Wall clock time and date at job start Tue Mar 31 2020 14:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00255 * 2 1 4 4 C 1.52997 * 109.47254 * 293.95367 * 3 2 1 5 5 C 1.54271 * 110.03098 * 292.16681 * 4 3 2 6 6 C 1.54894 * 104.19361 * 217.10075 * 5 4 3 7 7 C 1.54890 * 102.74813 * 37.94443 * 6 5 4 8 8 C 1.53870 * 110.03686 * 174.99996 * 4 3 2 9 9 C 1.46901 * 111.00040 * 123.95736 * 2 1 3 10 10 H 1.09004 * 110.88286 * 292.16534 * 9 2 1 11 11 C 1.55148 * 111.00555 * 56.04233 * 9 2 1 12 12 C 1.54319 * 102.94543 * 153.57774 * 11 9 2 13 13 N 1.47023 * 107.26862 * 337.81159 * 12 11 9 14 14 C 1.34776 * 125.64846 * 178.91801 * 13 12 11 15 15 O 1.21281 * 120.00131 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99915 * 0.02562 * 14 13 12 17 17 S 1.81005 * 109.47200 * 180.02562 * 16 14 13 18 18 C 1.76196 * 100.00302 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99974 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00329 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99770 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47438 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46976 * 119.99845 * 22 20 18 25 25 H 1.48503 * 109.46987 * 239.99676 * 22 20 18 26 26 C 1.47419 * 108.70357 * 358.93528 * 13 12 11 27 27 H 1.09005 * 109.46528 * 59.99744 * 1 2 3 28 28 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47044 * 300.00388 * 1 2 3 30 30 H 1.09002 * 109.47043 * 53.95437 * 3 2 1 31 31 H 1.09001 * 109.47354 * 173.95499 * 3 2 1 32 32 H 1.09000 * 110.01726 * 53.60487 * 4 3 2 33 33 H 1.08994 * 110.48979 * 335.78043 * 5 4 3 34 34 H 1.08998 * 110.48413 * 98.43100 * 5 4 3 35 35 H 1.08998 * 110.76076 * 279.63003 * 6 5 4 36 36 H 1.09006 * 110.75485 * 156.25502 * 6 5 4 37 37 H 1.09000 * 110.48648 * 203.37650 * 7 6 5 38 38 H 1.09005 * 110.48822 * 80.72988 * 7 6 5 39 39 H 1.08995 * 110.03364 * 238.57226 * 8 4 3 40 40 H 1.08998 * 110.02923 * 359.97438 * 8 4 3 41 41 H 1.09004 * 110.72456 * 271.94562 * 11 9 2 42 42 H 1.08997 * 110.72390 * 35.03879 * 11 9 2 43 43 H 1.09010 * 109.88414 * 97.22112 * 12 11 9 44 44 H 1.08999 * 109.88684 * 218.23416 * 12 11 9 45 45 H 1.08999 * 109.47255 * 299.99792 * 16 14 13 46 46 H 1.09003 * 109.47714 * 60.00240 * 16 14 13 47 47 H 0.97006 * 119.99912 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.36648 * 265.29285 * 26 13 12 49 49 H 1.09002 * 110.36704 * 142.96935 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.3972 1.3999 -2.4851 6 6 2.7468 2.5815 -3.4236 7 6 3.0824 3.7204 -2.4289 8 6 2.0673 3.5327 -1.2826 9 6 1.9955 -0.7661 1.1375 10 1 1.7760 -0.2633 2.0795 11 6 1.4395 -2.2145 1.1376 12 6 2.5362 -3.0057 1.8810 13 7 3.7814 -2.2314 1.7742 14 6 4.9686 -2.5749 2.3117 15 8 5.9338 -1.8565 2.1597 16 6 5.0967 -3.8518 3.1018 17 16 6.7999 -4.0302 3.6882 18 6 6.6673 -5.5597 4.5528 19 1 5.7204 -6.0778 4.5914 20 6 7.7793 -6.0981 5.1852 21 7 8.9331 -5.4664 5.1386 22 14 7.6384 -7.7193 6.1024 23 1 6.2448 -8.2230 6.0064 24 1 8.5661 -8.7106 5.5008 25 1 7.9924 -7.5129 7.5298 26 6 3.5162 -1.0167 0.9821 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3444 0.1082 32 1 0.5574 1.9894 -1.4901 33 1 3.3056 0.9191 -2.1225 34 1 1.7621 0.6790 -2.9998 35 1 1.8907 2.8493 -4.0429 36 1 3.6119 2.3410 -4.0416 37 1 2.9474 4.6927 -2.9027 38 1 4.1015 3.6142 -2.0571 39 1 1.2047 4.1807 -1.4379 40 1 2.5376 3.7601 -0.3260 41 1 0.4942 -2.2648 1.6781 42 1 1.3192 -2.5815 0.1184 43 1 2.2620 -3.1239 2.9294 44 1 2.6648 -3.9846 1.4191 45 1 4.4203 -3.8200 3.9559 46 1 4.8402 -4.6996 2.4665 47 1 9.7104 -5.8429 5.5802 48 1 3.7680 -1.1842 -0.0651 49 1 4.0821 -0.1739 1.3791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188957893.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:37 Heat of formation + Delta-G solvation = -63.423056 kcal Electronic energy + Delta-G solvation = -25564.078054 eV Core-core repulsion = 22036.656056 eV Total energy + Delta-G solvation = -3527.421999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.22196 -39.87328 -38.62040 -36.55683 -34.59727 -32.62757 -31.17379 -30.38981 -29.50393 -29.35879 -27.68205 -26.79441 -24.74198 -23.52059 -21.59772 -21.07446 -20.76243 -20.31506 -19.55911 -18.13518 -17.85792 -16.91315 -16.89125 -16.71025 -16.22637 -15.98852 -15.66440 -15.57325 -15.22585 -14.85892 -14.50365 -14.39085 -14.26411 -14.11888 -13.79602 -13.74479 -13.34625 -13.16143 -12.97084 -12.91786 -12.64949 -12.55878 -12.47558 -12.06093 -11.97343 -11.94144 -11.81904 -11.73456 -11.70130 -11.47859 -11.43178 -11.16732 -11.11098 -11.00980 -10.29574 -9.74265 -9.31454 -8.69808 -8.35672 -6.14680 1.21862 1.41373 1.43711 1.52364 1.56489 2.01821 2.26087 2.89102 2.98529 3.19059 3.39807 3.63574 3.75872 3.79003 3.83817 3.90114 4.04655 4.19009 4.25289 4.30417 4.35968 4.41958 4.42769 4.54954 4.60823 4.62440 4.66643 4.72157 4.77218 4.79867 4.84341 4.87543 4.94573 4.95095 4.97479 5.09375 5.13835 5.14687 5.17766 5.28820 5.31068 5.41068 5.42768 5.50790 5.59725 6.07366 6.09734 6.19176 6.35752 7.05333 7.07041 8.73980 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.002189 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.790854 B =12790.831755 C =13584.499194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.060 3.940 4 C -0.082 4.082 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.121 4.121 9 C 0.079 3.921 10 H 0.056 0.944 11 C -0.108 4.108 12 C 0.092 3.908 13 N -0.617 5.617 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.117 4.117 17 S -0.153 6.153 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.118 3.882 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.271 0.729 48 H 0.071 0.929 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.637 13.452 -14.154 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.256 5.256 3 C -0.068 4.068 4 C -0.100 4.100 5 C -0.142 4.142 6 C -0.165 4.165 7 C -0.165 4.165 8 C -0.159 4.159 9 C -0.031 4.031 10 H 0.074 0.926 11 C -0.146 4.146 12 C -0.031 4.031 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.447 6.447 16 C -0.268 4.268 17 S 0.074 5.926 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.005 4.005 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.843 14.265 -14.728 30.695 hybrid contribution -0.560 -1.087 1.561 1.984 sum -23.403 13.178 -13.166 29.912 Atomic orbital electron populations 1.22508 0.85566 1.03259 1.01261 1.61941 1.09193 1.13471 1.40980 1.22320 0.99500 0.87855 0.97113 1.21756 1.00583 0.93917 0.93771 1.22236 0.99462 0.97051 0.95463 1.22549 1.01213 0.95296 0.97483 1.22369 0.98803 0.99014 0.96282 1.22192 0.99244 0.95724 0.98727 1.22638 0.92213 0.95466 0.92739 0.92566 1.22702 0.97627 0.91810 1.02428 1.22364 0.82474 0.96020 1.02199 1.48367 1.09259 1.24580 1.52991 1.19824 0.81602 0.86532 0.78688 1.90685 1.38623 1.54289 1.61111 1.23282 1.03008 0.97962 1.02591 1.85617 1.08055 1.30874 1.68075 1.23214 0.99723 1.07567 1.38637 0.89820 1.26169 0.93876 1.02468 0.96786 1.70199 1.01255 1.40532 1.42843 0.84871 0.79090 0.76311 0.77453 1.17896 1.19894 1.19903 1.22153 0.96288 0.86574 0.95515 0.90247 0.89874 0.95377 0.94669 0.92196 0.89981 0.93166 0.91587 0.90856 0.92031 0.91037 0.92634 0.90825 0.92262 0.87341 0.88595 0.90138 0.89994 0.87437 0.87445 0.91970 0.91074 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.10 127.69 1.16 1.38 16 2 N -0.53 -7.83 4.48 -888.89 -3.98 -11.81 16 3 C 0.06 0.93 3.92 86.30 0.34 1.27 16 4 C -0.08 -1.06 2.87 -10.07 -0.03 -1.09 16 5 C -0.10 -1.55 6.19 31.67 0.20 -1.36 16 6 C -0.13 -1.69 6.91 31.89 0.22 -1.47 16 7 C -0.13 -1.68 6.83 31.67 0.22 -1.46 16 8 C -0.12 -1.51 6.46 31.32 0.20 -1.31 16 9 C 0.08 1.36 2.71 46.30 0.13 1.49 16 10 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 11 C -0.11 -1.43 5.07 31.78 0.16 -1.27 16 12 C 0.09 1.78 6.49 86.73 0.56 2.34 16 13 N -0.62 -18.12 3.33 -811.80 -2.70 -20.82 16 14 C 0.55 22.04 7.87 87.66 0.69 22.73 16 15 O -0.57 -28.39 16.12 -3.03 -0.05 -28.44 16 16 C -0.12 -4.90 5.35 71.24 0.38 -4.52 16 17 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 18 C -0.54 -31.41 9.50 67.95 0.65 -30.76 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 22 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.12 3.02 5.61 86.86 0.49 3.50 16 27 H 0.08 0.70 6.36 -2.38 -0.02 0.68 16 28 H 0.08 0.66 6.80 -2.39 -0.02 0.64 16 29 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 31 H 0.06 1.16 6.82 -2.39 -0.02 1.14 16 32 H 0.08 0.92 6.32 -2.39 -0.02 0.91 16 33 H 0.05 0.94 7.76 -2.39 -0.02 0.92 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 41 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 42 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 43 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 46 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 47 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.05 1.58 7.71 -2.39 -0.02 1.56 16 Total: -1.00 -76.06 394.60 1.14 -74.92 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.90 Total: 15.93 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 5.83 Total: -9.39 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -6.40 Total: -88.96 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -76.06 1.14 -74.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188957893.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.492 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds