Wall clock time and date at job start Tue Mar 31 2020 14:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99497 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21603 * 120.00257 * 359.72088 * 17 16 15 19 19 C 1.47425 * 119.99743 * 179.72398 * 17 16 15 20 20 C 1.41295 * 126.41512 * 0.02562 * 19 17 16 21 21 N 1.30447 * 108.02210 * 179.97438 * 20 19 17 22 22 N 1.39928 * 108.89904 * 359.97438 * 21 20 19 23 23 C 1.46508 * 125.75569 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47240 * 304.98095 * 23 22 21 25 25 F 1.39898 * 109.46958 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49378 * 359.75348 * 22 21 20 27 27 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 30 30 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 31 31 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 32 32 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 33 33 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 34 34 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 35 35 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 36 36 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 37 37 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 38 38 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 39 39 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 40 40 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 41 41 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 42 42 H 1.08003 * 125.98888 * 359.94654 * 20 19 17 43 43 H 1.09003 * 109.46632 * 64.98079 * 23 22 21 44 44 H 1.08995 * 109.47040 * 184.97311 * 23 22 21 45 45 H 1.09001 * 109.46392 * 299.99675 * 24 23 22 46 46 H 1.08998 * 109.47040 * 59.99477 * 24 23 22 47 47 H 1.08003 * 126.29424 * 180.24694 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5517 -12.2316 -0.0071 19 6 1.4015 -13.5082 -0.0138 20 6 2.8056 -13.6660 -0.0140 21 7 3.0681 -14.9438 -0.0205 22 7 1.8626 -15.6541 -0.0240 23 6 1.7286 -17.1130 -0.0319 24 6 2.5052 -17.6901 -1.2171 25 9 2.3767 -19.0832 -1.2250 26 6 0.8493 -14.7734 -0.0141 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6848 -3.7144 0.8905 30 1 2.6848 -3.7144 -0.8894 31 1 0.4369 -4.7622 -0.8885 32 1 0.4377 -4.7618 0.8914 33 1 2.4563 -6.2024 0.8902 34 1 2.4550 -6.2023 -0.8899 35 1 0.2079 -7.2497 -0.8892 36 1 0.2084 -7.2502 0.8908 37 1 2.2265 -8.6904 0.8905 38 1 2.2265 -8.6903 -0.8895 39 1 -0.0207 -9.7376 -0.8904 40 1 -0.0213 -9.7381 0.8896 41 1 2.3082 -11.0642 -0.0011 42 1 3.5339 -12.8685 -0.0100 43 1 2.1284 -17.5196 0.8971 44 1 0.6759 -17.3807 -0.1222 45 1 2.1053 -17.2835 -2.1460 46 1 3.5579 -17.4224 -1.1268 47 1 -0.2043 -15.0110 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178908400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:35 Heat of formation + Delta-G solvation = -26.613921 kcal Electronic energy + Delta-G solvation = -25130.967873 eV Core-core repulsion = 21071.221613 eV Total energy + Delta-G solvation = -4059.746260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.45949 -41.99546 -39.53268 -36.79330 -35.37904 -34.94405 -33.89935 -31.94421 -31.09258 -30.30298 -29.44914 -26.94606 -24.74594 -24.16602 -23.10537 -22.15939 -21.38892 -21.21836 -20.63243 -20.27195 -18.58062 -17.22341 -17.01559 -16.90802 -16.33377 -16.17911 -16.15885 -15.76290 -15.41959 -15.04660 -14.66290 -14.62809 -14.17578 -14.09559 -13.62997 -13.49970 -13.36242 -13.34659 -12.89501 -12.68523 -12.33400 -12.32679 -11.86996 -11.69998 -11.51089 -11.33332 -11.16858 -10.90769 -10.72403 -10.70255 -10.41408 -10.26965 -10.23928 -10.18670 -9.92083 -9.62759 -9.48631 -9.17732 -8.83397 -6.87068 -5.72718 -3.00991 0.93589 1.53395 1.60789 2.92187 3.08983 3.40374 3.45620 3.50879 3.53454 3.75812 4.05333 4.10974 4.20102 4.35789 4.50637 4.54866 4.60123 4.67586 4.78213 4.80399 4.96070 4.99196 5.13909 5.25979 5.41599 5.42477 5.58060 5.66386 5.72146 5.74479 5.79361 5.96740 5.98838 6.09685 6.15782 6.16855 6.36373 6.36902 6.43751 6.51029 6.86122 6.94070 6.98068 7.22402 7.73925 7.96354 8.46713 9.57444 10.17307 10.51749 11.50552 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.051907 B = 0.001173 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.297070 B =23874.435956 C =24263.422502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.119 3.881 16 N -0.726 5.726 17 C 0.593 3.407 18 O -0.549 6.549 19 C -0.290 4.290 20 C 0.087 3.913 21 N -0.296 5.296 22 N -0.365 5.365 23 C 0.101 3.899 24 C 0.053 3.947 25 F -0.206 7.206 26 C 0.134 3.866 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.193 0.807 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -39.309 -0.660 39.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.169 4.169 15 C -0.004 4.004 16 N -0.377 5.377 17 C 0.380 3.620 18 O -0.428 6.428 19 C -0.305 4.305 20 C -0.101 4.101 21 N -0.115 5.115 22 N -0.144 5.144 23 C -0.021 4.021 24 C -0.003 4.003 25 F -0.187 7.187 26 C -0.017 4.017 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.210 0.790 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.800 -40.261 -0.664 40.551 hybrid contribution -0.023 1.537 0.041 1.537 sum 4.777 -38.724 -0.622 39.023 Atomic orbital electron populations 1.69670 1.05128 1.25477 1.58077 1.24745 0.95525 0.97688 1.03194 0.86117 0.78778 0.84146 0.77183 1.20558 1.21872 1.21876 1.19308 0.91079 0.84291 1.42275 0.91170 1.42407 1.05918 1.00178 1.89441 1.20658 0.93665 0.85720 0.97522 1.21731 0.98888 0.93857 1.02002 1.21501 0.97876 0.93870 1.01888 1.21518 0.98427 0.92851 1.02653 1.21832 0.98269 0.94016 1.02770 1.21450 0.94880 0.81375 1.02684 1.45792 1.10279 1.05693 1.75924 1.17194 0.86526 0.82569 0.75669 1.90797 1.13390 1.87654 1.50912 1.20298 0.93441 0.93675 1.23117 1.24136 0.94940 0.94310 0.96729 1.77183 1.04100 1.05376 1.24856 1.48283 1.04283 1.06226 1.55614 1.22359 1.03761 0.74696 1.01266 1.22145 1.03198 0.75942 0.98976 1.92816 1.97543 1.30616 1.97698 1.23047 0.95217 0.88472 0.94975 0.93596 0.78337 0.96595 0.96588 0.92094 0.92086 0.92101 0.92107 0.91611 0.91616 0.91244 0.91258 0.91277 0.91264 0.76686 0.79050 0.87917 0.86869 0.89892 0.88908 0.79204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.74 -19.40 5.60 -59.92 -0.34 -19.73 16 10 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 11 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 12 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 13 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 14 C -0.13 -0.98 5.33 -26.73 -0.14 -1.12 16 15 C 0.12 1.00 5.67 -4.04 -0.02 0.97 16 16 N -0.73 -5.36 5.55 -61.38 -0.34 -5.70 16 17 C 0.59 5.67 7.81 -12.52 -0.10 5.57 16 18 O -0.55 -7.35 16.90 5.27 0.09 -7.26 16 19 C -0.29 -2.13 6.13 -105.07 -0.64 -2.78 16 20 C 0.09 0.51 11.50 -16.98 -0.20 0.32 16 21 N -0.30 -2.04 12.33 30.86 0.38 -1.66 16 22 N -0.36 -1.94 3.65 -60.80 -0.22 -2.16 16 23 C 0.10 0.25 6.94 -4.04 -0.03 0.22 16 24 C 0.05 0.17 7.73 37.16 0.29 0.45 16 25 F -0.21 -1.07 17.36 2.25 0.04 -1.03 16 26 C 0.13 0.80 11.25 -16.56 -0.19 0.61 16 27 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.40 1.80 7.43 -40.82 -0.30 1.50 16 42 H 0.19 0.51 7.50 -52.48 -0.39 0.11 16 43 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.11 0.03 8.06 -51.93 -0.42 -0.39 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.19 0.75 8.06 -52.48 -0.42 0.32 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -36.64 402.18 -8.09 -44.73 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.74 Total: 2.40 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.72 Total: -5.21 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.21 Total: -57.42 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.26 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.64 -8.09 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178908400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.115 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds