Wall clock time and date at job start Tue Mar 31 2020 14:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86793 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47106 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47179 * 120.00217 * 3 2 1 7 7 C 1.39923 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00079 * 166.62809 * 7 2 1 9 9 C 1.41417 * 120.00389 * 346.62946 * 7 2 1 10 10 C 1.40794 * 120.20362 * 333.34160 * 9 7 2 11 11 C 1.37650 * 119.90170 * 179.97438 * 10 9 7 12 12 C 1.38508 * 120.32846 * 0.02562 * 11 10 9 13 13 C 1.39331 * 120.41974 * 359.97438 * 12 11 10 14 14 N 1.39650 * 119.95469 * 179.97438 * 13 12 11 15 15 C 1.40754 * 120.00108 * 144.28896 * 14 13 12 16 16 C 1.40249 * 126.07499 * 350.48472 * 15 14 13 17 17 N 1.30840 * 108.35703 * 179.74420 * 16 15 14 18 18 N 1.40067 * 108.37021 * 0.40320 * 17 16 15 19 19 C 1.46506 * 126.06594 * 179.85792 * 18 17 16 20 20 C 1.53008 * 109.46853 * 304.68881 * 19 18 17 21 21 N 1.46901 * 109.46894 * 180.02562 * 20 19 18 22 22 C 1.48559 * 110.99691 * 190.00071 * 21 20 19 23 23 C 1.54380 * 104.69675 * 200.90081 * 22 21 20 24 24 C 1.54571 * 104.91144 * 23.87677 * 23 22 21 25 25 C 1.48553 * 110.99983 * 74.58032 * 21 20 19 26 26 C 1.35741 * 126.07976 * 170.48184 * 15 14 13 27 27 C 1.38357 * 120.08974 * 0.26542 * 13 12 11 28 28 H 0.97004 * 119.99408 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.04792 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.83725 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78865 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99955 * 324.28582 * 14 13 12 33 33 H 1.08003 * 125.82282 * 0.02562 * 16 15 14 34 34 H 1.08992 * 109.47145 * 184.68949 * 19 18 17 35 35 H 1.09006 * 109.47047 * 64.68679 * 19 18 17 36 36 H 1.09002 * 109.46675 * 59.99866 * 20 19 18 37 37 H 1.08994 * 109.46629 * 300.00195 * 20 19 18 38 38 H 1.09000 * 110.41466 * 319.73794 * 22 21 20 39 39 H 1.09001 * 110.41417 * 82.06182 * 22 21 20 40 40 H 1.08996 * 110.32727 * 142.80728 * 23 22 21 41 41 H 1.09001 * 110.32330 * 265.01830 * 23 22 21 42 42 H 1.08997 * 110.30463 * 241.08244 * 24 23 22 43 43 H 1.09004 * 110.31182 * 118.89537 * 24 23 22 44 44 H 1.08999 * 110.41150 * 277.82030 * 25 21 20 45 45 H 1.08999 * 110.41182 * 40.14011 * 25 21 20 46 46 H 1.08003 * 126.22135 * 359.97438 * 26 15 14 47 47 H 1.08005 * 120.16006 * 179.71698 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0962 1.6962 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0660 -1.2247 -0.2158 9 6 1.3296 -2.4198 0.2843 10 6 0.1702 -2.4103 1.0830 11 6 -0.4855 -3.5897 1.3548 12 6 -0.0102 -4.7874 0.8468 13 6 1.1359 -4.8124 0.0548 14 7 1.6069 -6.0255 -0.4519 15 6 2.1915 -6.0742 -1.7314 16 6 2.1990 -5.0375 -2.6760 17 7 2.8392 -5.4530 -3.7387 18 7 3.2555 -6.7717 -3.5158 19 6 4.0031 -7.6107 -4.4559 20 6 3.2463 -7.6879 -5.7835 21 7 3.9956 -8.5297 -6.7259 22 6 3.4231 -8.4370 -8.0936 23 6 3.9167 -9.7112 -8.8120 24 6 4.2095 -10.7193 -7.6774 25 6 3.8679 -9.9671 -6.3733 26 6 2.8482 -7.1329 -2.2704 27 6 1.8114 -3.6379 -0.2252 28 1 -0.4849 0.8401 0.0004 29 1 -0.2047 -1.4789 1.4812 30 1 -1.3745 -3.5813 1.9680 31 1 -0.5317 -5.7075 1.0652 32 1 1.5313 -6.8345 0.0779 33 1 1.7562 -4.0611 -2.5463 34 1 4.1122 -8.6127 -4.0411 35 1 4.9892 -7.1778 -4.6244 36 1 3.1372 -6.6858 -6.1983 37 1 2.2603 -8.1207 -5.6149 38 1 2.3340 -8.4231 -8.0498 39 1 3.7937 -7.5466 -8.6014 40 1 3.1412 -10.0976 -9.4733 41 1 4.8255 -9.5000 -9.3756 42 1 5.2618 -11.0034 -7.6861 43 1 3.5776 -11.6012 -7.7825 44 1 4.5750 -10.2298 -5.5865 45 1 2.8490 -10.1922 -6.0582 46 1 3.0167 -8.0883 -1.7958 47 1 2.7025 -3.6566 -0.8352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176560412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:38 Heat of formation + Delta-G solvation = 110.130464 kcal Electronic energy + Delta-G solvation = -26203.011865 eV Core-core repulsion = 22579.964512 eV Total energy + Delta-G solvation = -3623.047354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78655 -39.20660 -37.79099 -35.17779 -34.10738 -33.01809 -31.45149 -29.81754 -29.52750 -29.22985 -27.65502 -26.45224 -25.13747 -23.58314 -21.47352 -21.35273 -21.05201 -20.86312 -20.07641 -19.63940 -17.46944 -16.86585 -16.34014 -16.17215 -15.59056 -15.44353 -14.90985 -14.71862 -14.46579 -14.31617 -14.15748 -13.66276 -13.36285 -13.06647 -12.91636 -12.80447 -12.35194 -12.20126 -12.17774 -11.86421 -11.76582 -11.70086 -11.54868 -11.29784 -11.20627 -11.06482 -10.88933 -10.57612 -10.52298 -10.35784 -10.04129 -9.85752 -9.34267 -9.10793 -9.00818 -8.88237 -7.68427 -7.40446 -6.68735 -6.18609 -4.34236 2.18498 2.65241 2.84529 2.97327 3.10474 3.13938 3.25202 3.56124 3.70895 3.97881 4.18503 4.25714 4.30648 4.57648 4.64711 4.69920 4.86450 4.89216 5.09377 5.13936 5.17147 5.27441 5.35074 5.40881 5.45702 5.59692 5.62173 5.64316 5.72362 5.76897 5.79666 5.98917 6.11284 6.34272 6.44957 6.47500 6.58959 6.81028 7.01558 7.08923 7.16193 7.26320 7.34741 7.37738 7.80187 7.90424 8.07178 8.08884 8.22373 8.35961 8.59259 8.75205 8.96448 9.03850 10.25837 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.002258 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.579676 B =12397.474309 C =13516.877670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.129 3.871 10 C -0.178 4.178 11 C -0.086 4.086 12 C -0.273 4.273 13 C 0.192 3.808 14 N -0.677 5.677 15 C 0.070 3.930 16 C 0.033 3.967 17 N -0.280 5.280 18 N -0.383 5.383 19 C 0.156 3.844 20 C 0.034 3.966 21 N -0.510 5.510 22 C 0.033 3.967 23 C -0.125 4.125 24 C -0.124 4.124 25 C 0.026 3.974 26 C -0.041 4.041 27 C -0.259 4.259 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.396 0.604 33 H 0.194 0.806 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.164 0.836 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -17.469 -11.484 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.126 3.874 10 C -0.198 4.198 11 C -0.105 4.105 12 C -0.295 4.295 13 C 0.098 3.902 14 N -0.303 5.303 15 C -0.037 4.037 16 C -0.156 4.156 17 N -0.102 5.102 18 N -0.172 5.172 19 C 0.034 3.966 20 C -0.096 4.096 21 N -0.235 5.235 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.102 4.102 26 C -0.187 4.187 27 C -0.282 4.282 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.210 0.790 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.182 0.818 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.463 -16.776 -12.764 22.048 hybrid contribution -0.933 -0.077 1.101 1.446 sum 5.530 -16.853 -11.663 21.228 Atomic orbital electron populations 1.69817 1.07425 1.29069 1.35956 1.25881 0.94777 1.01177 0.92340 0.86362 0.80069 0.80317 0.79931 1.19023 1.20413 1.18927 1.19527 0.96566 0.90682 1.42300 0.90606 1.17432 0.91015 0.91500 0.87470 1.21344 0.99363 0.96660 1.02450 1.20481 0.98099 0.92865 0.99082 1.20075 0.99689 0.96990 1.12726 1.17349 0.92740 0.84392 0.95731 1.41312 1.66194 1.08829 1.13954 1.17764 1.02582 0.94716 0.88646 1.24119 1.00556 1.00945 0.89962 1.77193 1.17524 0.92182 1.23273 1.48021 1.46627 1.10353 1.12183 1.21289 0.94590 0.93173 0.87588 1.22530 0.94941 0.99459 0.92622 1.65276 1.50761 1.05423 1.01990 1.23102 0.97668 0.99184 0.89536 1.22346 1.01567 0.94755 0.97609 1.22341 1.02131 0.97837 0.93944 1.23227 1.00337 0.88432 0.98215 1.21525 1.07261 1.00805 0.89075 1.20882 1.03677 0.92254 1.11343 0.90957 0.86296 0.89307 0.89547 0.76994 0.78972 0.89459 0.89513 0.89108 0.93922 0.93668 0.89789 0.91305 0.90869 0.90903 0.91367 0.89970 0.93644 0.81831 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.63 10.84 55.55 0.60 -20.03 16 2 C 0.08 1.90 5.22 -17.34 -0.09 1.81 16 3 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.24 9.06 -37.74 -0.34 -12.58 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 9 C 0.13 3.42 5.56 -106.85 -0.59 2.82 16 10 C -0.18 -4.61 8.67 -38.83 -0.34 -4.95 16 11 C -0.09 -2.01 10.01 -39.70 -0.40 -2.41 16 12 C -0.27 -6.02 9.97 -39.08 -0.39 -6.41 16 13 C 0.19 4.26 6.23 -83.85 -0.52 3.73 16 14 N -0.68 -12.43 5.56 -8.62 -0.05 -12.48 16 15 C 0.07 1.26 6.62 -83.89 -0.56 0.71 16 16 C 0.03 0.64 9.93 -17.22 -0.17 0.47 16 17 N -0.28 -5.08 12.41 30.71 0.38 -4.69 16 18 N -0.38 -5.68 3.70 -60.99 -0.23 -5.91 16 19 C 0.16 1.71 6.63 -4.03 -0.03 1.69 16 20 C 0.03 0.36 5.02 -3.82 -0.02 0.34 16 21 N -0.51 -4.66 5.34 -229.97 -1.23 -5.89 16 22 C 0.03 0.27 6.45 -2.18 -0.01 0.25 16 23 C -0.12 -0.80 7.02 -25.18 -0.18 -0.97 16 24 C -0.12 -0.77 7.01 -25.18 -0.18 -0.95 16 25 C 0.03 0.19 5.91 -2.19 -0.01 0.18 16 26 C -0.04 -0.60 11.52 -16.63 -0.19 -0.80 16 27 C -0.26 -6.31 7.58 -38.67 -0.29 -6.60 16 28 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 29 H 0.12 3.18 6.15 -52.48 -0.32 2.86 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.40 6.13 8.95 -40.82 -0.37 5.76 16 33 H 0.19 4.07 6.40 -52.48 -0.34 3.74 16 34 H 0.09 0.75 7.40 -51.93 -0.38 0.37 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.04 0.48 7.76 -51.93 -0.40 0.08 16 38 H 0.04 0.37 8.00 -51.93 -0.42 -0.04 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 45 H 0.05 0.35 7.75 -51.93 -0.40 -0.06 16 46 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 47 H 0.10 2.39 6.29 -52.48 -0.33 2.06 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -28.95 381.01 -11.25 -40.20 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.14 Total: 12.83 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -4.31 Total: -23.67 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.52 Total: -49.00 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.95 -11.25 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176560412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.333 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds