Wall clock time and date at job start Tue Mar 31 2020 14:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30375 * 125.96977 * 2 1 4 4 N 1.39914 * 109.02406 * 180.28421 * 3 2 1 5 5 C 1.46500 * 125.74148 * 179.73632 * 4 3 2 6 6 C 1.34418 * 108.51404 * 359.71601 * 4 3 2 7 7 F 1.35100 * 126.34265 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.30955 * 359.97438 * 6 4 3 9 9 C 1.47169 * 126.45599 * 180.02562 * 8 6 4 10 10 O 1.21633 * 120.00053 * 90.02536 * 9 8 6 11 11 N 1.34777 * 119.99709 * 270.02220 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72413 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47510 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47271 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46959 * 179.97438 * 17 16 15 19 19 C 1.36936 * 119.99757 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99873 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99726 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99700 * 23 21 19 27 27 H 1.09001 * 109.47317 * 270.18807 * 1 2 3 28 28 H 1.09003 * 109.47009 * 30.19142 * 1 2 3 29 29 H 1.09000 * 109.47410 * 150.18275 * 1 2 3 30 30 H 1.09000 * 109.46970 * 269.97398 * 5 4 3 31 31 H 1.08997 * 109.47391 * 29.97265 * 5 4 3 32 32 H 1.09001 * 109.47052 * 149.97932 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 36 36 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 37 37 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 38 38 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 39 39 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 40 40 H 1.09008 * 109.47165 * 300.00083 * 15 14 13 41 41 H 1.08998 * 109.47285 * 60.00156 * 15 14 13 42 42 H 1.09000 * 109.46793 * 300.00282 * 16 15 14 43 43 H 1.08998 * 109.47049 * 59.99608 * 16 15 14 44 44 H 1.08994 * 109.47190 * 299.99512 * 17 16 15 45 45 H 1.08998 * 109.47408 * 59.99824 * 17 16 15 46 46 H 0.97000 * 120.00380 * 0.02562 * 18 17 16 47 47 H 0.97005 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7762 1.5354 -0.0141 6 6 3.6479 -0.6963 -0.0043 7 9 4.7576 -1.4668 -0.0094 8 6 2.3374 -1.1444 0.0043 9 6 1.8930 -2.5474 0.0100 10 8 1.7150 -3.1247 1.0657 11 7 1.6832 -3.1926 -1.1546 12 6 1.2466 -4.5910 -1.1489 13 6 1.0903 -5.0823 -2.5894 14 6 0.6349 -6.5429 -2.5835 15 6 0.4792 -7.0345 -4.0240 16 6 0.0232 -8.4950 -4.0181 17 6 -0.1319 -8.9866 -5.4586 18 7 -0.5679 -10.3852 -5.4529 19 6 -0.7749 -11.0426 -6.6362 20 1 -0.6172 -10.5300 -7.5735 21 6 -1.1875 -12.3680 -6.6308 22 7 -1.3870 -12.9998 -7.7681 23 14 -1.4610 -13.2546 -5.0095 24 1 -2.8703 -13.0732 -4.5778 25 1 -1.1788 -14.7021 -5.1831 26 1 -0.5514 -12.6931 -3.9787 27 1 -0.3634 0.0034 1.0277 28 1 -0.3633 0.8883 -0.5168 29 1 -0.3634 -0.8916 -0.5110 30 1 5.0600 1.7537 -1.0437 31 1 4.5284 2.4644 0.4992 32 1 5.6073 1.0487 0.4963 33 1 1.8255 -2.7323 -1.9965 34 1 1.9895 -5.2015 -0.6354 35 1 0.2904 -4.6710 -0.6319 36 1 0.3475 -4.4718 -3.1028 37 1 2.0466 -5.0024 -3.1065 38 1 1.3780 -7.1532 -2.0702 39 1 -0.3213 -6.6234 -2.0664 40 1 -0.2638 -6.4244 -4.5378 41 1 1.4355 -6.9542 -4.5407 42 1 0.7658 -9.1053 -3.5042 43 1 -0.9332 -8.5749 -3.5015 44 1 -0.8743 -8.3764 -5.9728 45 1 0.8247 -8.9067 -5.9749 46 1 -0.7106 -10.8454 -4.6111 47 1 -1.6757 -13.9259 -7.7643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180170108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:20 Heat of formation + Delta-G solvation = -10.886540 kcal Electronic energy + Delta-G solvation = -26021.264669 eV Core-core repulsion = 21962.200400 eV Total energy + Delta-G solvation = -4059.064269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.87688 -41.94740 -39.64898 -36.90042 -35.51434 -34.78490 -34.01087 -32.02054 -31.09745 -30.39966 -29.90323 -27.45914 -26.45579 -24.26542 -22.88688 -22.00385 -21.40603 -21.12497 -20.83593 -20.42749 -18.50952 -17.51824 -17.44941 -17.24909 -16.67499 -16.28256 -16.17332 -15.28455 -15.14627 -14.88858 -14.53667 -14.26639 -14.17507 -14.08391 -13.85747 -13.81681 -13.28621 -13.23920 -12.98697 -12.92786 -12.70135 -12.67642 -12.41381 -11.80657 -11.63099 -11.47411 -11.43772 -11.00086 -10.84961 -10.77542 -10.50936 -10.35422 -10.22211 -10.05293 -9.94062 -9.55691 -9.42887 -9.32292 -8.85622 -7.18876 -5.73858 -3.08804 0.77978 1.31662 1.68528 2.13085 2.87249 3.23991 3.40266 3.43388 3.47685 3.74856 4.16963 4.41360 4.45537 4.50437 4.55441 4.62371 4.65326 4.70963 4.72264 4.90646 5.07898 5.15772 5.17636 5.25644 5.30389 5.33599 5.50958 5.56565 5.59578 5.66639 5.76247 5.81880 5.88769 6.04021 6.05798 6.07844 6.14197 6.23510 6.26763 6.40200 6.77422 6.81287 6.85436 7.10232 7.82949 8.03403 8.45609 9.25387 9.98026 10.18439 11.44725 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.001465 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.479362 B =19112.259318 C =19216.733857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.270 5.270 4 N -0.373 5.373 5 C 0.091 3.909 6 C 0.296 3.704 7 F -0.087 7.087 8 C -0.293 4.293 9 C 0.598 3.402 10 O -0.527 6.527 11 N -0.719 5.719 12 C 0.116 3.884 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 34.359 17.952 40.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.092 5.092 4 N -0.157 5.157 5 C -0.049 4.049 6 C 0.148 3.852 7 F -0.066 7.066 8 C -0.309 4.309 9 C 0.381 3.619 10 O -0.402 6.402 11 N -0.371 5.371 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.203 35.204 18.472 41.304 hybrid contribution 0.436 -1.506 0.636 1.692 sum 11.639 33.698 19.108 40.449 Atomic orbital electron populations 1.20348 0.84982 1.04227 1.04252 1.22233 0.97277 0.87890 0.95883 1.77351 0.84105 1.21124 1.26650 1.48716 1.07403 1.02606 1.57019 1.22117 0.83521 0.94729 1.04556 1.17796 0.83329 0.81912 1.02155 1.91679 1.49666 1.71521 1.93740 1.19666 0.90382 0.95591 1.25271 1.17010 0.76997 0.83951 0.83902 1.90830 1.50658 1.67592 1.31102 1.46046 1.68925 1.13753 1.08356 1.21510 1.00650 0.80552 0.97969 1.21829 1.02393 0.97644 0.95018 1.21518 1.01792 0.94127 0.98004 1.21492 1.01595 0.96380 0.95687 1.21781 1.01219 0.95247 0.98613 1.20636 0.97158 0.85854 0.93465 1.42746 1.83228 1.09167 1.05261 1.19095 1.38038 0.94310 0.85973 0.89277 1.24684 1.01602 0.96643 0.96387 1.69708 1.53245 1.11388 1.24054 0.86516 0.78090 0.79310 0.84457 1.21078 1.21728 1.20328 0.89297 0.89688 0.89813 0.89564 0.87966 0.88887 0.76340 0.91200 0.91034 0.91107 0.91224 0.91649 0.91588 0.91881 0.91922 0.92155 0.92115 0.95707 0.95778 0.80716 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.28 36.00 0.37 -0.05 16 2 C 0.13 1.09 7.26 -82.01 -0.60 0.49 16 3 N -0.27 -2.28 12.49 33.91 0.42 -1.86 16 4 N -0.37 -2.67 3.98 -67.94 -0.27 -2.94 16 5 C 0.09 0.25 11.43 59.85 0.68 0.93 16 6 C 0.30 2.51 8.70 -16.32 -0.14 2.37 16 7 F -0.09 -0.73 17.31 2.25 0.04 -0.69 16 8 C -0.29 -2.70 5.89 -104.97 -0.62 -3.32 16 9 C 0.60 6.27 7.35 -12.63 -0.09 6.17 16 10 O -0.53 -7.59 17.11 5.25 0.09 -7.50 16 11 N -0.72 -5.64 5.55 -61.46 -0.34 -5.98 16 12 C 0.12 0.95 5.67 -4.04 -0.02 0.92 16 13 C -0.13 -0.94 5.33 -26.73 -0.14 -1.08 16 14 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 15 C -0.11 -1.28 5.21 -26.73 -0.14 -1.41 16 16 C -0.13 -1.95 5.33 -26.73 -0.14 -2.10 16 17 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 18 N -0.76 -18.70 5.41 -59.92 -0.32 -19.02 16 19 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 22 N -0.94 -29.90 13.97 55.49 0.78 -29.13 16 23 Si 0.89 22.54 27.74 -169.99 -4.71 17.83 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.40 8.01 -51.93 -0.42 -0.01 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 33 H 0.40 2.23 8.46 -40.82 -0.35 1.89 16 34 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.62 5.53 -40.82 -0.23 8.40 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -36.86 400.96 -7.31 -44.17 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.76 Total: 1.62 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.26 Total: -2.55 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.26 Total: -58.92 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.04 Total: -0.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.86 -7.31 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180170108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.283 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds