Wall clock time and date at job start Tue Mar 31 2020 14:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99824 * 2 1 4 4 C 1.46892 * 111.00052 * 123.95715 * 2 1 3 5 5 C 1.53006 * 109.47162 * 75.70023 * 4 2 1 6 6 O 1.42898 * 109.47036 * 63.91372 * 5 4 2 7 7 C 1.35973 * 116.99839 * 180.02562 * 6 5 4 8 8 C 1.38746 * 119.97462 * 179.97438 * 7 6 5 9 9 C 1.38058 * 120.02074 * 179.97438 * 8 7 6 10 10 C 1.38949 * 119.97839 * 0.02562 * 9 8 7 11 11 N 1.39772 * 120.02371 * 179.97438 * 10 9 8 12 12 C 1.38632 * 119.99601 * 185.53729 * 11 10 9 13 13 C 1.38831 * 120.30169 * 255.55168 * 12 11 10 14 14 C 1.38099 * 120.02031 * 180.32182 * 13 12 11 15 15 C 1.38933 * 120.63669 * 359.67777 * 14 13 12 16 16 C 1.36423 * 120.61179 * 0.02562 * 15 14 13 17 17 C 1.40739 * 119.95234 * 359.97438 * 16 15 14 18 18 C 1.41002 * 120.31296 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00376 * 205.03524 * 18 17 16 20 20 C 1.39897 * 119.99732 * 25.02308 * 18 17 16 21 21 N 1.30896 * 119.99972 * 16.14732 * 20 18 17 22 22 Si 1.86806 * 120.00000 * 196.14217 * 20 18 17 23 23 H 1.48508 * 109.46641 * 265.02175 * 22 20 18 24 24 H 1.48502 * 109.47186 * 25.01815 * 22 20 18 25 25 H 1.48496 * 109.47283 * 145.02375 * 22 20 18 26 26 C 1.38949 * 119.95107 * 0.25003 * 10 9 8 27 27 C 1.38064 * 119.97427 * 359.51313 * 26 10 9 28 28 H 1.09007 * 109.47067 * 296.04310 * 1 2 3 29 29 H 1.08996 * 109.47205 * 56.04334 * 1 2 3 30 30 H 1.08994 * 109.47323 * 176.04217 * 1 2 3 31 31 H 1.09002 * 109.46790 * 188.04852 * 3 2 1 32 32 H 1.09002 * 109.47605 * 308.05072 * 3 2 1 33 33 H 1.08999 * 109.46899 * 68.05126 * 3 2 1 34 34 H 1.08999 * 109.47455 * 315.69790 * 4 2 1 35 35 H 1.08999 * 109.47194 * 195.69440 * 4 2 1 36 36 H 1.09000 * 109.46840 * 303.91180 * 5 4 2 37 37 H 1.09002 * 109.46678 * 183.91494 * 5 4 2 38 38 H 1.07999 * 119.98963 * 359.97438 * 8 7 6 39 39 H 1.08002 * 120.01210 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99976 * 5.53361 * 11 10 9 41 41 H 1.08000 * 119.98922 * 0.02654 * 13 12 11 42 42 H 1.07998 * 119.68072 * 179.70437 * 14 13 12 43 43 H 1.08004 * 119.69349 * 180.02562 * 15 14 13 44 44 H 1.07998 * 120.02320 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99697 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.01597 * 179.74604 * 26 10 9 47 47 H 1.07997 * 119.98870 * 180.25374 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8456 -2.2627 0.8575 6 8 2.6479 -2.6191 -0.2700 7 6 2.6277 -3.9232 -0.6545 8 6 3.3834 -4.3370 -1.7421 9 6 3.3640 -5.6609 -2.1330 10 6 2.5870 -6.5790 -1.4373 11 7 2.5662 -7.9195 -1.8325 12 6 1.7050 -8.8116 -1.2126 13 6 2.1907 -9.7268 -0.2885 14 6 1.3287 -10.6173 0.3206 15 6 -0.0284 -10.6047 0.0236 16 6 -0.5345 -9.7125 -0.8759 17 6 0.3213 -8.7936 -1.5116 18 6 -0.1937 -7.8678 -2.4420 19 1 0.4484 -7.4571 -3.2073 20 6 -1.5365 -7.4813 -2.3742 21 7 -2.2309 -7.7153 -1.2896 22 14 -2.3385 -6.6310 -3.8315 23 1 -2.2728 -5.1594 -3.6434 24 1 -1.6217 -7.0032 -5.0777 25 1 -3.7583 -7.0544 -3.9317 26 6 1.8261 -6.1623 -0.3518 27 6 1.8507 -4.8388 0.0404 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0756 1.3459 -0.1439 32 1 1.5343 1.9377 -0.8092 33 1 1.7670 1.8482 0.9532 34 1 1.4391 -0.5074 2.0384 35 1 3.0493 -0.5268 1.2800 36 1 0.8007 -2.4900 0.6464 37 1 2.1718 -2.8298 1.7294 38 1 3.9870 -3.6232 -2.2829 39 1 3.9520 -5.9828 -2.9798 40 1 3.1543 -8.2255 -2.5406 41 1 3.2438 -9.7455 -0.0496 42 1 1.7132 -11.3301 1.0351 43 1 -0.6890 -11.3078 0.5093 44 1 -1.5911 -9.7108 -1.0993 45 1 -3.1621 -7.4476 -1.2427 46 1 1.2185 -6.8742 0.1872 47 1 1.2626 -4.5155 0.8866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176229426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:53 Heat of formation + Delta-G solvation = 22.253979 kcal Electronic energy + Delta-G solvation = -27264.094770 eV Core-core repulsion = 23604.944055 eV Total energy + Delta-G solvation = -3659.150715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.58154 -38.41471 -37.48389 -36.44697 -33.89063 -33.62104 -30.55234 -30.15092 -29.59390 -28.77281 -27.72470 -26.70961 -25.02706 -24.46698 -22.32766 -21.64099 -20.99550 -20.56889 -19.81941 -17.67690 -17.30728 -16.52643 -16.23537 -16.08255 -15.25298 -15.21347 -15.03711 -14.49048 -14.38320 -14.09407 -13.77464 -13.63995 -13.04633 -12.78469 -12.70328 -12.57378 -12.47500 -12.31048 -12.21426 -11.82999 -11.75598 -11.63994 -11.62620 -11.18032 -11.11128 -11.08114 -10.91656 -10.69885 -10.46796 -10.07951 -9.86763 -9.65175 -9.21566 -8.74652 -8.46328 -8.27995 -7.47375 -7.44084 -6.83048 -6.20636 -4.39051 2.08048 2.39138 2.72424 2.91778 3.05809 3.10521 3.21220 3.66095 3.81763 3.91330 4.51876 4.61234 4.65719 4.88425 4.92351 5.10235 5.18707 5.30737 5.38755 5.40918 5.49695 5.55256 5.58824 5.63399 5.69696 5.72795 5.85275 6.02619 6.10878 6.18729 6.34035 6.38353 6.55110 6.71483 6.77057 6.86231 6.88609 7.01815 7.13081 7.18114 7.20387 7.27215 7.35713 7.48608 7.71968 7.91297 8.05126 8.07486 8.21735 8.42132 8.61916 8.75218 8.83150 9.08594 10.11486 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003654 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.450195 B = 7660.051473 C = 8834.350292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.027 3.973 4 C 0.056 3.944 5 C 0.069 3.931 6 O -0.307 6.307 7 C 0.054 3.946 8 C -0.110 4.110 9 C -0.175 4.175 10 C 0.208 3.792 11 N -0.670 5.670 12 C 0.002 3.998 13 C -0.088 4.088 14 C -0.242 4.242 15 C -0.104 4.104 16 C -0.158 4.158 17 C 0.112 3.888 18 C -0.436 4.436 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.789 5.789 22 Si 0.903 3.097 23 H -0.269 1.269 24 H -0.260 1.260 25 H -0.276 1.276 26 C -0.122 4.122 27 C -0.163 4.163 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.388 0.612 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.280 0.720 46 H 0.128 0.872 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 11.454 3.006 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.008 4.008 6 O -0.222 6.222 7 C 0.008 3.992 8 C -0.130 4.130 9 C -0.198 4.198 10 C 0.106 3.894 11 N -0.292 5.292 12 C -0.092 4.092 13 C -0.108 4.108 14 C -0.262 4.262 15 C -0.123 4.123 16 C -0.177 4.177 17 C 0.108 3.892 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.141 4.141 21 N -0.413 5.413 22 Si 0.727 3.273 23 H -0.194 1.194 24 H -0.184 1.184 25 H -0.201 1.201 26 C -0.144 4.144 27 C -0.183 4.183 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.222 0.778 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.138 0.862 45 H 0.091 0.909 46 H 0.145 0.855 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.775 11.343 2.692 12.598 hybrid contribution -0.874 0.547 0.100 1.035 sum 3.901 11.889 2.791 12.820 Atomic orbital electron populations 1.22475 0.87281 1.02738 1.00238 1.61881 1.07888 1.13531 1.43022 1.22383 1.01049 0.88747 0.99991 1.22193 1.01144 0.92405 0.91409 1.22617 0.95316 0.94441 0.88412 1.86049 1.65378 1.23538 1.47222 1.18652 1.00356 0.82806 0.97348 1.19883 1.01250 0.95224 0.96603 1.20268 1.04993 0.92254 1.02295 1.17830 0.93980 0.84852 0.92773 1.41107 1.42929 1.04657 1.40551 1.17282 0.90392 0.98268 1.03269 1.20759 0.97341 0.96652 0.96014 1.20199 0.93857 1.04745 1.07386 1.20465 0.94456 0.98647 0.98743 1.21053 1.00287 0.96075 1.00330 1.17829 0.90138 0.90856 0.90397 1.19414 0.94133 1.20724 1.12176 0.90336 1.25907 0.97390 0.94630 0.96137 1.69844 1.09820 1.36243 1.25440 0.86366 0.78627 0.80008 0.82289 1.19384 1.18404 1.20057 1.20554 1.00839 0.95377 0.97655 1.20917 1.01888 0.93836 1.01610 0.95815 0.91294 0.91007 0.91238 0.91446 0.95971 0.92850 0.89909 0.92450 0.92278 0.86401 0.86492 0.77784 0.89317 0.89481 0.89530 0.86206 0.90885 0.85456 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.39 60.07 0.56 0.79 16 2 N -0.54 -6.33 4.88 -251.26 -1.23 -7.55 16 3 C 0.03 0.24 9.51 60.06 0.57 0.81 16 4 C 0.06 0.62 5.39 -3.83 -0.02 0.60 16 5 C 0.07 0.92 4.92 37.16 0.18 1.10 16 6 O -0.31 -5.14 10.07 -19.66 -0.20 -5.34 16 7 C 0.05 0.99 6.69 -39.21 -0.26 0.72 16 8 C -0.11 -1.95 9.98 -39.46 -0.39 -2.34 16 9 C -0.18 -3.15 9.89 -39.38 -0.39 -3.54 16 10 C 0.21 4.24 6.13 -83.71 -0.51 3.73 16 11 N -0.67 -13.67 4.70 -8.01 -0.04 -13.71 16 12 C 0.00 0.04 4.58 -83.29 -0.38 -0.34 16 13 C -0.09 -1.92 9.96 -39.41 -0.39 -2.31 16 14 C -0.24 -5.26 10.03 -39.37 -0.40 -5.66 16 15 C -0.10 -2.38 9.96 -39.98 -0.40 -2.78 16 16 C -0.16 -3.93 8.63 -39.29 -0.34 -4.27 16 17 C 0.11 2.82 5.08 -106.63 -0.54 2.28 16 18 C -0.44 -11.10 8.12 -37.91 -0.31 -11.40 16 19 H 0.08 2.02 7.59 -52.48 -0.40 1.62 16 20 C 0.08 1.90 5.17 -17.33 -0.09 1.81 16 21 N -0.79 -19.69 10.89 55.55 0.60 -19.08 16 22 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 26 C -0.12 -2.61 9.02 -39.38 -0.36 -2.96 16 27 C -0.16 -3.12 9.03 -39.46 -0.36 -3.47 16 28 H 0.02 0.22 8.09 -51.92 -0.42 -0.20 16 29 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.07 0.84 6.82 -51.93 -0.35 0.49 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.05 0.49 7.96 -51.93 -0.41 0.07 16 35 H 0.08 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.06 0.80 6.33 -51.93 -0.33 0.47 16 37 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.39 6.97 8.84 -40.82 -0.36 6.61 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.12 3.10 6.13 -52.49 -0.32 2.77 16 45 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 46 H 0.13 3.05 6.74 -52.49 -0.35 2.70 16 47 H 0.11 1.97 6.29 -52.49 -0.33 1.64 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -27.73 384.31 -10.94 -38.67 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.02 Total: 14.65 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -3.82 Total: -27.24 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: -0.66 Total: -40.35 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.73 -10.94 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176229426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.919 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds