Wall clock time and date at job start Tue Mar 31 2020 14:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99824 * 2 1 4 4 C 1.46892 * 111.00052 * 123.95715 * 2 1 3 5 5 C 1.53006 * 109.47162 * 75.70023 * 4 2 1 6 6 O 1.42898 * 109.47036 * 63.91372 * 5 4 2 7 7 C 1.35973 * 116.99839 * 180.02562 * 6 5 4 8 8 C 1.38746 * 119.97462 * 179.97438 * 7 6 5 9 9 C 1.38058 * 120.02074 * 179.97438 * 8 7 6 10 10 C 1.38949 * 119.97839 * 0.02562 * 9 8 7 11 11 N 1.39772 * 120.02371 * 179.97438 * 10 9 8 12 12 C 1.38632 * 119.99601 * 185.53729 * 11 10 9 13 13 C 1.38831 * 120.30169 * 255.55168 * 12 11 10 14 14 C 1.38099 * 120.02031 * 180.32182 * 13 12 11 15 15 C 1.38933 * 120.63669 * 359.67777 * 14 13 12 16 16 C 1.36423 * 120.61179 * 0.02562 * 15 14 13 17 17 C 1.40739 * 119.95234 * 359.97438 * 16 15 14 18 18 C 1.41002 * 120.31296 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00376 * 205.03524 * 18 17 16 20 20 C 1.39897 * 119.99732 * 25.02308 * 18 17 16 21 21 N 1.30896 * 119.99972 * 16.14732 * 20 18 17 22 22 Si 1.86806 * 120.00000 * 196.14217 * 20 18 17 23 23 H 1.48508 * 109.46641 * 265.02175 * 22 20 18 24 24 H 1.48502 * 109.47186 * 25.01815 * 22 20 18 25 25 H 1.48496 * 109.47283 * 145.02375 * 22 20 18 26 26 C 1.38949 * 119.95107 * 0.25003 * 10 9 8 27 27 C 1.38064 * 119.97427 * 359.51313 * 26 10 9 28 28 H 1.09007 * 109.47067 * 296.04310 * 1 2 3 29 29 H 1.08996 * 109.47205 * 56.04334 * 1 2 3 30 30 H 1.08994 * 109.47323 * 176.04217 * 1 2 3 31 31 H 1.09002 * 109.46790 * 188.04852 * 3 2 1 32 32 H 1.09002 * 109.47605 * 308.05072 * 3 2 1 33 33 H 1.08999 * 109.46899 * 68.05126 * 3 2 1 34 34 H 1.08999 * 109.47455 * 315.69790 * 4 2 1 35 35 H 1.08999 * 109.47194 * 195.69440 * 4 2 1 36 36 H 1.09000 * 109.46840 * 303.91180 * 5 4 2 37 37 H 1.09002 * 109.46678 * 183.91494 * 5 4 2 38 38 H 1.07999 * 119.98963 * 359.97438 * 8 7 6 39 39 H 1.08002 * 120.01210 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99976 * 5.53361 * 11 10 9 41 41 H 1.08000 * 119.98922 * 0.02654 * 13 12 11 42 42 H 1.07998 * 119.68072 * 179.70437 * 14 13 12 43 43 H 1.08004 * 119.69349 * 180.02562 * 15 14 13 44 44 H 1.07998 * 120.02320 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99697 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.01597 * 179.74604 * 26 10 9 47 47 H 1.07997 * 119.98870 * 180.25374 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8456 -2.2627 0.8575 6 8 2.6479 -2.6191 -0.2700 7 6 2.6277 -3.9232 -0.6545 8 6 3.3834 -4.3370 -1.7421 9 6 3.3640 -5.6609 -2.1330 10 6 2.5870 -6.5790 -1.4373 11 7 2.5662 -7.9195 -1.8325 12 6 1.7050 -8.8116 -1.2126 13 6 2.1907 -9.7268 -0.2885 14 6 1.3287 -10.6173 0.3206 15 6 -0.0284 -10.6047 0.0236 16 6 -0.5345 -9.7125 -0.8759 17 6 0.3213 -8.7936 -1.5116 18 6 -0.1937 -7.8678 -2.4420 19 1 0.4484 -7.4571 -3.2073 20 6 -1.5365 -7.4813 -2.3742 21 7 -2.2309 -7.7153 -1.2896 22 14 -2.3385 -6.6310 -3.8315 23 1 -2.2728 -5.1594 -3.6434 24 1 -1.6217 -7.0032 -5.0777 25 1 -3.7583 -7.0544 -3.9317 26 6 1.8261 -6.1623 -0.3518 27 6 1.8507 -4.8388 0.0404 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0756 1.3459 -0.1439 32 1 1.5343 1.9377 -0.8092 33 1 1.7670 1.8482 0.9532 34 1 1.4391 -0.5074 2.0384 35 1 3.0493 -0.5268 1.2800 36 1 0.8007 -2.4900 0.6464 37 1 2.1718 -2.8298 1.7294 38 1 3.9870 -3.6232 -2.2829 39 1 3.9520 -5.9828 -2.9798 40 1 3.1543 -8.2255 -2.5406 41 1 3.2438 -9.7455 -0.0496 42 1 1.7132 -11.3301 1.0351 43 1 -0.6890 -11.3078 0.5093 44 1 -1.5911 -9.7108 -1.0993 45 1 -3.1621 -7.4476 -1.2427 46 1 1.2185 -6.8742 0.1872 47 1 1.2626 -4.5155 0.8866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176229426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:52 Heat of formation + Delta-G solvation = 8.164715 kcal Electronic energy + Delta-G solvation = -27264.705727 eV Core-core repulsion = 23604.944055 eV Total energy + Delta-G solvation = -3659.761671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99801 -39.94124 -38.70300 -37.72254 -35.60952 -35.30047 -31.89755 -31.52239 -31.32945 -30.30558 -28.49771 -28.29576 -26.82741 -25.47756 -23.71841 -23.01279 -22.80336 -21.67431 -21.50077 -19.16821 -19.01633 -18.01692 -17.75523 -17.22813 -16.92705 -16.35190 -16.04046 -15.88580 -15.61945 -15.52625 -15.45693 -15.02612 -14.57182 -14.37020 -14.18937 -13.88901 -13.61334 -13.48963 -13.39941 -13.28410 -13.10798 -12.92698 -12.82902 -12.70627 -12.62762 -12.59343 -12.20014 -12.17353 -11.96555 -11.59727 -11.48513 -11.37553 -11.04859 -10.28983 -9.76851 -9.30593 -9.26716 -9.22803 -8.63837 -7.76133 -6.28163 0.58596 0.83735 0.99228 1.12519 1.34424 1.44391 1.50680 2.18163 2.48056 2.75135 2.99196 2.99787 3.13803 3.74358 3.93280 4.05736 4.10415 4.15807 4.27261 4.40911 4.42765 4.47599 4.48597 4.58034 4.61897 4.64256 4.69517 4.74832 4.79143 4.84334 4.92238 5.00867 5.03115 5.16470 5.18442 5.31630 5.34636 5.47440 5.59156 5.64192 5.70072 5.86389 5.96429 6.06668 6.09589 6.10714 6.21261 6.38890 6.58099 6.72265 6.90546 6.95059 7.10478 7.38377 8.31913 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003654 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.450195 B = 7660.051473 C = 8834.350292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.566 5.566 3 C 0.028 3.972 4 C 0.061 3.939 5 C 0.061 3.939 6 O -0.313 6.313 7 C 0.056 3.944 8 C -0.111 4.111 9 C -0.165 4.165 10 C 0.191 3.809 11 N -0.670 5.670 12 C 0.008 3.992 13 C -0.096 4.096 14 C -0.237 4.237 15 C -0.110 4.110 16 C -0.184 4.184 17 C 0.086 3.914 18 C -0.459 4.459 19 H 0.068 0.932 20 C 0.041 3.959 21 N -0.818 5.818 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.260 1.260 25 H -0.264 1.264 26 C -0.146 4.146 27 C -0.170 4.170 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.399 0.601 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.285 0.715 46 H 0.091 0.909 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 12.850 2.911 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.290 5.290 3 C -0.120 4.120 4 C -0.066 4.066 5 C -0.014 4.014 6 O -0.227 6.227 7 C 0.010 3.990 8 C -0.130 4.130 9 C -0.188 4.188 10 C 0.089 3.911 11 N -0.295 5.295 12 C -0.086 4.086 13 C -0.116 4.116 14 C -0.257 4.257 15 C -0.129 4.129 16 C -0.204 4.204 17 C 0.082 3.918 18 C -0.489 4.489 19 H 0.086 0.914 20 C -0.174 4.174 21 N -0.444 5.444 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.183 1.183 25 H -0.188 1.188 26 C -0.168 4.168 27 C -0.189 4.189 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.236 0.764 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.131 12.747 2.602 14.382 hybrid contribution -1.191 0.149 0.233 1.223 sum 4.940 12.896 2.835 14.097 Atomic orbital electron populations 1.22441 0.87056 1.01822 1.01271 1.61855 1.08401 1.15110 1.43675 1.22399 1.01070 0.87542 1.00961 1.22187 1.01989 0.90410 0.92051 1.22882 0.94355 0.96544 0.87664 1.86054 1.65873 1.22369 1.48436 1.18801 0.99658 0.83341 0.97176 1.20253 1.00884 0.95567 0.96267 1.20571 1.03986 0.91895 1.02306 1.17977 0.94889 0.85138 0.93133 1.41019 1.42854 1.04575 1.41060 1.17424 0.90052 0.98271 1.02858 1.21064 0.98640 0.96332 0.95536 1.20576 0.93341 1.04679 1.07061 1.20727 0.95522 0.98456 0.98165 1.21042 0.99718 0.97534 1.02078 1.18123 0.91470 0.91205 0.90991 1.19436 0.94902 1.21807 1.12722 0.91390 1.26560 0.97560 0.95122 0.98181 1.69893 1.10272 1.37474 1.26761 0.85470 0.78208 0.78618 0.79230 1.19613 1.18349 1.18808 1.20366 1.01912 0.95741 0.98831 1.20993 1.02414 0.93260 1.02233 0.94307 0.90808 0.92811 0.91071 0.90932 0.94614 0.90714 0.89130 0.93455 0.91242 0.83819 0.83603 0.76428 0.87073 0.86499 0.87418 0.87959 0.90392 0.89061 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.39 127.69 1.20 1.64 16 2 N -0.57 -12.26 4.88 -948.86 -4.63 -16.90 16 3 C 0.03 0.45 9.51 127.69 1.21 1.66 16 4 C 0.06 1.22 5.39 86.31 0.46 1.69 16 5 C 0.06 1.58 4.92 71.98 0.35 1.93 16 6 O -0.31 -10.04 10.07 -93.25 -0.94 -10.98 16 7 C 0.06 2.00 6.69 22.51 0.15 2.15 16 8 C -0.11 -3.68 9.98 22.35 0.22 -3.46 16 9 C -0.17 -5.65 9.89 22.40 0.22 -5.43 16 10 C 0.19 7.75 6.13 38.22 0.23 7.98 16 11 N -0.67 -27.34 4.70 -179.27 -0.84 -28.18 16 12 C 0.01 0.39 4.58 39.03 0.18 0.57 16 13 C -0.10 -4.12 9.96 22.38 0.22 -3.90 16 14 C -0.24 -10.02 10.03 22.40 0.22 -9.79 16 15 C -0.11 -5.02 9.96 22.01 0.22 -4.80 16 16 C -0.18 -9.47 8.63 22.46 0.19 -9.28 16 17 C 0.09 4.48 5.08 -21.17 -0.11 4.37 16 18 C -0.46 -24.23 8.12 23.35 0.19 -24.04 16 19 H 0.07 3.61 7.59 -2.91 -0.02 3.58 16 20 C 0.04 2.07 5.17 85.23 0.44 2.51 16 21 N -0.82 -42.43 10.89 21.82 0.24 -42.19 16 22 Si 0.96 39.44 29.59 68.60 2.03 41.46 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 26 C -0.15 -6.41 9.02 22.40 0.20 -6.21 16 27 C -0.17 -6.56 9.03 22.35 0.20 -6.36 16 28 H 0.04 0.64 8.09 -2.38 -0.02 0.62 16 29 H 0.07 1.36 8.07 -2.39 -0.02 1.34 16 30 H 0.05 1.24 6.82 -2.39 -0.02 1.23 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 33 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 35 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.05 1.31 6.33 -2.39 -0.02 1.30 16 37 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 38 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.40 14.07 8.84 -92.71 -0.82 13.25 16 41 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 43 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 44 H 0.10 5.55 6.13 -2.91 -0.02 5.53 16 45 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 46 H 0.09 4.63 6.74 -2.91 -0.02 4.61 16 47 H 0.12 4.35 6.29 -2.91 -0.02 4.33 16 Total: -1.00 -60.92 384.31 2.04 -58.88 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: 0.15 Total: 46.66 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 6.03 Total: -48.76 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -5.24 Total: -87.27 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.94 Total: -10.98 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Total: -60.92 2.04 -58.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176229426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.049 kcal (2) G-P(sol) polarization free energy of solvation -60.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds