Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86808 * 119.99800 * 2 1 4 4 H 1.48504 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46892 * 300.00082 * 3 2 1 6 6 H 1.48497 * 109.47052 * 60.00100 * 3 2 1 7 7 C 1.39825 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00439 * 192.90954 * 7 2 1 9 9 C 1.41095 * 119.99695 * 12.91854 * 7 2 1 10 10 C 1.40908 * 120.14811 * 208.02881 * 9 7 2 11 11 C 1.36288 * 119.84541 * 179.74910 * 10 9 7 12 12 C 1.39651 * 120.14952 * 0.24700 * 11 10 9 13 13 N 1.38677 * 119.84520 * 179.97438 * 12 11 10 14 14 C 1.40505 * 119.99943 * 31.50123 * 13 12 11 15 15 C 1.40311 * 126.09171 * 16.35139 * 14 13 12 16 16 N 1.30817 * 108.33985 * 179.97438 * 15 14 13 17 17 N 1.40066 * 108.40040 * 359.97438 * 16 15 14 18 18 C 1.46492 * 126.05092 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47589 * 304.97899 * 18 17 16 20 20 N 1.46898 * 109.47199 * 179.97438 * 19 18 17 21 21 C 1.48528 * 110.99933 * 52.60599 * 20 19 18 22 22 C 1.54941 * 103.22785 * 159.72026 * 21 20 19 23 23 C 1.54599 * 102.91778 * 322.58312 * 22 21 20 24 24 C 1.47908 * 110.99372 * 169.99913 * 20 19 18 25 25 C 1.35853 * 107.89931 * 359.73967 * 17 16 15 26 26 C 1.39647 * 120.30761 * 0.03010 * 12 11 10 27 27 C 1.36294 * 120.15146 * 359.94869 * 26 12 11 28 28 H 0.96996 * 120.00212 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.07589 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.92416 * 180.27758 * 11 10 9 31 31 H 0.96999 * 119.99876 * 211.50030 * 13 12 11 32 32 H 1.08004 * 125.82900 * 359.95630 * 15 14 13 33 33 H 1.09004 * 109.46846 * 64.97891 * 18 17 16 34 34 H 1.09000 * 109.47438 * 184.97207 * 18 17 16 35 35 H 1.08997 * 109.46649 * 299.99920 * 19 18 17 36 36 H 1.08999 * 109.46802 * 59.99410 * 19 18 17 37 37 H 1.09003 * 110.66692 * 278.15160 * 21 20 19 38 38 H 1.08999 * 110.67421 * 41.27849 * 21 20 19 39 39 H 1.08999 * 110.72427 * 204.22496 * 22 21 20 40 40 H 1.08996 * 110.72274 * 80.93654 * 22 21 20 41 41 H 1.08996 * 110.30846 * 263.03977 * 23 22 21 42 42 H 1.08994 * 110.30802 * 140.87500 * 23 22 21 43 43 H 1.08992 * 109.91778 * 333.50459 * 24 20 19 44 44 H 1.08995 * 109.91789 * 94.60797 * 24 20 19 45 45 H 1.07997 * 126.22728 * 180.26936 * 25 17 16 46 46 H 1.07997 * 119.92605 * 179.97438 * 26 12 11 47 47 H 1.07995 * 120.07593 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.7033 1.3465 -0.0006 5 1 1.8844 2.3965 -1.2125 6 1 1.8845 2.3965 1.2125 7 6 2.0085 -1.2109 0.0005 8 1 3.0680 -1.2226 0.2095 9 6 1.3298 -2.4175 -0.2721 10 6 1.7982 -3.6309 0.2697 11 6 1.1349 -4.7921 0.0065 12 6 -0.0035 -4.7817 -0.8023 13 7 -0.6733 -5.9669 -1.0664 14 6 -0.6889 -6.9938 -0.1075 15 6 -0.3646 -6.8609 1.2512 16 7 -0.4962 -8.0305 1.8221 17 7 -0.9092 -8.9522 0.8517 18 6 -1.1724 -10.3764 1.0719 19 6 0.0588 -11.0312 1.7016 20 7 -0.2054 -12.4592 1.9230 21 6 -0.6813 -13.1119 0.6766 22 6 -0.3996 -14.6138 0.9331 23 6 0.9418 -14.5875 1.7012 24 6 1.0318 -13.1739 2.3054 25 6 -1.0277 -8.2906 -0.3290 26 6 -0.4699 -3.5835 -1.3472 27 6 0.1835 -2.4151 -1.0918 28 1 -0.4850 0.8400 0.0004 29 1 2.6782 -3.6402 0.8958 30 1 1.4901 -5.7222 0.4248 31 1 -1.1310 -6.0871 -1.9131 32 1 -0.0583 -5.9488 1.7418 33 1 -2.0258 -10.4890 1.7407 34 1 -1.3921 -10.8570 0.1186 35 1 0.9121 -10.9186 1.0328 36 1 0.2784 -10.5505 2.6549 37 1 -1.7483 -12.9394 0.5353 38 1 -0.1157 -12.7559 -0.1844 39 1 -0.2944 -15.1528 -0.0084 40 1 -1.1861 -15.0546 1.5455 41 1 1.7728 -14.7602 1.0174 42 1 0.9396 -15.3375 2.4921 43 1 1.9008 -12.6530 1.9037 44 1 1.1048 -13.2349 3.3912 45 1 -1.3326 -8.7184 -1.2725 46 1 -1.3507 -3.5827 -1.9722 47 1 -0.1784 -1.4891 -1.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176559656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = 112.741155 kcal Electronic energy + Delta-G solvation = -26025.565769 eV Core-core repulsion = 22402.631623 eV Total energy + Delta-G solvation = -3622.934146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86187 -39.31869 -37.91545 -35.28459 -34.14845 -32.90227 -31.51062 -29.84358 -29.50122 -29.26309 -28.20116 -26.82848 -24.45027 -23.78146 -21.73590 -21.22299 -21.14915 -20.79086 -20.15532 -19.62221 -17.32735 -17.09614 -16.40971 -16.20184 -15.94264 -15.54720 -15.13318 -14.69514 -14.46166 -14.26979 -14.00465 -13.73346 -13.30351 -13.19983 -12.90356 -12.66202 -12.41879 -12.27818 -12.00900 -11.88609 -11.80621 -11.70260 -11.54712 -11.46100 -11.34230 -11.10156 -11.03551 -10.96467 -10.69615 -10.42704 -9.85469 -9.73346 -9.36403 -9.12526 -9.05705 -8.84421 -7.69100 -7.54570 -6.68520 -6.28594 -4.18733 2.11309 2.59960 2.75607 3.05341 3.11505 3.12261 3.17039 3.49513 3.67019 3.99520 4.15718 4.25644 4.28647 4.54464 4.58228 4.70781 4.75637 4.86081 5.01984 5.09895 5.12975 5.22629 5.33902 5.39487 5.42599 5.53229 5.55839 5.63040 5.68314 5.72519 5.78275 5.94727 6.06586 6.24174 6.29676 6.44798 6.57377 6.71806 6.92195 7.05336 7.13415 7.23873 7.31262 7.54327 7.61931 7.78133 7.99426 8.07693 8.27130 8.44150 8.58686 8.70823 8.96180 9.04813 10.29663 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001885 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.901261 B =14852.137484 C =15272.037706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.090 3.910 10 C -0.198 4.198 11 C -0.130 4.130 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.073 3.927 15 C 0.027 3.973 16 N -0.280 5.280 17 N -0.381 5.381 18 C 0.150 3.850 19 C 0.036 3.964 20 N -0.515 5.515 21 C 0.025 3.975 22 C -0.123 4.123 23 C -0.132 4.132 24 C 0.036 3.964 25 C -0.046 4.046 26 C -0.136 4.136 27 C -0.133 4.133 28 H 0.277 0.723 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.394 0.606 32 H 0.187 0.813 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.164 0.836 46 H 0.089 0.911 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -23.213 -0.561 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.088 3.912 10 C -0.218 4.218 11 C -0.151 4.151 12 C -0.043 4.043 13 N -0.291 5.291 14 C -0.035 4.035 15 C -0.162 4.162 16 N -0.102 5.102 17 N -0.171 5.171 18 C 0.028 3.972 19 C -0.093 4.093 20 N -0.240 5.240 21 C -0.103 4.103 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.092 4.092 25 C -0.192 4.192 26 C -0.157 4.157 27 C -0.153 4.153 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.228 0.772 32 H 0.204 0.796 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.181 0.819 46 H 0.107 0.893 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.854 -23.783 1.053 23.977 hybrid contribution 0.659 1.373 -1.735 2.309 sum -2.196 -22.410 -0.682 22.528 Atomic orbital electron populations 1.69843 1.07328 1.28736 1.37313 1.25844 0.94782 1.01071 0.92635 0.86280 0.80845 0.81251 0.78405 1.18574 1.19914 1.20129 1.19474 0.96401 0.90749 1.42601 0.90654 1.17606 0.92078 0.92155 0.89392 1.20635 1.02642 0.93036 1.05464 1.20198 0.95054 0.97233 1.02596 1.17163 0.95314 0.84388 1.07455 1.40779 1.58955 1.12961 1.16427 1.17789 1.06892 0.88459 0.90346 1.23939 1.03215 0.96738 0.92296 1.77148 1.20121 0.98537 1.14414 1.47939 1.55760 1.07352 1.06011 1.21441 0.98257 0.75676 1.01833 1.22577 0.96356 0.88262 1.02080 1.64814 1.27843 1.01783 1.29529 1.23352 1.01091 0.94259 0.91590 1.22475 0.97529 0.95799 1.00331 1.22405 0.97856 0.96806 0.99921 1.22879 0.91128 0.93754 1.01452 1.21559 1.14196 0.91829 0.91574 1.20242 0.99693 0.91887 1.03906 1.20932 0.98360 0.96117 0.99864 0.91179 0.88813 0.88817 0.77208 0.79611 0.89589 0.89331 0.94010 0.88911 0.89714 0.93493 0.90996 0.90585 0.91473 0.90855 0.93530 0.90028 0.81862 0.89264 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.94 10.91 55.54 0.61 -20.33 16 2 C 0.07 1.82 5.21 -17.34 -0.09 1.73 16 3 Si 0.91 18.86 29.58 -169.99 -5.03 13.84 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.46 -12.22 9.03 -37.91 -0.34 -12.57 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 9 C 0.09 2.38 5.55 -106.79 -0.59 1.79 16 10 C -0.20 -4.79 9.74 -39.27 -0.38 -5.17 16 11 C -0.13 -2.88 7.83 -39.76 -0.31 -3.19 16 12 C 0.05 1.10 6.30 -83.71 -0.53 0.58 16 13 N -0.67 -11.87 5.52 -8.49 -0.05 -11.92 16 14 C 0.07 1.25 6.51 -83.95 -0.55 0.71 16 15 C 0.03 0.49 9.79 -17.20 -0.17 0.32 16 16 N -0.28 -4.74 12.41 30.71 0.38 -4.36 16 17 N -0.38 -5.35 3.70 -60.99 -0.23 -5.58 16 18 C 0.15 1.54 6.17 -4.04 -0.02 1.52 16 19 C 0.04 0.37 5.21 -3.82 -0.02 0.35 16 20 N -0.51 -4.54 5.40 -230.45 -1.24 -5.78 16 21 C 0.02 0.17 5.10 -1.90 -0.01 0.16 16 22 C -0.12 -0.72 7.06 -24.87 -0.18 -0.90 16 23 C -0.13 -0.80 6.93 -25.37 -0.18 -0.98 16 24 C 0.04 0.28 6.70 -2.75 -0.02 0.26 16 25 C -0.05 -0.65 11.52 -16.63 -0.19 -0.84 16 26 C -0.14 -3.09 9.89 -39.76 -0.39 -3.48 16 27 C -0.13 -3.38 8.60 -39.27 -0.34 -3.72 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 30 H 0.09 1.95 6.18 -52.49 -0.32 1.63 16 31 H 0.39 6.04 8.92 -40.82 -0.36 5.67 16 32 H 0.19 3.50 6.66 -52.48 -0.35 3.15 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.70 6.73 -51.93 -0.35 0.35 16 35 H 0.04 0.46 7.81 -51.93 -0.41 0.06 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.52 7.67 -51.93 -0.40 0.13 16 38 H 0.05 0.33 8.00 -51.93 -0.42 -0.08 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.38 7.57 -51.93 -0.39 -0.01 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.12 3.17 6.25 -52.49 -0.33 2.84 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -28.89 379.10 -11.26 -40.14 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.10 Total: 11.70 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -4.31 Total: -23.42 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.53 Total: -47.97 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.89 -11.26 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176559656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.884 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds