Wall clock time and date at job start Tue Mar 31 2020 14:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30375 * 125.96977 * 2 1 4 4 N 1.39914 * 109.02406 * 180.28421 * 3 2 1 5 5 C 1.46500 * 125.74148 * 179.73632 * 4 3 2 6 6 C 1.34418 * 108.51404 * 359.71601 * 4 3 2 7 7 F 1.35100 * 126.34265 * 179.97438 * 6 4 3 8 8 C 1.38502 * 107.30955 * 359.97438 * 6 4 3 9 9 C 1.47169 * 126.45599 * 180.02562 * 8 6 4 10 10 O 1.21633 * 120.00053 * 90.02536 * 9 8 6 11 11 N 1.34777 * 119.99709 * 270.02220 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72413 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47510 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47271 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46959 * 179.97438 * 17 16 15 19 19 C 1.36936 * 119.99757 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99873 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99726 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99700 * 23 21 19 27 27 H 1.09001 * 109.47317 * 270.18807 * 1 2 3 28 28 H 1.09003 * 109.47009 * 30.19142 * 1 2 3 29 29 H 1.09000 * 109.47410 * 150.18275 * 1 2 3 30 30 H 1.09000 * 109.46970 * 269.97398 * 5 4 3 31 31 H 1.08997 * 109.47391 * 29.97265 * 5 4 3 32 32 H 1.09001 * 109.47052 * 149.97932 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 36 36 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 37 37 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 38 38 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 39 39 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 40 40 H 1.09008 * 109.47165 * 300.00083 * 15 14 13 41 41 H 1.08998 * 109.47285 * 60.00156 * 15 14 13 42 42 H 1.09000 * 109.46793 * 300.00282 * 16 15 14 43 43 H 1.08998 * 109.47049 * 59.99608 * 16 15 14 44 44 H 1.08994 * 109.47190 * 299.99512 * 17 16 15 45 45 H 1.08998 * 109.47408 * 59.99824 * 17 16 15 46 46 H 0.97000 * 120.00380 * 0.02562 * 18 17 16 47 47 H 0.97005 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7762 1.5354 -0.0141 6 6 3.6479 -0.6963 -0.0043 7 9 4.7576 -1.4668 -0.0094 8 6 2.3374 -1.1444 0.0043 9 6 1.8930 -2.5474 0.0100 10 8 1.7150 -3.1247 1.0657 11 7 1.6832 -3.1926 -1.1546 12 6 1.2466 -4.5910 -1.1489 13 6 1.0903 -5.0823 -2.5894 14 6 0.6349 -6.5429 -2.5835 15 6 0.4792 -7.0345 -4.0240 16 6 0.0232 -8.4950 -4.0181 17 6 -0.1319 -8.9866 -5.4586 18 7 -0.5679 -10.3852 -5.4529 19 6 -0.7749 -11.0426 -6.6362 20 1 -0.6172 -10.5300 -7.5735 21 6 -1.1875 -12.3680 -6.6308 22 7 -1.3870 -12.9998 -7.7681 23 14 -1.4610 -13.2546 -5.0095 24 1 -2.8703 -13.0732 -4.5778 25 1 -1.1788 -14.7021 -5.1831 26 1 -0.5514 -12.6931 -3.9787 27 1 -0.3634 0.0034 1.0277 28 1 -0.3633 0.8883 -0.5168 29 1 -0.3634 -0.8916 -0.5110 30 1 5.0600 1.7537 -1.0437 31 1 4.5284 2.4644 0.4992 32 1 5.6073 1.0487 0.4963 33 1 1.8255 -2.7323 -1.9965 34 1 1.9895 -5.2015 -0.6354 35 1 0.2904 -4.6710 -0.6319 36 1 0.3475 -4.4718 -3.1028 37 1 2.0466 -5.0024 -3.1065 38 1 1.3780 -7.1532 -2.0702 39 1 -0.3213 -6.6234 -2.0664 40 1 -0.2638 -6.4244 -4.5378 41 1 1.4355 -6.9542 -4.5407 42 1 0.7658 -9.1053 -3.5042 43 1 -0.9332 -8.5749 -3.5015 44 1 -0.8743 -8.3764 -5.9728 45 1 0.8247 -8.9067 -5.9749 46 1 -0.7106 -10.8454 -4.6111 47 1 -1.6757 -13.9259 -7.7643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180170108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:19 Heat of formation + Delta-G solvation = -36.767824 kcal Electronic energy + Delta-G solvation = -26022.386966 eV Core-core repulsion = 21962.200400 eV Total energy + Delta-G solvation = -4060.186566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.50604 -42.52694 -40.42921 -37.95579 -36.81821 -35.36044 -35.20176 -33.67403 -32.14690 -31.32891 -30.48964 -28.55322 -27.08242 -25.56966 -23.93021 -23.12675 -22.24422 -22.09783 -21.82117 -21.11724 -19.61352 -19.09406 -18.10635 -17.85853 -17.28178 -17.05594 -16.92219 -16.60262 -16.09311 -15.82061 -15.77790 -15.47809 -15.15603 -14.88080 -14.66318 -14.51777 -14.32031 -14.14142 -13.97543 -13.72834 -13.47277 -13.33372 -13.29950 -13.05002 -13.01446 -12.65814 -12.45253 -12.09731 -12.06331 -11.88096 -11.84197 -11.78806 -11.56293 -11.31018 -11.13439 -10.96634 -10.46843 -10.16586 -9.93544 -9.30267 -8.04009 -5.37734 0.17897 0.83814 1.08931 1.35421 1.37987 1.41768 1.49394 2.19407 2.48221 2.69683 3.24902 3.27324 3.58633 3.70518 3.84791 3.93970 4.04337 4.08311 4.21022 4.25098 4.27186 4.28108 4.33138 4.57082 4.62152 4.63925 4.69801 4.74147 4.79503 4.84709 4.88856 4.99135 5.01519 5.07156 5.17174 5.28813 5.30287 5.33571 5.41805 5.55538 5.57310 5.58343 5.74531 6.20602 6.21075 6.43869 7.07294 7.10783 7.84342 8.03658 9.17568 Molecular weight = 326.19amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.001465 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.479362 B =19112.259318 C =19216.733857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.131 3.869 3 N -0.284 5.284 4 N -0.368 5.368 5 C 0.079 3.921 6 C 0.290 3.710 7 F -0.088 7.088 8 C -0.312 4.312 9 C 0.600 3.400 10 O -0.573 6.573 11 N -0.704 5.704 12 C 0.119 3.881 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.149 3.851 18 N -0.763 5.763 19 C -0.242 4.242 20 H 0.054 0.946 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.251 1.251 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.366 0.634 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 35.896 19.460 42.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 N -0.107 5.107 4 N -0.152 5.152 5 C -0.059 4.059 6 C 0.141 3.859 7 F -0.068 7.068 8 C -0.328 4.328 9 C 0.385 3.615 10 O -0.453 6.453 11 N -0.355 5.355 12 C -0.005 4.005 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.158 4.158 17 C 0.023 3.977 18 N -0.409 5.409 19 C -0.373 4.373 20 H 0.073 0.927 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.786 3.214 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.176 1.176 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.199 0.801 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.637 36.814 19.963 43.465 hybrid contribution 0.371 -1.886 0.058 1.923 sum 12.008 34.928 20.021 42.012 Atomic orbital electron populations 1.20453 0.83435 1.05202 1.04704 1.22591 0.98322 0.87303 0.95323 1.77317 0.84777 1.21438 1.27200 1.49052 1.07937 1.02509 1.55709 1.22516 0.82556 0.94705 1.06130 1.17842 0.83129 0.82609 1.02304 1.91671 1.49638 1.71671 1.93771 1.19675 0.91111 0.95244 1.26799 1.17196 0.76276 0.84343 0.83720 1.90801 1.52984 1.68717 1.32751 1.45948 1.67590 1.13623 1.08354 1.21462 1.00039 0.80424 0.98543 1.21708 1.03189 0.96487 0.94303 1.21447 1.02036 0.95190 0.96372 1.21429 1.01827 0.93894 0.97300 1.21701 1.01668 0.97502 0.94977 1.20874 0.96477 0.83395 0.96906 1.42798 1.83257 1.10955 1.03844 1.19096 1.37065 0.94580 0.86541 0.92747 1.25573 1.01953 0.97628 1.00515 1.69895 1.54890 1.11771 1.26901 0.85341 0.78674 0.77408 0.79964 1.20217 1.22036 1.17602 0.89041 0.88173 0.89345 0.87844 0.86784 0.87453 0.74805 0.92321 0.91519 0.89812 0.90397 0.91779 0.91381 0.91247 0.91536 0.92059 0.91754 0.95917 0.96144 0.80078 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.28 71.23 0.73 -0.03 16 2 C 0.13 2.01 7.26 43.55 0.32 2.33 16 3 N -0.28 -4.49 12.49 -46.64 -0.58 -5.07 16 4 N -0.37 -4.81 3.98 -368.86 -1.47 -6.28 16 5 C 0.08 0.29 11.43 127.77 1.46 1.75 16 6 C 0.29 4.71 8.70 84.36 0.73 5.45 16 7 F -0.09 -1.41 17.31 44.97 0.78 -0.63 16 8 C -0.31 -5.59 5.89 -20.09 -0.12 -5.71 16 9 C 0.60 12.36 7.35 86.59 0.64 12.99 16 10 O -0.57 -16.75 17.11 -4.14 -0.07 -16.82 16 11 N -0.70 -10.14 5.55 -466.61 -2.59 -12.73 16 12 C 0.12 1.75 5.67 86.38 0.49 2.24 16 13 C -0.12 -1.39 5.33 30.59 0.16 -1.23 16 14 C -0.11 -1.75 5.21 30.59 0.16 -1.59 16 15 C -0.11 -2.11 5.21 30.60 0.16 -1.95 16 16 C -0.12 -3.33 5.33 30.59 0.16 -3.17 16 17 C 0.15 5.70 6.26 86.38 0.54 6.24 16 18 N -0.76 -36.84 5.41 -343.47 -1.86 -38.70 16 19 C -0.24 -14.28 10.47 84.03 0.88 -13.40 16 20 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 22 N -0.98 -64.15 13.97 21.65 0.30 -63.84 16 23 Si 0.96 46.15 27.74 68.60 1.90 48.05 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.74 8.01 -2.39 -0.02 0.72 16 30 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.42 3.84 8.46 -92.71 -0.78 3.05 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.37 16.70 5.53 -92.71 -0.51 16.18 16 47 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 Total: -1.00 -80.67 400.96 2.82 -77.85 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.38 Total: 17.70 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.78 Total: 0.47 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.20 Total: -126.62 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.07 Total: -16.82 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.78 Total: -0.63 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.05 kcal Total: -80.67 2.82 -77.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180170108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.084 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds