Wall clock time and date at job start Tue Mar 31 2020 14:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47162 * 299.99625 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99497 * 3 2 1 7 7 C 1.38817 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46959 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47510 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21603 * 120.00257 * 359.72088 * 17 16 15 19 19 C 1.47425 * 119.99743 * 179.72398 * 17 16 15 20 20 C 1.41295 * 126.41512 * 0.02562 * 19 17 16 21 21 N 1.30447 * 108.02210 * 179.97438 * 20 19 17 22 22 N 1.39928 * 108.89904 * 359.97438 * 21 20 19 23 23 C 1.46508 * 125.75569 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47240 * 304.98095 * 23 22 21 25 25 F 1.39898 * 109.46958 * 180.02562 * 24 23 22 26 26 C 1.34259 * 108.49378 * 359.75348 * 22 21 20 27 27 H 0.96996 * 120.00448 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.46952 * 60.00050 * 10 9 7 30 30 H 1.08998 * 109.47023 * 300.00119 * 10 9 7 31 31 H 1.09000 * 109.47439 * 59.99896 * 11 10 9 32 32 H 1.08998 * 109.47408 * 299.99954 * 11 10 9 33 33 H 1.09008 * 109.46645 * 60.00006 * 12 11 10 34 34 H 1.08998 * 109.47049 * 300.00396 * 12 11 10 35 35 H 1.08995 * 109.46638 * 60.00101 * 13 12 11 36 36 H 1.09007 * 109.46700 * 300.00274 * 13 12 11 37 37 H 1.08995 * 109.47672 * 60.00331 * 14 13 12 38 38 H 1.09006 * 109.46819 * 299.99760 * 14 13 12 39 39 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 40 40 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 41 41 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 42 42 H 1.08003 * 125.98888 * 359.94654 * 20 19 17 43 43 H 1.09003 * 109.46632 * 64.98079 * 23 22 21 44 44 H 1.08995 * 109.47040 * 184.97311 * 23 22 21 45 45 H 1.09001 * 109.46392 * 299.99675 * 24 23 22 46 46 H 1.08998 * 109.47040 * 59.99477 * 24 23 22 47 47 H 1.08003 * 126.29424 * 180.24694 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 6 0.8348 -7.3077 0.0005 14 6 1.5999 -8.6326 0.0005 15 6 0.6057 -9.7956 -0.0001 16 7 1.3382 -11.0643 -0.0007 17 6 0.6643 -12.2315 -0.0070 18 8 -0.5517 -12.2316 -0.0071 19 6 1.4015 -13.5082 -0.0138 20 6 2.8056 -13.6660 -0.0140 21 7 3.0681 -14.9438 -0.0205 22 7 1.8626 -15.6541 -0.0240 23 6 1.7286 -17.1130 -0.0319 24 6 2.5052 -17.6901 -1.2171 25 9 2.3767 -19.0832 -1.2250 26 6 0.8493 -14.7734 -0.0141 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6848 -3.7144 0.8905 30 1 2.6848 -3.7144 -0.8894 31 1 0.4369 -4.7622 -0.8885 32 1 0.4377 -4.7618 0.8914 33 1 2.4563 -6.2024 0.8902 34 1 2.4550 -6.2023 -0.8899 35 1 0.2079 -7.2497 -0.8892 36 1 0.2084 -7.2502 0.8908 37 1 2.2265 -8.6904 0.8905 38 1 2.2265 -8.6903 -0.8895 39 1 -0.0207 -9.7376 -0.8904 40 1 -0.0213 -9.7381 0.8896 41 1 2.3082 -11.0642 -0.0011 42 1 3.5339 -12.8685 -0.0100 43 1 2.1284 -17.5196 0.8971 44 1 0.6759 -17.3807 -0.1222 45 1 2.1053 -17.2835 -2.1460 46 1 3.5579 -17.4224 -1.1268 47 1 -0.2043 -15.0110 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178908400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:34 Heat of formation + Delta-G solvation = -51.375466 kcal Electronic energy + Delta-G solvation = -25132.041614 eV Core-core repulsion = 21071.221613 eV Total energy + Delta-G solvation = -4060.820001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.79878 -42.43772 -40.23472 -37.86372 -36.69123 -35.40774 -35.11621 -33.47401 -31.77077 -31.37767 -30.14608 -28.17444 -25.90839 -24.85350 -24.12589 -23.16674 -22.17250 -21.94041 -21.73816 -20.89681 -19.14962 -19.00834 -17.51312 -17.37697 -17.01616 -16.91444 -16.65951 -16.62027 -16.20407 -16.13687 -15.64639 -15.38303 -15.27024 -15.17543 -14.90129 -14.65891 -14.06909 -13.97464 -13.84405 -13.68485 -13.38024 -13.02422 -12.93911 -12.67392 -12.62399 -12.34717 -12.27006 -12.09739 -11.98904 -11.83194 -11.77045 -11.76587 -11.42192 -11.30349 -10.93599 -10.91658 -10.67640 -10.16053 -9.69098 -9.00530 -7.95811 -5.25244 0.46014 1.12548 1.19641 1.47459 1.48820 1.59142 2.32152 2.45941 2.56356 3.13652 3.37975 3.56089 3.72144 3.75706 3.76789 3.96717 4.03132 4.06854 4.10483 4.15891 4.22772 4.29389 4.33306 4.38389 4.50094 4.64241 4.68424 4.70217 4.74725 4.82742 4.92259 5.02269 5.03366 5.10441 5.20551 5.33141 5.35677 5.39442 5.48806 5.53018 5.57226 5.60404 5.73118 6.27207 6.42691 6.65828 7.31852 7.32555 8.09922 8.32614 9.28365 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.051907 B = 0.001173 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.297070 B =23874.435956 C =24263.422502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.122 3.878 16 N -0.714 5.714 17 C 0.591 3.409 18 O -0.596 6.596 19 C -0.313 4.313 20 C 0.093 3.907 21 N -0.320 5.320 22 N -0.361 5.361 23 C 0.098 3.902 24 C 0.056 3.944 25 F -0.217 7.217 26 C 0.137 3.863 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.220 0.780 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -40.354 -0.622 40.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.001 4.001 16 N -0.365 5.365 17 C 0.380 3.620 18 O -0.478 6.478 19 C -0.328 4.328 20 C -0.094 4.094 21 N -0.139 5.139 22 N -0.139 5.139 23 C -0.023 4.023 24 C 0.001 3.999 25 F -0.198 7.198 26 C -0.015 4.015 27 H 0.061 0.939 28 H 0.204 0.796 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.252 0.748 42 H 0.236 0.764 43 H 0.127 0.873 44 H 0.156 0.844 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.583 -41.348 -0.627 41.874 hybrid contribution -0.534 1.782 0.028 1.860 sum 6.049 -39.567 -0.598 40.031 Atomic orbital electron populations 1.69829 1.06748 1.26105 1.59579 1.25623 0.96441 1.01283 1.03578 0.85033 0.78252 0.79477 0.76764 1.18879 1.21871 1.21881 1.19734 0.91595 0.85516 1.41254 0.90589 1.42683 1.05703 1.01583 1.89446 1.20886 0.94449 0.85058 0.97471 1.21646 0.98090 0.94439 1.01359 1.21421 0.97947 0.92043 1.02746 1.21453 0.98078 0.93253 1.02412 1.21694 0.97769 0.91984 1.04079 1.21328 0.95066 0.82190 1.01541 1.45668 1.11074 1.04879 1.74890 1.17520 0.86075 0.83605 0.74815 1.90767 1.15374 1.88326 1.53355 1.20238 0.94172 0.93157 1.25205 1.24558 0.94777 0.94690 0.95422 1.77158 1.05103 1.05891 1.25782 1.48455 1.03718 1.07036 1.54726 1.22576 1.05330 0.73171 1.01233 1.22137 1.03102 0.75131 0.99564 1.92792 1.97582 1.31698 1.97776 1.23367 0.96064 0.88364 0.93698 0.93939 0.79593 0.96272 0.96259 0.92770 0.92768 0.91227 0.91224 0.91960 0.91976 0.89913 0.89907 0.92515 0.92520 0.74825 0.76388 0.87254 0.84401 0.89367 0.89421 0.77630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -39.86 5.60 -343.47 -1.92 -41.79 16 10 C 0.15 6.01 6.26 86.38 0.54 6.55 16 11 C -0.12 -3.71 5.33 30.59 0.16 -3.55 16 12 C -0.10 -2.28 5.21 30.60 0.16 -2.12 16 13 C -0.11 -2.04 5.21 30.59 0.16 -1.88 16 14 C -0.12 -1.48 5.33 30.59 0.16 -1.32 16 15 C 0.12 1.92 5.67 86.38 0.49 2.41 16 16 N -0.71 -9.57 5.55 -466.36 -2.59 -12.15 16 17 C 0.59 10.97 7.81 86.66 0.68 11.65 16 18 O -0.60 -16.17 16.90 -4.04 -0.07 -16.23 16 19 C -0.31 -4.26 6.13 -20.15 -0.12 -4.38 16 20 C 0.09 0.94 11.50 85.65 0.99 1.93 16 21 N -0.32 -3.94 12.33 -56.27 -0.69 -4.63 16 22 N -0.36 -3.30 3.65 -346.28 -1.26 -4.57 16 23 C 0.10 0.33 6.94 86.38 0.60 0.93 16 24 C 0.06 0.29 7.73 71.98 0.56 0.85 16 25 F -0.22 -2.08 17.36 44.97 0.78 -1.30 16 26 C 0.14 1.47 11.25 84.28 0.95 2.42 16 27 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.41 2.78 7.43 -92.71 -0.69 2.09 16 42 H 0.22 0.60 7.50 -2.91 -0.02 0.58 16 43 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.14 -0.22 8.06 -2.39 -0.02 -0.24 16 45 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 47 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -79.19 402.18 2.75 -76.44 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.43 Total: 20.17 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 6.63 Total: -4.11 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.19 Total: -123.69 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.07 Total: -16.23 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -79.19 2.75 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178908400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.063 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds