Wall clock time and date at job start Tue Mar 31 2020 14:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86793 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47106 * 239.99932 * 3 2 1 5 5 H 1.48496 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47179 * 120.00217 * 3 2 1 7 7 C 1.39923 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00079 * 166.62809 * 7 2 1 9 9 C 1.41417 * 120.00389 * 346.62946 * 7 2 1 10 10 C 1.40794 * 120.20362 * 333.34160 * 9 7 2 11 11 C 1.37650 * 119.90170 * 179.97438 * 10 9 7 12 12 C 1.38508 * 120.32846 * 0.02562 * 11 10 9 13 13 C 1.39331 * 120.41974 * 359.97438 * 12 11 10 14 14 N 1.39650 * 119.95469 * 179.97438 * 13 12 11 15 15 C 1.40754 * 120.00108 * 144.28896 * 14 13 12 16 16 C 1.40249 * 126.07499 * 350.48472 * 15 14 13 17 17 N 1.30840 * 108.35703 * 179.74420 * 16 15 14 18 18 N 1.40067 * 108.37021 * 0.40320 * 17 16 15 19 19 C 1.46506 * 126.06594 * 179.85792 * 18 17 16 20 20 C 1.53008 * 109.46853 * 304.68881 * 19 18 17 21 21 N 1.46901 * 109.46894 * 180.02562 * 20 19 18 22 22 C 1.48559 * 110.99691 * 190.00071 * 21 20 19 23 23 C 1.54380 * 104.69675 * 200.90081 * 22 21 20 24 24 C 1.54571 * 104.91144 * 23.87677 * 23 22 21 25 25 C 1.48553 * 110.99983 * 74.58032 * 21 20 19 26 26 C 1.35741 * 126.07976 * 170.48184 * 15 14 13 27 27 C 1.38357 * 120.08974 * 0.26542 * 13 12 11 28 28 H 0.97004 * 119.99408 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.04792 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.83725 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78865 * 180.02562 * 12 11 10 32 32 H 0.96998 * 119.99955 * 324.28582 * 14 13 12 33 33 H 1.08003 * 125.82282 * 0.02562 * 16 15 14 34 34 H 1.08992 * 109.47145 * 184.68949 * 19 18 17 35 35 H 1.09006 * 109.47047 * 64.68679 * 19 18 17 36 36 H 1.09002 * 109.46675 * 59.99866 * 20 19 18 37 37 H 1.08994 * 109.46629 * 300.00195 * 20 19 18 38 38 H 1.09000 * 110.41466 * 319.73794 * 22 21 20 39 39 H 1.09001 * 110.41417 * 82.06182 * 22 21 20 40 40 H 1.08996 * 110.32727 * 142.80728 * 23 22 21 41 41 H 1.09001 * 110.32330 * 265.01830 * 23 22 21 42 42 H 1.08997 * 110.30463 * 241.08244 * 24 23 22 43 43 H 1.09004 * 110.31182 * 118.89537 * 24 23 22 44 44 H 1.08999 * 110.41150 * 277.82030 * 25 21 20 45 45 H 1.08999 * 110.41182 * 40.14011 * 25 21 20 46 46 H 1.08003 * 126.22135 * 359.97438 * 26 15 14 47 47 H 1.08005 * 120.16006 * 179.71698 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0962 1.6962 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0660 -1.2247 -0.2158 9 6 1.3296 -2.4198 0.2843 10 6 0.1702 -2.4103 1.0830 11 6 -0.4855 -3.5897 1.3548 12 6 -0.0102 -4.7874 0.8468 13 6 1.1359 -4.8124 0.0548 14 7 1.6069 -6.0255 -0.4519 15 6 2.1915 -6.0742 -1.7314 16 6 2.1990 -5.0375 -2.6760 17 7 2.8392 -5.4530 -3.7387 18 7 3.2555 -6.7717 -3.5158 19 6 4.0031 -7.6107 -4.4559 20 6 3.2463 -7.6879 -5.7835 21 7 3.9956 -8.5297 -6.7259 22 6 3.4231 -8.4370 -8.0936 23 6 3.9167 -9.7112 -8.8120 24 6 4.2095 -10.7193 -7.6774 25 6 3.8679 -9.9671 -6.3733 26 6 2.8482 -7.1329 -2.2704 27 6 1.8114 -3.6379 -0.2252 28 1 -0.4849 0.8401 0.0004 29 1 -0.2047 -1.4789 1.4812 30 1 -1.3745 -3.5813 1.9680 31 1 -0.5317 -5.7075 1.0652 32 1 1.5313 -6.8345 0.0779 33 1 1.7562 -4.0611 -2.5463 34 1 4.1122 -8.6127 -4.0411 35 1 4.9892 -7.1778 -4.6244 36 1 3.1372 -6.6858 -6.1983 37 1 2.2603 -8.1207 -5.6149 38 1 2.3340 -8.4231 -8.0498 39 1 3.7937 -7.5466 -8.6014 40 1 3.1412 -10.0976 -9.4733 41 1 4.8255 -9.5000 -9.3756 42 1 5.2618 -11.0034 -7.6861 43 1 3.5776 -11.6012 -7.7825 44 1 4.5750 -10.2298 -5.5865 45 1 2.8490 -10.1922 -6.0582 46 1 3.0167 -8.0883 -1.7958 47 1 2.7025 -3.6566 -0.8352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176560412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:37 Heat of formation + Delta-G solvation = 93.413809 kcal Electronic energy + Delta-G solvation = -26203.736754 eV Core-core repulsion = 22579.964512 eV Total energy + Delta-G solvation = -3623.772242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11134 -39.90303 -39.51848 -36.72057 -35.34618 -34.61480 -32.45918 -31.68918 -30.94884 -29.83146 -28.94701 -27.89543 -26.96001 -24.55904 -22.85572 -22.77284 -22.00671 -21.80890 -21.43997 -21.05720 -19.17515 -18.16293 -17.40720 -17.06980 -16.92386 -16.78082 -16.43061 -16.18398 -15.78341 -15.34064 -15.23676 -14.97544 -14.70353 -14.58941 -14.10981 -13.87868 -13.59710 -13.56917 -13.47349 -13.08622 -12.98381 -12.77093 -12.69337 -12.47262 -12.35275 -12.20264 -12.12887 -12.00832 -11.76294 -11.71743 -11.53166 -11.36528 -11.17235 -10.94671 -10.29678 -9.61033 -9.35897 -9.28434 -8.57127 -7.73991 -6.33404 0.87301 1.03730 1.17510 1.38479 1.49471 1.52391 1.56594 2.05108 2.23272 2.75189 2.81468 2.96539 3.54636 3.70037 3.81790 3.86733 3.94686 4.01734 4.15589 4.19806 4.28002 4.33803 4.51072 4.52583 4.61174 4.67250 4.68899 4.73486 4.78474 4.86141 4.88822 4.96620 5.07719 5.12592 5.15741 5.19950 5.25817 5.27684 5.30834 5.45754 5.61852 5.79971 5.86772 5.97673 6.07194 6.17124 6.20636 6.32034 6.59785 6.71204 6.81205 7.00590 7.12260 7.23212 8.39233 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.002258 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.579676 B =12397.474309 C =13516.877670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.068 0.932 9 C 0.100 3.900 10 C -0.208 4.208 11 C -0.086 4.086 12 C -0.269 4.269 13 C 0.203 3.797 14 N -0.668 5.668 15 C 0.035 3.965 16 C 0.007 3.993 17 N -0.304 5.304 18 N -0.370 5.370 19 C 0.150 3.850 20 C 0.044 3.956 21 N -0.517 5.517 22 C 0.028 3.972 23 C -0.122 4.122 24 C -0.122 4.122 25 C 0.022 3.978 26 C -0.002 4.002 27 C -0.271 4.271 28 H 0.286 0.714 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.414 0.586 33 H 0.161 0.839 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.045 0.955 46 H 0.214 0.786 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 -20.615 -11.784 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.086 0.914 9 C 0.097 3.903 10 C -0.228 4.228 11 C -0.105 4.105 12 C -0.291 4.291 13 C 0.106 3.894 14 N -0.296 5.296 15 C -0.071 4.071 16 C -0.180 4.180 17 N -0.127 5.127 18 N -0.158 5.158 19 C 0.030 3.970 20 C -0.085 4.085 21 N -0.241 5.241 22 C -0.100 4.100 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.150 4.150 27 C -0.294 4.294 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.251 0.749 33 H 0.179 0.821 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.231 0.769 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.332 -19.970 -13.098 24.982 hybrid contribution -1.149 0.639 1.055 1.686 sum 6.183 -19.330 -12.043 23.599 Atomic orbital electron populations 1.69879 1.08712 1.30254 1.36516 1.26690 0.95589 1.04244 0.91420 0.85294 0.78786 0.75987 0.79868 1.18847 1.19008 1.18452 1.19726 0.96494 0.92119 1.44565 0.91423 1.17764 0.91859 0.92440 0.88246 1.21272 1.00338 0.97131 1.04077 1.20785 0.98489 0.92453 0.98771 1.20422 0.99301 0.97777 1.11620 1.17376 0.92167 0.85168 0.94644 1.41060 1.66187 1.08010 1.14340 1.17909 1.05092 0.95554 0.88580 1.23771 1.02035 1.00692 0.91529 1.77153 1.18286 0.94183 1.23126 1.48454 1.45075 1.09431 1.12853 1.21654 0.93973 0.94130 0.87265 1.22313 0.94864 0.98574 0.92767 1.65298 1.50380 1.06451 1.02003 1.23165 0.97407 1.00098 0.89355 1.22351 1.01981 0.93888 0.97787 1.22360 1.02775 0.97928 0.92970 1.23336 1.00701 0.87190 0.99282 1.22217 1.03466 1.01217 0.88053 1.20863 1.03846 0.92908 1.11739 0.90322 0.88057 0.86775 0.86237 0.74933 0.82146 0.85734 0.89304 0.91571 0.94507 0.94167 0.90340 0.90267 0.90594 0.90346 0.90156 0.88780 0.93682 0.76924 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.68 10.84 21.82 0.24 -44.45 16 2 C 0.03 1.82 5.22 85.25 0.44 2.27 16 3 Si 0.98 40.06 29.58 68.60 2.03 42.09 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.50 -28.13 9.06 23.46 0.21 -27.92 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 9 C 0.10 5.58 5.56 -21.31 -0.12 5.46 16 10 C -0.21 -11.20 8.67 22.76 0.20 -11.00 16 11 C -0.09 -4.01 10.01 22.20 0.22 -3.79 16 12 C -0.27 -11.55 9.97 22.60 0.23 -11.32 16 13 C 0.20 8.96 6.23 38.19 0.24 9.20 16 14 N -0.67 -23.43 5.56 -181.18 -1.01 -24.44 16 15 C 0.03 1.21 6.62 37.62 0.25 1.46 16 16 C 0.01 0.27 9.93 85.33 0.85 1.12 16 17 N -0.30 -11.15 12.41 -56.77 -0.70 -11.85 16 18 N -0.37 -10.20 3.70 -346.88 -1.29 -11.48 16 19 C 0.15 2.87 6.63 86.38 0.57 3.45 16 20 C 0.04 0.88 5.02 86.31 0.43 1.31 16 21 N -0.52 -8.50 5.34 -881.51 -4.71 -13.21 16 22 C 0.03 0.42 6.45 86.45 0.56 0.97 16 23 C -0.12 -1.31 7.02 31.60 0.22 -1.09 16 24 C -0.12 -1.16 7.01 31.60 0.22 -0.94 16 25 C 0.02 0.27 5.91 86.45 0.51 0.78 16 26 C 0.00 -0.05 11.52 83.48 0.96 0.91 16 27 C -0.27 -13.78 7.58 22.86 0.17 -13.61 16 28 H 0.29 14.02 8.30 -92.71 -0.77 13.26 16 29 H 0.10 5.72 6.15 -2.91 -0.02 5.70 16 30 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 32 H 0.41 11.47 8.95 -92.71 -0.83 10.64 16 33 H 0.16 7.41 6.40 -2.91 -0.02 7.40 16 34 H 0.12 1.52 7.40 -2.39 -0.02 1.50 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.04 0.77 7.76 -2.39 -0.02 0.75 16 38 H 0.04 0.64 8.00 -2.39 -0.02 0.62 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.09 0.90 7.85 -2.39 -0.02 0.88 16 45 H 0.04 0.55 7.75 -2.39 -0.02 0.53 16 46 H 0.21 3.40 8.06 -2.91 -0.02 3.37 16 47 H 0.09 4.59 6.29 -2.91 -0.02 4.57 16 Total: -1.00 -66.93 381.01 0.88 -66.05 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.15 Total: 40.04 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 6.17 Total: -42.75 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -7.47 Total: -105.43 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -66.93 0.88 -66.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176560412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.462 kcal (2) G-P(sol) polarization free energy of solvation -66.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds