Wall clock time and date at job start Tue Mar 31 2020 14:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30373 * 125.96816 * 2 1 4 4 N 1.39914 * 109.02175 * 179.76344 * 3 2 1 5 5 C 1.46497 * 125.74340 * 180.29096 * 4 3 2 6 6 C 1.34418 * 108.51415 * 0.42762 * 4 3 2 7 7 F 1.35104 * 126.34255 * 179.84193 * 6 4 3 8 8 C 1.38501 * 107.31182 * 359.58522 * 6 4 3 9 9 C 1.47168 * 126.45996 * 180.28527 * 8 6 4 10 10 O 1.21635 * 120.00163 * 89.96748 * 9 8 6 11 11 N 1.34782 * 119.99622 * 269.97267 * 9 8 6 12 12 C 1.46494 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.47562 * 325.00177 * 12 11 9 14 14 C 1.53003 * 109.47120 * 85.00090 * 12 11 9 15 15 C 1.53002 * 109.47218 * 205.00081 * 12 11 9 16 16 C 1.53001 * 109.47267 * 65.00227 * 15 12 11 17 17 C 1.52997 * 109.46994 * 180.02562 * 16 15 12 18 18 C 1.53000 * 109.46662 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.46999 * 180.02562 * 18 17 16 20 20 C 1.36942 * 120.00103 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99901 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99955 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00124 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47366 * 90.00325 * 24 22 20 26 26 H 1.48502 * 109.46926 * 209.99936 * 24 22 20 27 27 H 1.48491 * 109.47045 * 329.99869 * 24 22 20 28 28 H 1.08999 * 109.47298 * 269.97598 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97605 * 1 2 3 30 30 H 1.08997 * 109.47088 * 149.97870 * 1 2 3 31 31 H 1.09000 * 109.47586 * 270.16272 * 5 4 3 32 32 H 1.09000 * 109.47130 * 30.16179 * 5 4 3 33 33 H 1.08999 * 109.47137 * 150.15793 * 5 4 3 34 34 H 0.96999 * 120.00161 * 0.02562 * 11 9 8 35 35 H 1.09006 * 109.46867 * 300.00146 * 14 12 11 36 36 H 1.09005 * 109.46832 * 59.99640 * 14 12 11 37 37 H 1.09002 * 109.47237 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47258 * 185.00259 * 15 12 11 39 39 H 1.08997 * 109.47102 * 305.00009 * 15 12 11 40 40 H 1.08997 * 109.47007 * 300.00185 * 16 15 12 41 41 H 1.09007 * 109.46731 * 59.99973 * 16 15 12 42 42 H 1.08997 * 109.46769 * 299.99601 * 17 16 15 43 43 H 1.09000 * 109.47232 * 60.00282 * 17 16 15 44 44 H 1.09007 * 109.47134 * 299.99793 * 18 17 16 45 45 H 1.08997 * 109.47553 * 59.99682 * 18 17 16 46 46 H 0.96994 * 120.00006 * 359.97438 * 19 18 17 47 47 H 0.96999 * 119.99634 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 0.0055 5 6 4.7762 1.5353 0.0132 6 6 3.6479 -0.6963 -0.0007 7 9 4.7577 -1.4669 -0.0012 8 6 2.3374 -1.1445 -0.0004 9 6 1.8929 -2.5475 -0.0001 10 8 1.7099 -3.1272 1.0534 11 7 1.6888 -3.1899 -1.1673 12 6 1.2469 -4.5866 -1.1670 13 1 1.6999 -5.1109 -0.3255 14 6 -0.2770 -4.6394 -1.0401 15 6 1.6733 -5.2567 -2.4747 16 6 3.2006 -5.3155 -2.5433 17 6 3.6269 -5.9850 -3.8512 18 6 5.1543 -6.0444 -3.9195 19 7 5.5626 -6.6849 -5.1722 20 6 6.8922 -6.8502 -5.4550 21 1 7.6398 -6.5080 -4.7548 22 6 7.2790 -7.4576 -6.6417 23 7 8.5571 -7.6160 -6.9138 24 14 5.9859 -8.0502 -7.8525 25 1 5.6633 -6.9585 -8.8061 26 1 6.5080 -9.2222 -8.6002 27 1 4.7584 -8.4410 -7.1139 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0685 1.7604 -1.0124 32 1 4.5242 2.4610 0.5306 33 1 5.6031 1.0453 0.5274 34 1 1.8352 -2.7277 -2.0074 35 1 -0.5807 -4.1619 -0.1084 36 1 -0.7299 -4.1150 -1.8816 37 1 -0.6057 -5.6786 -1.0394 38 1 1.2687 -6.2681 -2.5134 39 1 1.2936 -4.6809 -3.3186 40 1 3.6052 -4.3041 -2.5045 41 1 3.5803 -5.8914 -1.6992 42 1 3.2223 -6.9964 -3.8904 43 1 3.2473 -5.4088 -4.6950 44 1 5.5593 -5.0331 -3.8801 45 1 5.5336 -6.6207 -3.0758 46 1 4.8911 -6.9926 -5.8009 47 1 8.8273 -8.0402 -7.7433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176374683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:22 Heat of formation + Delta-G solvation = -32.228359 kcal Electronic energy + Delta-G solvation = -27480.041729 eV Core-core repulsion = 23420.052009 eV Total energy + Delta-G solvation = -4059.989720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.49142 -42.51635 -40.59452 -38.06650 -36.92433 -35.25697 -34.76949 -33.27535 -32.21309 -31.11795 -30.36370 -29.03733 -27.14231 -25.79841 -24.21447 -23.30433 -22.20950 -21.98892 -21.65824 -21.27613 -19.63826 -19.12725 -18.13845 -17.83048 -17.37584 -17.15136 -16.64232 -16.31308 -15.88111 -15.78997 -15.65466 -15.48480 -14.89234 -14.71451 -14.62427 -14.49913 -14.36537 -14.15223 -14.12135 -13.72168 -13.51893 -13.29788 -13.10353 -13.02102 -12.95856 -12.90961 -12.44206 -12.31923 -12.09973 -12.01193 -11.89171 -11.77973 -11.51451 -11.43139 -11.10865 -10.98459 -10.45889 -10.10635 -9.91501 -9.32707 -8.05196 -5.39719 0.19011 0.84788 1.11386 1.37163 1.40484 1.42029 1.49753 2.25074 2.47620 2.72557 3.25754 3.26661 3.48999 3.72135 3.84319 3.95014 4.06002 4.08778 4.11581 4.20658 4.26697 4.36194 4.41522 4.55632 4.58861 4.65444 4.71395 4.75383 4.79536 4.87357 4.88445 4.94291 4.99430 5.03582 5.13362 5.26228 5.30222 5.38461 5.41921 5.50246 5.57055 5.58444 5.72415 6.19156 6.22321 6.49145 7.05737 7.16285 7.81565 8.02628 9.16553 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002526 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.744866 B =11080.867898 C =12522.323160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.131 3.869 3 N -0.283 5.283 4 N -0.370 5.370 5 C 0.080 3.920 6 C 0.285 3.715 7 F -0.092 7.092 8 C -0.311 4.311 9 C 0.604 3.396 10 O -0.571 6.571 11 N -0.699 5.699 12 C 0.140 3.860 13 H 0.068 0.932 14 C -0.156 4.156 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.115 4.115 18 C 0.150 3.850 19 N -0.760 5.760 20 C -0.243 4.243 21 H 0.050 0.950 22 C -0.068 4.068 23 N -0.986 5.986 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.248 1.248 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.412 0.588 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.018 0.982 45 H 0.015 0.985 46 H 0.368 0.632 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.055 19.089 14.278 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.106 5.106 4 N -0.154 5.154 5 C -0.059 4.059 6 C 0.136 3.864 7 F -0.071 7.071 8 C -0.327 4.327 9 C 0.389 3.611 10 O -0.450 6.450 11 N -0.350 5.350 12 C 0.036 3.964 13 H 0.086 0.914 14 C -0.215 4.215 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.153 4.153 18 C 0.024 3.976 19 N -0.406 5.406 20 C -0.374 4.374 21 H 0.068 0.932 22 C -0.259 4.259 23 N -0.636 5.636 24 Si 0.789 3.211 25 H -0.200 1.200 26 H -0.221 1.221 27 H -0.173 1.173 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.201 0.799 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.741 20.019 15.071 33.175 hybrid contribution 0.980 -1.284 -0.993 1.896 sum -20.761 18.735 14.078 31.308 Atomic orbital electron populations 1.20452 0.83119 1.05236 1.04748 1.22635 0.98430 0.87151 0.95306 1.77288 0.84612 1.21534 1.27198 1.49029 1.07992 1.02475 1.55907 1.22485 0.82664 0.94757 1.05969 1.17969 0.83291 0.82675 1.02449 1.91683 1.49891 1.71756 1.93780 1.19750 0.90877 0.95619 1.26481 1.17120 0.76021 0.84182 0.83826 1.90782 1.53102 1.68310 1.32851 1.46073 1.67268 1.13533 1.08124 1.21100 0.95682 0.80643 0.98978 0.91421 1.22118 0.93768 1.03362 1.02208 1.21856 0.94594 1.02515 0.96348 1.21452 0.96471 1.00529 0.96339 1.21658 0.93221 1.01611 0.98818 1.20844 0.95201 0.94754 0.86832 1.42745 1.03081 1.73120 1.21668 1.19063 0.84021 1.31799 1.02502 0.93171 1.25634 0.98274 1.01673 1.00313 1.69908 1.16329 1.50769 1.26581 0.85288 0.79230 0.77726 0.78816 1.20035 1.22095 1.17259 0.88917 0.88182 0.89192 0.88177 0.86504 0.87732 0.75159 0.93515 0.90705 0.90323 0.88871 0.89393 0.92233 0.92713 0.91396 0.90958 0.96400 0.96734 0.79862 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.28 71.24 0.73 -0.12 16 2 C 0.13 2.39 7.26 43.55 0.32 2.70 16 3 N -0.28 -5.43 12.49 -46.64 -0.58 -6.01 16 4 N -0.37 -6.60 3.98 -368.86 -1.47 -8.07 16 5 C 0.08 0.72 11.43 127.77 1.46 2.18 16 6 C 0.28 6.14 8.70 84.36 0.73 6.87 16 7 F -0.09 -2.12 17.31 44.97 0.78 -1.34 16 8 C -0.31 -6.73 5.89 -20.09 -0.12 -6.85 16 9 C 0.60 14.19 7.32 86.59 0.63 14.82 16 10 O -0.57 -17.87 16.77 -4.14 -0.07 -17.94 16 11 N -0.70 -12.29 4.53 -446.04 -2.02 -14.31 16 12 C 0.14 2.36 2.57 44.99 0.12 2.47 16 13 H 0.07 1.49 7.58 -2.38 -0.02 1.47 16 14 C -0.16 -2.11 9.48 71.98 0.68 -1.42 16 15 C -0.12 -1.73 4.75 30.60 0.15 -1.58 16 16 C -0.11 -2.37 5.10 30.59 0.16 -2.21 16 17 C -0.12 -3.12 5.33 30.59 0.16 -2.96 16 18 C 0.15 5.83 6.26 86.38 0.54 6.37 16 19 N -0.76 -36.62 5.41 -343.45 -1.86 -38.47 16 20 C -0.24 -14.41 10.47 84.03 0.88 -13.53 16 21 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 23 N -0.99 -64.38 13.97 21.65 0.30 -64.08 16 24 Si 0.96 45.60 27.74 68.60 1.90 47.50 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.85 8.01 -2.39 -0.02 0.83 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.41 5.65 8.59 -92.71 -0.80 4.85 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 41 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.37 16.46 5.53 -92.71 -0.51 15.95 16 47 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -80.78 399.22 3.51 -77.27 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.39 Total: 22.31 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.91 Total: 3.14 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.63 Total: -130.95 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.07 Total: -17.94 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Total: -80.78 3.51 -77.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176374683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.044 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds