * 214.97884 * 21 19 17 24 24 H 1.48500 * 109.46764 * 334.98072 * 21 19 17 25 25 C 1.38304 * 119.95495 * 210.15708 * 12 11 10 26 26 C 1.38878 * 119.95992 * 359.74349 * 10 9 8 27 27 C 1.38099 * 119.97953 * 0.02562 * 26 10 9 28 28 H 1.08998 * 109.46962 * 296.04464 * 1 2 3 29 29 H 1.09002 * 109.46952 * 56.04387 * 1 2 3 30 30 H 1.09001 * 109.46746 * 176.04212 * 1 2 3 31 31 H 1.09000 * 109.46962 * 188.20653 * 3 2 1 32 32 H 1.09002 * 109.47015 * 308.21129 * 3 2 1 33 33 H 1.09000 * 109.46912 * 68.20626 * 3 2 1 34 34 H 1.09002 * 109.47154 * 316.00808 * 4 2 1 35 35 H 1.08997 * 109.47058 * 196.01223 * 4 2 1 36 36 H 1.08998 * 109.47468 * 307.48301 * 5 4 2 37 37 H 1.09002 * 109.47486 * 187.47346 * 5 4 2 38 38 H 1.08002 * 119.98973 * 0.02562 * 8 7 6 39 39 H 1.08000 * 120.01303 * 180.24736 * 9 8 7 40 40 H 0.97000 * 119.99698 * 33.56863 * 11 10 9 41 41 H 1.07999 * 119.78561 * 0.02562 * 13 12 11 42 42 H 1.08009 * 119.83643 * 179.97438 * 14 13 12 43 43 H 1.08006 * 120.05138 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99323 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.16361 * 359.97438 * 25 12 11 46 46 H 1.08007 * 120.01080 * 180.02562 * 26 10 9 47 47 H 1.08007 * 119.98719 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.8527 -2.2628 0.8543 6 8 2.7224 -2.6297 -0.2186 7 6 2.7171 -3.9354 -0.5987 8 6 1.8954 -4.8436 0.0526 9 6 1.8852 -6.1686 -0.3365 10 6 2.7060 -6.5938 -1.3730 11 7 2.6998 -7.9374 -1.7648 12 6 3.8746 -8.5357 -2.2268 13 6 5.1101 -8.1043 -1.7476 14 6 6.2806 -8.6907 -2.1984 15 6 6.2365 -9.7078 -3.1255 16 6 4.9961 -10.1543 -3.6186 17 6 4.9431 -11.1980 -4.5712 18 1 5.7332 -11.9331 -4.6114 19 6 3.8668 -11.2785 -5.4619 20 7 3.0933 -10.2399 -5.6487 21 14 3.5344 -12.8686 -6.3840 22 1 2.5240 -13.6675 -5.6448 23 1 3.0211 -12.5554 -7.7418 24 1 4.7938 -13.6471 -6.4982 25 6 3.8098 -9.5591 -3.1548 26 6 3.5324 -5.6849 -2.0207 27 6 3.5378 -4.3594 -1.6334 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0753 1.3461 -0.1467 32 1 1.5323 1.9384 -0.8075 33 1 1.7695 1.8473 0.9542 34 1 1.4355 -0.5115 2.0373 35 1 3.0479 -0.5227 1.2836 36 1 0.8217 -2.4835 0.5779 37 1 2.1186 -2.8286 1.7472 38 1 1.2599 -4.5134 0.8610 39 1 1.2424 -6.8748 0.1681 40 1 1.8798 -8.4532 -1.7156 41 1 5.1548 -7.3080 -1.0194 42 1 7.2330 -8.3487 -1.8210 43 1 7.1522 -10.1624 -3.4737 44 1 2.3471 -10.2959 -6.2658 45 1 2.8527 -9.8976 -3.5233 46 1 4.1708 -6.0147 -2.8272 47 1 4.1808 -3.6525 -2.1368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176228835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:49 Heat of formation + Delta-G solvation = 3.231657 kcal Electronic energy + Delta-G solvation = -26169.330287 eV Core-core repulsion = 22509.354702 eV Total energy + Delta-G solvation = -3659.975585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16580 -39.97452 -38.75515 -37.82417 -35.99322 -34.99079 -32.19320 -31.45675 -31.22041 -30.46218 -28.47054 -28.09509 -27.14391 -25.48615 -23.79805 -23.21346 -22.71322 -22.04339 -21.34870 -19.29547 -19.05307 -18.06782 -17.51682 -17.23441 -16.84966 -16.47329 -16.24945 -16.01225 -15.63400 -15.58459 -15.27628 -15.11994 -14.62324 -14.34533 -14.21574 -14.05135 -13.76310 -13.51454 -13.47555 -13.28838 -13.14970 -13.06189 -12.77958 -12.63330 -12.58389 -12.49950 -12.27922 -12.12704 -11.86802 -11.65672 -11.54079 -11.47554 -11.13320 -10.72898 -9.92006 -9.29050 -9.25459 -9.18073 -8.61891 -7.83026 -6.34829 0.42422 0.50308 1.04123 1.25739 1.39038 1.52455 1.54640 2.22458 2.37755 2.64182 2.77667 2.92836 3.01443 3.77718 3.88239 3.98969 4.04983 4.13621 4.28786 4.35308 4.43525 4.45846 4.46331 4.48712 4.57355 4.65476 4.71695 4.74703 4.77225 4.84673 4.93023 5.04017 5.04613 5.07796 5.11178 5.17544 5.24851 5.39718 5.42046 5.45119 5.61832 5.76389 5.95399 6.06018 6.08097 6.11526 6.13567 6.23248 6.52415 6.64749 6.87132 6.96786 6.99204 7.12399 8.36795 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.002113 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.598861 B =13246.363407 C =13650.414664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.057 3.943 5 C 0.059 3.941 6 O -0.317 6.317 7 C 0.089 3.911 8 C -0.170 4.170 9 C -0.133 4.133 10 C 0.144 3.856 11 N -0.691 5.691 12 C 0.191 3.809 13 C -0.267 4.267 14 C -0.072 4.072 15 C -0.263 4.263 16 C 0.101 3.899 17 C -0.501 4.501 18 H 0.075 0.925 19 C 0.036 3.964 20 N -0.825 5.825 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.225 4.225 26 C -0.130 4.130 27 C -0.128 4.128 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.285 0.715 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 17.819 13.299 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.293 5.293 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.016 4.016 6 O -0.231 6.231 7 C 0.043 3.957 8 C -0.189 4.189 9 C -0.154 4.154 10 C 0.047 3.953 11 N -0.316 5.316 12 C 0.094 3.906 13 C -0.289 4.289 14 C -0.090 4.090 15 C -0.283 4.283 16 C 0.099 3.901 17 C -0.531 4.531 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.182 1.182 25 C -0.248 4.248 26 C -0.151 4.151 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.241 0.759 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.619 17.911 12.650 23.214 hybrid contribution -0.712 -0.702 -0.028 1.001 sum -8.331 17.209 12.621 22.910 Atomic orbital electron populations 1.22472 0.86633 1.02356 1.01171 1.61881 1.08753 1.14865 1.43754 1.22383 1.00874 0.87913 1.00919 1.22214 1.01774 0.90984 0.92152 1.23027 0.93702 0.96147 0.88768 1.86129 1.62355 1.22132 1.52494 1.18858 0.97018 0.83870 0.95922 1.21189 1.02143 0.92741 1.02859 1.20841 1.02099 0.96771 0.95690 1.17883 0.98710 0.83768 0.94952 1.41980 1.09845 1.08689 1.71050 1.17627 0.86212 0.93702 0.93011 1.20338 0.91460 1.08232 1.08884 1.20688 0.97228 0.95201 0.95920 1.21134 0.96481 1.03807 1.06873 1.17756 0.91217 0.90939 0.90235 1.19796 1.07164 1.11001 1.15140 0.90662 1.26731 0.94071 1.00259 0.96829 1.69916 1.14542 1.30517 1.30152 0.85209 0.79502 0.77665 0.77413 1.18732 1.19449 1.18221 1.20830 0.98486 1.04197 1.01255 1.20778 1.01880 0.92316 1.00151 1.20254 1.01283 0.94957 0.98271 0.94391 0.91162 0.91649 0.91580 0.91042 0.94598 0.90276 0.89924 0.91619 0.90299 0.82760 0.83991 0.75917 0.87752 0.86138 0.88531 0.90416 0.88171 0.87446 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.40 127.69 1.20 1.48 16 2 N -0.57 -9.21 4.92 -948.84 -4.67 -13.89 16 3 C 0.03 0.34 9.51 127.69 1.21 1.56 16 4 C 0.06 0.78 5.38 86.30 0.46 1.24 16 5 C 0.06 0.97 4.95 71.98 0.36 1.33 16 6 O -0.32 -7.97 10.12 -93.50 -0.95 -8.92 16 7 C 0.09 2.49 6.69 22.49 0.15 2.65 16 8 C -0.17 -4.18 9.03 22.35 0.20 -3.98 16 9 C -0.13 -3.71 9.96 22.39 0.22 -3.49 16 10 C 0.14 5.09 5.80 38.15 0.22 5.31 16 11 N -0.69 -27.13 5.45 -180.54 -0.98 -28.11 16 12 C 0.19 8.95 5.88 38.17 0.22 9.18 16 13 C -0.27 -12.08 8.11 22.59 0.18 -11.90 16 14 C -0.07 -3.25 10.01 22.19 0.22 -3.03 16 15 C -0.26 -13.30 9.79 22.76 0.22 -13.08 16 16 C 0.10 5.62 5.54 -21.31 -0.12 5.50 16 17 C -0.50 -27.60 9.04 23.46 0.21 -27.39 16 18 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 19 C 0.04 1.84 5.14 85.25 0.44 2.27 16 20 N -0.83 -44.14 11.08 21.82 0.24 -43.90 16 21 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 C -0.22 -11.96 8.57 22.86 0.20 -11.76 16 26 C -0.13 -4.74 8.04 22.39 0.18 -4.56 16 27 C -0.13 -4.09 9.98 22.35 0.22 -3.86 16 28 H 0.04 0.38 8.09 -2.39 -0.02 0.36 16 29 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.06 0.87 6.78 -2.39 -0.02 0.86 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.84 8.05 -2.39 -0.02 0.82 16 33 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 0.72 7.95 -2.39 -0.02 0.71 16 35 H 0.08 1.18 7.93 -2.39 -0.02 1.16 16 36 H 0.07 1.01 6.26 -2.39 -0.01 0.99 16 37 H 0.08 1.04 7.65 -2.39 -0.02 1.02 16 38 H 0.15 2.70 6.29 -2.91 -0.02 2.68 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.40 14.43 8.92 -92.71 -0.83 13.60 16 41 H 0.10 4.41 6.77 -2.91 -0.02 4.39 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.29 13.86 8.30 -92.71 -0.77 13.10 16 45 H 0.10 5.56 6.33 -2.91 -0.02 5.54 16 46 H 0.11 4.46 6.91 -2.91 -0.02 4.44 16 47 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -64.30 384.00 1.83 -62.46 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: 0.15 Total: 43.89 kcal Atomic # 6 Polarization: -58.55 SS G_CDS: 6.01 Total: -52.54 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -5.41 Total: -85.89 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.95 Total: -8.92 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -64.30 1.83 -62.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176228835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.694 kcal (2) G-P(sol) polarization free energy of solvation -64.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds