Wall clock time and date at job start Tue Mar 31 2020 14:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96816 * 2 1 4 4 N 1.39914 * 109.02175 * 179.76344 * 3 2 1 5 5 C 1.46497 * 125.74340 * 180.29096 * 4 3 2 6 6 C 1.34418 * 108.51415 * 0.42762 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.84193 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.58522 * 6 4 3 9 9 C 1.47168 * 126.45996 * 180.28527 * 8 6 4 10 10 O 1.21635 * 120.00163 * 89.96748 * 9 8 6 11 11 N 1.34782 * 119.99622 * 269.97267 * 9 8 6 12 12 C 1.46494 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47562 * 325.00177 * 12 11 9 14 14 C 1.53003 * 109.47120 * 85.00090 * 12 11 9 15 15 C 1.53002 * 109.47218 * 205.00081 * 12 11 9 16 16 C 1.53001 * 109.47267 * 65.00227 * 15 12 11 17 17 C 1.52997 * 109.46994 * 180.02562 * 16 15 12 18 18 C 1.53000 * 109.46662 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.36942 * 120.00103 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99901 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99955 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00124 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47366 * 90.00325 * 24 22 20 26 26 H 1.48502 * 109.46926 * 209.99936 * 24 22 20 27 27 H 1.48491 * 109.47045 * 329.99869 * 24 22 20 28 28 H 1.08999 * 109.47298 * 269.97598 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97605 * 1 2 3 30 30 H 1.08997 * 109.47088 * 149.97870 * 1 2 3 31 31 H 1.09000 * 109.47586 * 270.16272 * 5 4 3 32 32 H 1.09000 * 109.47130 * 30.16179 * 5 4 3 33 33 H 1.08999 * 109.47137 * 150.15793 * 5 4 3 34 34 H 0.96999 * 120.00161 * 0.02562 * 11 9 8 35 35 H 1.09006 * 109.46867 * 300.00146 * 14 12 11 36 36 H 1.09005 * 109.46832 * 59.99640 * 14 12 11 37 37 H 1.09002 * 109.47237 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47258 * 185.00259 * 15 12 11 39 39 H 1.08997 * 109.47102 * 305.00009 * 15 12 11 40 40 H 1.08997 * 109.47007 * 300.00185 * 16 15 12 41 41 H 1.09007 * 109.46731 * 59.99973 * 16 15 12 42 42 H 1.08997 * 109.46769 * 299.99601 * 17 16 15 43 43 H 1.09000 * 109.47232 * 60.00282 * 17 16 15 44 44 H 1.09007 * 109.47134 * 299.99793 * 18 17 16 45 45 H 1.08997 * 109.47553 * 59.99682 * 18 17 16 46 46 H 0.96994 * 120.00006 * 359.97438 * 19 18 17 47 47 H 0.96999 * 119.99634 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 0.0055 5 6 4.7762 1.5353 0.0132 6 6 3.6479 -0.6963 -0.0007 7 9 4.7577 -1.4669 -0.0012 8 6 2.3374 -1.1445 -0.0004 9 6 1.8929 -2.5475 -0.0001 10 8 1.7099 -3.1272 1.0534 11 7 1.6888 -3.1899 -1.1673 12 6 1.2469 -4.5866 -1.1670 13 1 1.6999 -5.1109 -0.3255 14 6 -0.2770 -4.6394 -1.0401 15 6 1.6733 -5.2567 -2.4747 16 6 3.2006 -5.3155 -2.5433 17 6 3.6269 -5.9850 -3.8512 18 6 5.1543 -6.0444 -3.9195 19 7 5.5626 -6.6849 -5.1722 20 6 6.8922 -6.8502 -5.4550 21 1 7.6398 -6.5080 -4.7548 22 6 7.2790 -7.4576 -6.6417 23 7 8.5571 -7.6160 -6.9138 24 14 5.9859 -8.0502 -7.8525 25 1 5.6633 -6.9585 -8.8061 26 1 6.5080 -9.2222 -8.6002 27 1 4.7584 -8.4410 -7.1139 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0685 1.7604 -1.0124 32 1 4.5242 2.4610 0.5306 33 1 5.6031 1.0453 0.5274 34 1 1.8352 -2.7277 -2.0074 35 1 -0.5807 -4.1619 -0.1084 36 1 -0.7299 -4.1150 -1.8816 37 1 -0.6057 -5.6786 -1.0394 38 1 1.2687 -6.2681 -2.5134 39 1 1.2936 -4.6809 -3.3186 40 1 3.6052 -4.3041 -2.5045 41 1 3.5803 -5.8914 -1.6992 42 1 3.2223 -6.9964 -3.8904 43 1 3.2473 -5.4088 -4.6950 44 1 5.5593 -5.0331 -3.8801 45 1 5.5336 -6.6207 -3.0758 46 1 4.8911 -6.9926 -5.8009 47 1 8.8273 -8.0402 -7.7433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176374683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:23 Heat of formation + Delta-G solvation = -6.786799 kcal Electronic energy + Delta-G solvation = -27478.938500 eV Core-core repulsion = 23420.052009 eV Total energy + Delta-G solvation = -4058.886491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.64583 -41.78195 -39.71927 -36.99349 -35.39912 -34.61908 -33.27682 -31.80842 -30.90620 -30.38068 -29.70566 -27.75658 -26.54512 -24.33212 -23.24945 -21.80464 -21.19899 -20.92293 -20.78929 -20.48361 -18.38055 -17.49803 -17.35283 -17.04932 -16.54465 -16.37514 -15.16906 -15.07837 -14.86412 -14.75634 -14.51861 -14.13775 -14.03856 -13.94273 -13.72165 -13.56584 -13.23857 -13.10089 -13.01996 -12.85386 -12.69831 -12.55418 -12.42025 -11.90678 -11.65948 -11.45501 -11.32675 -11.14321 -10.86879 -10.83259 -10.40085 -10.33493 -10.18476 -10.08487 -9.77370 -9.57303 -9.26205 -9.14212 -8.87189 -7.20377 -5.75066 -3.10160 0.96756 1.49709 1.84217 2.29846 3.03999 3.38201 3.40912 3.43224 3.45762 3.92419 4.34053 4.46548 4.60659 4.60792 4.66203 4.68069 4.83773 4.88172 4.89992 4.94005 5.16434 5.20991 5.27432 5.32871 5.37032 5.39066 5.50497 5.57388 5.59360 5.68012 5.83492 5.88099 5.90688 6.04879 6.08916 6.16495 6.20403 6.25184 6.34986 6.38961 6.79960 6.83687 6.93675 7.29033 8.00708 8.02251 8.44404 9.23979 9.96458 10.16889 11.43586 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002526 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.744866 B =11080.867898 C =12522.323160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.271 5.271 4 N -0.373 5.373 5 C 0.091 3.909 6 C 0.299 3.701 7 F -0.084 7.084 8 C -0.295 4.295 9 C 0.602 3.398 10 O -0.529 6.529 11 N -0.712 5.712 12 C 0.139 3.861 13 H 0.090 0.910 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.156 3.844 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.089 0.911 22 C 0.001 3.999 23 N -0.936 5.936 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.402 0.598 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 18.544 15.328 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.094 5.094 4 N -0.157 5.157 5 C -0.050 4.050 6 C 0.151 3.849 7 F -0.063 7.063 8 C -0.311 4.311 9 C 0.386 3.614 10 O -0.405 6.405 11 N -0.363 5.363 12 C 0.035 3.965 13 H 0.108 0.892 14 C -0.221 4.221 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.404 5.404 20 C -0.373 4.373 21 H 0.107 0.893 22 C -0.194 4.194 23 N -0.584 5.584 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.683 19.437 16.118 31.410 hybrid contribution -0.084 -1.182 -1.403 1.836 sum -18.767 18.255 14.715 30.033 Atomic orbital electron populations 1.20316 0.85185 1.04059 1.04061 1.22182 0.97159 0.87979 0.96168 1.77317 0.84182 1.21179 1.26723 1.48703 1.07337 1.02690 1.57008 1.22124 0.83544 0.94629 1.04659 1.17832 0.83459 0.81885 1.01675 1.91711 1.49540 1.71408 1.93620 1.19660 0.90370 0.95620 1.25483 1.16988 0.76625 0.83916 0.83920 1.90807 1.50979 1.67327 1.31361 1.46118 1.68420 1.13462 1.08309 1.21095 0.94634 0.81152 0.99574 0.89155 1.22181 0.95235 1.02476 1.02236 1.21939 0.97047 1.01433 0.96049 1.21520 0.94241 1.01235 0.98339 1.21774 0.97510 1.00564 0.96861 1.20630 0.91320 0.95957 0.89182 1.42743 1.04840 1.72823 1.19972 1.19092 0.82453 1.32556 1.03213 0.89297 1.24691 0.95726 1.01038 0.97942 1.69710 1.13601 1.49352 1.25753 0.86508 0.81562 0.78474 0.81776 1.21115 1.21725 1.20325 0.89446 0.89830 0.89940 0.89506 0.88064 0.88792 0.76338 0.92111 0.92405 0.91460 0.90132 0.91321 0.91987 0.91721 0.92080 0.92194 0.95795 0.95718 0.80742 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.28 36.00 0.37 -0.12 16 2 C 0.13 1.26 7.26 -82.01 -0.60 0.66 16 3 N -0.27 -2.73 12.49 33.91 0.42 -2.31 16 4 N -0.37 -3.46 3.98 -67.94 -0.27 -3.73 16 5 C 0.09 0.46 11.43 59.85 0.68 1.14 16 6 C 0.30 3.23 8.70 -16.32 -0.14 3.09 16 7 F -0.08 -0.95 17.31 2.25 0.04 -0.91 16 8 C -0.30 -3.23 5.89 -104.97 -0.62 -3.85 16 9 C 0.60 7.11 7.32 -12.63 -0.09 7.02 16 10 O -0.53 -8.10 16.77 5.25 0.09 -8.01 16 11 N -0.71 -6.69 4.53 -54.96 -0.25 -6.94 16 12 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 13 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 14 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 15 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 16 C -0.12 -1.36 5.10 -26.73 -0.14 -1.49 16 17 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 18 C 0.16 3.10 6.26 -4.04 -0.03 3.07 16 19 N -0.76 -18.66 5.41 -59.91 -0.32 -18.98 16 20 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 21 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 22 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 23 N -0.94 -29.93 13.97 55.49 0.78 -29.16 16 24 Si 0.89 22.42 27.74 -169.99 -4.71 17.71 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.46 8.01 -51.93 -0.42 0.05 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 3.13 8.59 -40.82 -0.35 2.78 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 41 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.55 5.53 -40.82 -0.23 8.33 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -36.51 399.22 -6.84 -43.35 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.72 Total: 3.90 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.90 Total: -0.94 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.36 Total: -61.11 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.51 -6.84 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176374683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.565 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds