Wall clock time and date at job start Tue Mar 31 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00255 * 2 1 4 4 C 1.52997 * 109.47254 * 293.95367 * 3 2 1 5 5 C 1.54271 * 110.03098 * 292.16681 * 4 3 2 6 6 C 1.54894 * 104.19361 * 217.10075 * 5 4 3 7 7 C 1.54890 * 102.74813 * 37.94443 * 6 5 4 8 8 C 1.53870 * 110.03686 * 174.99996 * 4 3 2 9 9 C 1.46901 * 111.00040 * 123.95736 * 2 1 3 10 10 H 1.09004 * 110.88286 * 292.16534 * 9 2 1 11 11 C 1.55148 * 111.00555 * 56.04233 * 9 2 1 12 12 C 1.54319 * 102.94543 * 153.57774 * 11 9 2 13 13 N 1.47023 * 107.26862 * 337.81159 * 12 11 9 14 14 C 1.34776 * 125.64846 * 178.91801 * 13 12 11 15 15 O 1.21281 * 120.00131 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99915 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47200 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00302 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99974 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00329 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99770 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47438 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46976 * 119.99845 * 22 20 18 25 25 H 1.48503 * 109.46987 * 239.99676 * 22 20 18 26 26 C 1.47419 * 108.70357 * 358.93528 * 13 12 11 27 27 H 1.09005 * 109.46528 * 59.99744 * 1 2 3 28 28 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47044 * 300.00388 * 1 2 3 30 30 H 1.09002 * 109.47043 * 53.95437 * 3 2 1 31 31 H 1.09001 * 109.47354 * 173.95499 * 3 2 1 32 32 H 1.09000 * 110.01726 * 53.60487 * 4 3 2 33 33 H 1.08994 * 110.48979 * 335.78043 * 5 4 3 34 34 H 1.08998 * 110.48413 * 98.43100 * 5 4 3 35 35 H 1.08998 * 110.76076 * 279.63003 * 6 5 4 36 36 H 1.09006 * 110.75485 * 156.25502 * 6 5 4 37 37 H 1.09000 * 110.48648 * 203.37650 * 7 6 5 38 38 H 1.09005 * 110.48822 * 80.72988 * 7 6 5 39 39 H 1.08995 * 110.03364 * 238.57226 * 8 4 3 40 40 H 1.08998 * 110.02923 * 359.97438 * 8 4 3 41 41 H 1.09004 * 110.72456 * 271.94562 * 11 9 2 42 42 H 1.08997 * 110.72390 * 35.03879 * 11 9 2 43 43 H 1.09010 * 109.88414 * 97.22112 * 12 11 9 44 44 H 1.08999 * 109.88684 * 218.23416 * 12 11 9 45 45 H 1.08999 * 109.47255 * 299.99792 * 16 14 13 46 46 H 1.09003 * 109.47714 * 60.00240 * 16 14 13 47 47 H 0.97006 * 119.99912 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36648 * 265.29285 * 26 13 12 49 49 H 1.09002 * 110.36704 * 142.96935 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.3972 1.3999 -2.4851 6 6 2.7468 2.5815 -3.4236 7 6 3.0824 3.7204 -2.4289 8 6 2.0673 3.5327 -1.2826 9 6 1.9955 -0.7661 1.1375 10 1 1.7760 -0.2633 2.0795 11 6 1.4395 -2.2145 1.1376 12 6 2.5362 -3.0057 1.8810 13 7 3.7814 -2.2314 1.7742 14 6 4.9686 -2.5749 2.3117 15 8 5.9338 -1.8565 2.1597 16 6 5.0967 -3.8518 3.1018 17 16 6.7999 -4.0302 3.6882 18 6 6.6673 -5.5597 4.5528 19 1 5.7204 -6.0778 4.5914 20 6 7.7793 -6.0981 5.1852 21 7 8.9331 -5.4664 5.1386 22 14 7.6384 -7.7193 6.1024 23 1 6.2448 -8.2230 6.0064 24 1 8.5661 -8.7106 5.5008 25 1 7.9924 -7.5129 7.5298 26 6 3.5162 -1.0167 0.9821 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3444 0.1082 32 1 0.5574 1.9894 -1.4901 33 1 3.3056 0.9191 -2.1225 34 1 1.7621 0.6790 -2.9998 35 1 1.8907 2.8493 -4.0429 36 1 3.6119 2.3410 -4.0416 37 1 2.9474 4.6927 -2.9027 38 1 4.1015 3.6142 -2.0571 39 1 1.2047 4.1807 -1.4379 40 1 2.5376 3.7601 -0.3260 41 1 0.4942 -2.2648 1.6781 42 1 1.3192 -2.5815 0.1184 43 1 2.2620 -3.1239 2.9294 44 1 2.6648 -3.9846 1.4191 45 1 4.4203 -3.8200 3.9559 46 1 4.8402 -4.6996 2.4665 47 1 9.7104 -5.8429 5.5802 48 1 3.7680 -1.1842 -0.0651 49 1 4.0821 -0.1739 1.3791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188957893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:38 Heat of formation + Delta-G solvation = -42.645347 kcal Electronic energy + Delta-G solvation = -25563.177065 eV Core-core repulsion = 22036.656056 eV Total energy + Delta-G solvation = -3526.521010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11807 -38.96274 -37.60101 -35.62471 -32.42108 -31.51745 -30.05279 -29.59858 -28.88948 -28.24023 -26.13458 -25.47290 -23.75807 -22.68798 -20.97382 -20.31309 -19.81252 -19.21022 -17.70143 -17.04083 -16.58208 -16.12607 -15.48389 -15.41425 -14.89668 -14.79881 -14.64193 -14.40084 -14.10339 -13.74735 -13.57747 -13.56514 -13.35476 -12.85113 -12.61194 -12.48538 -12.21721 -12.03818 -11.83724 -11.71621 -11.39473 -11.33660 -11.23890 -11.21147 -11.06628 -11.04545 -11.00108 -10.84466 -10.80608 -10.74964 -10.51139 -9.79721 -9.39245 -9.06567 -8.66606 -8.46531 -8.21580 -6.49079 -6.20842 -3.91257 2.87046 3.08657 3.22070 3.25501 3.31298 3.51025 3.73097 4.16956 4.21802 4.34966 4.37335 4.46817 4.50558 4.80988 4.86908 4.98879 5.03740 5.09197 5.10592 5.14279 5.16124 5.20556 5.27212 5.31160 5.38746 5.41668 5.50494 5.54446 5.55481 5.57489 5.62317 5.65386 5.66185 5.73428 5.76796 5.81567 5.84926 5.91620 5.97194 6.03117 6.08285 6.15823 6.20098 6.42442 6.72026 6.78536 7.60719 7.69827 8.36398 8.58099 9.24494 10.86667 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002189 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.790854 B =12790.831755 C =13584.499194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.528 5.528 3 C 0.058 3.942 4 C -0.088 4.088 5 C -0.106 4.106 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.121 4.121 9 C 0.068 3.932 10 H 0.058 0.942 11 C -0.122 4.122 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.549 3.451 15 O -0.516 6.516 16 C -0.146 4.146 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.120 3.880 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.075 0.925 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.055 14.450 -13.930 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.252 5.252 3 C -0.070 4.070 4 C -0.107 4.107 5 C -0.143 4.143 6 C -0.167 4.167 7 C -0.163 4.163 8 C -0.160 4.160 9 C -0.041 4.041 10 H 0.075 0.925 11 C -0.161 4.161 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.337 3.663 15 O -0.390 6.390 16 C -0.296 4.296 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.004 4.004 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.187 15.256 -14.479 28.470 hybrid contribution -1.588 -1.488 1.586 2.693 sum -20.775 13.768 -12.893 28.061 Atomic orbital electron populations 1.22435 0.87258 1.02264 1.00673 1.61947 1.07813 1.13658 1.41785 1.22361 1.00618 0.87591 0.96394 1.21795 1.00171 0.93950 0.94761 1.22282 1.00248 0.96780 0.95015 1.22549 1.00916 0.95671 0.97559 1.22355 0.99295 0.98496 0.96126 1.22186 0.98928 0.95769 0.99071 1.22793 0.94912 0.94176 0.92264 0.92460 1.22709 0.97656 0.93811 1.01877 1.21970 0.83737 0.95587 1.00720 1.48421 1.09482 1.23690 1.54779 1.20021 0.80677 0.87164 0.78404 1.90708 1.36417 1.52961 1.58903 1.23498 1.07961 0.96526 1.01643 1.85405 1.01224 1.29835 1.67040 1.22896 0.99028 1.07697 1.38560 0.90885 1.24999 0.94496 0.98183 0.95977 1.70033 1.00219 1.38338 1.41683 0.86111 0.78301 0.81888 0.79158 1.19620 1.20554 1.20582 1.22049 0.93664 0.88184 0.96458 0.91081 0.91067 0.95726 0.94845 0.90253 0.91067 0.91186 0.91719 0.91901 0.91714 0.92009 0.91537 0.92004 0.91751 0.90305 0.89416 0.91334 0.91024 0.89346 0.89269 0.92246 0.90657 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.10 60.07 0.55 0.69 16 2 N -0.53 -4.38 4.48 -232.31 -1.04 -5.42 16 3 C 0.06 0.47 3.92 -3.83 -0.01 0.46 16 4 C -0.09 -0.63 2.87 -89.50 -0.26 -0.89 16 5 C -0.11 -0.82 6.19 -25.07 -0.16 -0.97 16 6 C -0.13 -0.91 6.91 -24.74 -0.17 -1.08 16 7 C -0.13 -0.86 6.83 -25.07 -0.17 -1.03 16 8 C -0.12 -0.82 6.46 -25.62 -0.17 -0.99 16 9 C 0.07 0.65 2.71 -65.57 -0.18 0.47 16 10 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 11 C -0.12 -1.03 5.07 -24.90 -0.13 -1.15 16 12 C 0.10 1.15 6.49 -3.07 -0.02 1.13 16 13 N -0.63 -9.39 3.33 -170.52 -0.57 -9.96 16 14 C 0.55 10.93 7.87 -10.99 -0.09 10.84 16 15 O -0.52 -12.28 16.12 5.56 0.09 -12.19 16 16 C -0.15 -3.05 5.35 36.01 0.19 -2.86 16 17 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.12 1.53 5.61 -2.53 -0.01 1.52 16 27 H 0.07 0.43 6.36 -51.93 -0.33 0.10 16 28 H 0.07 0.43 6.80 -51.93 -0.35 0.08 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.08 0.74 6.82 -51.93 -0.35 0.38 16 32 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16 33 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 41 H 0.08 0.52 8.03 -51.93 -0.42 0.11 16 42 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -33.62 394.60 -11.36 -44.98 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.87 Total: -3.41 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.42 Total: -6.92 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.87 Total: -41.00 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.62 -11.36 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188957893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.337 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds