Wall clock time and date at job start Tue Mar 31 2020 14:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30927 * 1 3 3 Si 1.86808 * 119.99800 * 2 1 4 4 H 1.48504 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46892 * 300.00082 * 3 2 1 6 6 H 1.48497 * 109.47052 * 60.00100 * 3 2 1 7 7 C 1.39825 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00439 * 192.90954 * 7 2 1 9 9 C 1.41095 * 119.99695 * 12.91854 * 7 2 1 10 10 C 1.40908 * 120.14811 * 208.02881 * 9 7 2 11 11 C 1.36288 * 119.84541 * 179.74910 * 10 9 7 12 12 C 1.39651 * 120.14952 * 0.24700 * 11 10 9 13 13 N 1.38677 * 119.84520 * 179.97438 * 12 11 10 14 14 C 1.40505 * 119.99943 * 31.50123 * 13 12 11 15 15 C 1.40311 * 126.09171 * 16.35139 * 14 13 12 16 16 N 1.30817 * 108.33985 * 179.97438 * 15 14 13 17 17 N 1.40066 * 108.40040 * 359.97438 * 16 15 14 18 18 C 1.46492 * 126.05092 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47589 * 304.97899 * 18 17 16 20 20 N 1.46898 * 109.47199 * 179.97438 * 19 18 17 21 21 C 1.48528 * 110.99933 * 52.60599 * 20 19 18 22 22 C 1.54941 * 103.22785 * 159.72026 * 21 20 19 23 23 C 1.54599 * 102.91778 * 322.58312 * 22 21 20 24 24 C 1.47908 * 110.99372 * 169.99913 * 20 19 18 25 25 C 1.35853 * 107.89931 * 359.73967 * 17 16 15 26 26 C 1.39647 * 120.30761 * 0.03010 * 12 11 10 27 27 C 1.36294 * 120.15146 * 359.94869 * 26 12 11 28 28 H 0.96996 * 120.00212 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.07589 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.92416 * 180.27758 * 11 10 9 31 31 H 0.96999 * 119.99876 * 211.50030 * 13 12 11 32 32 H 1.08004 * 125.82900 * 359.95630 * 15 14 13 33 33 H 1.09004 * 109.46846 * 64.97891 * 18 17 16 34 34 H 1.09000 * 109.47438 * 184.97207 * 18 17 16 35 35 H 1.08997 * 109.46649 * 299.99920 * 19 18 17 36 36 H 1.08999 * 109.46802 * 59.99410 * 19 18 17 37 37 H 1.09003 * 110.66692 * 278.15160 * 21 20 19 38 38 H 1.08999 * 110.67421 * 41.27849 * 21 20 19 39 39 H 1.08999 * 110.72427 * 204.22496 * 22 21 20 40 40 H 1.08996 * 110.72274 * 80.93654 * 22 21 20 41 41 H 1.08996 * 110.30846 * 263.03977 * 23 22 21 42 42 H 1.08994 * 110.30802 * 140.87500 * 23 22 21 43 43 H 1.08992 * 109.91778 * 333.50459 * 24 20 19 44 44 H 1.08995 * 109.91789 * 94.60797 * 24 20 19 45 45 H 1.07997 * 126.22728 * 180.26936 * 25 17 16 46 46 H 1.07997 * 119.92605 * 179.97438 * 26 12 11 47 47 H 1.07995 * 120.07593 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.7033 1.3465 -0.0006 5 1 1.8844 2.3965 -1.2125 6 1 1.8845 2.3965 1.2125 7 6 2.0085 -1.2109 0.0005 8 1 3.0680 -1.2226 0.2095 9 6 1.3298 -2.4175 -0.2721 10 6 1.7982 -3.6309 0.2697 11 6 1.1349 -4.7921 0.0065 12 6 -0.0035 -4.7817 -0.8023 13 7 -0.6733 -5.9669 -1.0664 14 6 -0.6889 -6.9938 -0.1075 15 6 -0.3646 -6.8609 1.2512 16 7 -0.4962 -8.0305 1.8221 17 7 -0.9092 -8.9522 0.8517 18 6 -1.1724 -10.3764 1.0719 19 6 0.0588 -11.0312 1.7016 20 7 -0.2054 -12.4592 1.9230 21 6 -0.6813 -13.1119 0.6766 22 6 -0.3996 -14.6138 0.9331 23 6 0.9418 -14.5875 1.7012 24 6 1.0318 -13.1739 2.3054 25 6 -1.0277 -8.2906 -0.3290 26 6 -0.4699 -3.5835 -1.3472 27 6 0.1835 -2.4151 -1.0918 28 1 -0.4850 0.8400 0.0004 29 1 2.6782 -3.6402 0.8958 30 1 1.4901 -5.7222 0.4248 31 1 -1.1310 -6.0871 -1.9131 32 1 -0.0583 -5.9488 1.7418 33 1 -2.0258 -10.4890 1.7407 34 1 -1.3921 -10.8570 0.1186 35 1 0.9121 -10.9186 1.0328 36 1 0.2784 -10.5505 2.6549 37 1 -1.7483 -12.9394 0.5353 38 1 -0.1157 -12.7559 -0.1844 39 1 -0.2944 -15.1528 -0.0084 40 1 -1.1861 -15.0546 1.5455 41 1 1.7728 -14.7602 1.0174 42 1 0.9396 -15.3375 2.4921 43 1 1.9008 -12.6530 1.9037 44 1 1.1048 -13.2349 3.3912 45 1 -1.3326 -8.7184 -1.2725 46 1 -1.3507 -3.5827 -1.9722 47 1 -0.1784 -1.4891 -1.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176559656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:16 Heat of formation + Delta-G solvation = 96.153698 kcal Electronic energy + Delta-G solvation = -26026.285055 eV Core-core repulsion = 22402.631623 eV Total energy + Delta-G solvation = -3623.653432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11046 -39.99743 -39.62310 -36.80191 -35.26782 -34.53041 -32.45858 -31.55585 -31.05869 -29.96444 -29.55448 -27.96920 -26.22818 -24.66656 -23.13259 -22.65846 -21.99719 -21.79129 -21.44462 -20.90516 -19.17182 -18.30622 -17.49442 -17.22068 -16.97590 -16.94112 -16.45059 -15.94346 -15.53729 -15.37384 -15.26533 -14.86461 -14.77580 -14.42695 -13.99035 -13.87169 -13.73659 -13.62599 -13.48948 -13.18943 -12.95910 -12.89825 -12.75257 -12.52387 -12.40615 -12.34123 -12.17317 -12.00127 -11.64734 -11.55822 -11.45605 -11.42512 -11.19638 -10.94425 -10.28290 -9.51586 -9.43772 -9.30224 -8.54203 -7.85687 -6.11358 0.85054 1.04992 1.16573 1.40961 1.49499 1.55092 1.55393 2.04623 2.26581 2.79726 2.90546 2.97402 3.51362 3.71915 3.79335 3.81342 3.95862 4.03368 4.11497 4.17450 4.25694 4.33772 4.46774 4.48980 4.53617 4.61462 4.66735 4.72263 4.77012 4.89674 4.92903 4.95602 5.01117 5.06613 5.18567 5.19106 5.27917 5.29789 5.34914 5.48448 5.73687 5.77808 5.83302 5.88434 5.97401 6.15693 6.19793 6.38829 6.64907 6.72502 6.86533 7.03867 7.11350 7.28426 8.45851 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001885 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.901261 B =14852.137484 C =15272.037706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.031 3.969 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.500 4.500 8 H 0.070 0.930 9 C 0.054 3.946 10 C -0.207 4.207 11 C -0.133 4.133 12 C 0.079 3.921 13 N -0.661 5.661 14 C 0.037 3.963 15 C 0.005 3.995 16 N -0.302 5.302 17 N -0.371 5.371 18 C 0.146 3.854 19 C 0.047 3.953 20 N -0.523 5.523 21 C 0.021 3.979 22 C -0.121 4.121 23 C -0.129 4.129 24 C 0.031 3.969 25 C -0.008 4.008 26 C -0.144 4.144 27 C -0.149 4.149 28 H 0.284 0.716 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.409 0.591 32 H 0.167 0.833 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.209 0.791 46 H 0.113 0.887 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 -25.970 -1.841 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.531 4.531 8 H 0.088 0.912 9 C 0.051 3.949 10 C -0.227 4.227 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.288 5.288 14 C -0.070 4.070 15 C -0.182 4.182 16 N -0.125 5.125 17 N -0.159 5.159 18 C 0.025 3.975 19 C -0.083 4.083 20 N -0.248 5.248 21 C -0.107 4.107 22 C -0.159 4.159 23 C -0.168 4.168 24 C -0.097 4.097 25 C -0.155 4.155 26 C -0.165 4.165 27 C -0.169 4.169 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.246 0.754 32 H 0.184 0.816 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.226 0.774 46 H 0.131 0.869 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.895 -26.613 -0.210 26.898 hybrid contribution 0.878 1.836 -1.303 2.416 sum -3.018 -24.778 -1.513 25.007 Atomic orbital electron populations 1.69904 1.08651 1.29895 1.38310 1.26643 0.95577 1.04166 0.91768 0.85189 0.79270 0.76655 0.78726 1.18437 1.18967 1.19434 1.19671 0.96410 0.92047 1.44925 0.91213 1.17909 0.93251 0.92992 0.90748 1.20780 1.03026 0.93359 1.05550 1.20311 0.95249 0.97001 1.02886 1.17189 0.94274 0.85452 1.04862 1.40558 1.58877 1.11956 1.17432 1.17926 1.09784 0.89503 0.89778 1.23761 1.04563 0.96702 0.93176 1.77132 1.21161 0.98749 1.15472 1.48370 1.53564 1.08381 1.05555 1.21791 0.98262 0.73528 1.03926 1.22356 0.96038 0.89320 1.00550 1.64825 1.28222 1.00936 1.30803 1.23477 1.01726 0.94782 0.90683 1.22491 0.97168 0.95189 1.01004 1.22409 0.98440 0.95633 1.00273 1.22939 0.90573 0.94802 1.01409 1.22211 1.10027 0.90555 0.92704 1.20439 1.00229 0.91432 1.04394 1.20874 0.98889 0.96576 1.00565 0.90594 0.88664 0.87533 0.75427 0.81602 0.88998 0.85840 0.94925 0.91328 0.88510 0.93208 0.89525 0.90471 0.90872 0.90138 0.94274 0.90428 0.77400 0.86852 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.21 10.91 21.81 0.24 -44.97 16 2 C 0.03 1.59 5.21 85.21 0.44 2.04 16 3 Si 0.98 39.67 29.58 68.60 2.03 41.70 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.50 -27.73 9.03 23.36 0.21 -27.52 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 C 0.05 2.95 5.55 -21.27 -0.12 2.83 16 10 C -0.21 -10.42 9.74 22.47 0.22 -10.20 16 11 C -0.13 -5.98 7.83 22.16 0.17 -5.81 16 12 C 0.08 3.34 6.30 38.74 0.24 3.58 16 13 N -0.66 -22.15 5.52 -180.77 -1.00 -23.15 16 14 C 0.04 1.18 6.51 37.70 0.25 1.43 16 15 C 0.01 0.19 9.79 85.35 0.84 1.02 16 16 N -0.30 -9.95 12.41 -56.74 -0.70 -10.66 16 17 N -0.37 -9.33 3.70 -346.88 -1.28 -10.61 16 18 C 0.15 2.50 6.17 86.38 0.53 3.03 16 19 C 0.05 0.88 5.21 86.30 0.45 1.33 16 20 N -0.52 -8.17 5.40 -883.02 -4.77 -12.93 16 21 C 0.02 0.22 5.10 86.65 0.44 0.66 16 22 C -0.12 -1.05 7.06 31.80 0.22 -0.82 16 23 C -0.13 -1.29 6.93 31.47 0.22 -1.07 16 24 C 0.03 0.44 6.70 86.45 0.58 1.02 16 25 C -0.01 -0.18 11.52 83.52 0.96 0.78 16 26 C -0.14 -6.53 9.89 22.16 0.22 -6.31 16 27 C -0.15 -7.85 8.60 22.47 0.19 -7.66 16 28 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.11 4.47 6.18 -2.91 -0.02 4.45 16 31 H 0.41 11.25 8.92 -92.71 -0.83 10.42 16 32 H 0.17 6.48 6.66 -2.91 -0.02 6.46 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.12 1.32 6.73 -2.39 -0.02 1.30 16 35 H 0.03 0.67 7.81 -2.39 -0.02 0.65 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 0.80 7.67 -2.39 -0.02 0.79 16 38 H 0.05 0.52 8.00 -2.39 -0.02 0.50 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.04 0.61 7.57 -2.39 -0.02 0.59 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.10 5.71 6.25 -2.91 -0.02 5.69 16 Total: -1.00 -65.44 379.10 0.74 -64.70 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.15 Total: 37.60 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 6.08 Total: -41.68 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -7.51 Total: -102.33 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -65.44 0.74 -64.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176559656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.852 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds