Wall clock time and date at job start Tue Mar 31 2020 14:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00432 * 2 1 4 4 C 1.46894 * 111.00033 * 123.95643 * 2 1 3 5 5 C 1.53004 * 109.47157 * 169.99633 * 4 2 1 6 6 C 1.53008 * 109.47172 * 179.97438 * 5 4 2 7 7 O 1.42894 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.35597 * 117.00222 * 180.02562 * 7 6 5 9 9 C 1.39131 * 119.53011 * 179.97438 * 8 7 6 10 10 C 1.38021 * 119.26720 * 179.72387 * 9 8 7 11 11 C 1.40209 * 118.36033 * 0.55158 * 10 9 8 12 12 C 1.47904 * 120.50290 * 179.73972 * 11 10 9 13 13 C 1.39986 * 119.88251 * 359.44536 * 12 11 10 14 14 C 1.36224 * 120.11667 * 179.71566 * 13 12 11 15 15 C 1.40940 * 119.88202 * 0.54250 * 14 13 12 16 16 C 1.41002 * 120.11725 * 179.71508 * 15 14 13 17 17 H 1.08001 * 119.99726 * 24.71282 * 16 15 14 18 18 C 1.39981 * 120.00549 * 204.72036 * 16 15 14 19 19 N 1.30822 * 119.99643 * 17.95964 * 18 16 15 20 20 Si 1.86796 * 120.00261 * 197.96419 * 18 16 15 21 21 H 1.48501 * 109.46847 * 89.99851 * 20 18 16 22 22 H 1.48496 * 109.47264 * 209.99580 * 20 18 16 23 23 H 1.48500 * 109.47164 * 329.99830 * 20 18 16 24 24 C 1.40952 * 119.77067 * 359.73757 * 15 14 13 25 25 C 1.36216 * 119.87940 * 359.97438 * 24 15 14 26 26 C 1.39519 * 118.99875 * 359.46865 * 11 10 9 27 27 N 1.31722 * 120.62714 * 0.24579 * 26 11 10 28 28 H 1.08999 * 109.46720 * 296.04427 * 1 2 3 29 29 H 1.09005 * 109.46871 * 56.04476 * 1 2 3 30 30 H 1.08999 * 109.47102 * 176.04558 * 1 2 3 31 31 H 1.08999 * 109.47401 * 183.95498 * 3 2 1 32 32 H 1.08998 * 109.47006 * 303.95917 * 3 2 1 33 33 H 1.09000 * 109.46606 * 63.95462 * 3 2 1 34 34 H 1.09004 * 109.47424 * 50.00241 * 4 2 1 35 35 H 1.09003 * 109.47333 * 289.99974 * 4 2 1 36 36 H 1.08994 * 109.46906 * 60.00298 * 5 4 2 37 37 H 1.08998 * 109.47539 * 299.99970 * 5 4 2 38 38 H 1.09007 * 109.46671 * 60.00287 * 6 5 4 39 39 H 1.08998 * 109.46994 * 300.00463 * 6 5 4 40 40 H 1.08007 * 120.36398 * 359.97438 * 9 8 7 41 41 H 1.08002 * 120.82045 * 180.31509 * 10 9 8 42 42 H 1.08005 * 119.93779 * 359.97438 * 13 12 11 43 43 H 1.08009 * 120.05808 * 180.25435 * 14 13 12 44 44 H 0.96992 * 119.99756 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.05401 * 179.97438 * 24 15 14 46 46 H 1.08002 * 119.94176 * 180.02562 * 25 24 15 47 47 H 1.08005 * 119.68424 * 180.27830 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0529 -1.7528 2.1554 7 8 5.4623 -1.9292 1.9994 8 6 6.1074 -2.6207 2.9711 9 6 7.4802 -2.8240 2.8720 10 6 8.1324 -3.5237 3.8670 11 6 7.3764 -4.0152 4.9406 12 6 8.0258 -4.7763 6.0299 13 6 9.4037 -5.0192 5.9856 14 6 10.0078 -5.7147 6.9892 15 6 9.2410 -6.1998 8.0677 16 6 9.8602 -6.9254 9.1061 17 1 10.9116 -6.7858 9.3100 18 6 9.1123 -7.8268 9.8727 19 7 7.9615 -8.2640 9.4302 20 14 9.7575 -8.4052 11.5275 21 1 9.2803 -7.4874 12.5931 22 1 9.2626 -9.7787 11.7992 23 1 11.2423 -8.4092 11.5060 24 6 7.8530 -5.9574 8.1045 25 6 7.2597 -5.2559 7.0988 26 6 6.0031 -3.7707 4.9689 27 7 5.4221 -3.0928 4.0004 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0192 0.9322 37 1 3.7024 -1.4966 0.0450 38 1 3.5664 -2.7275 2.1938 39 1 3.8550 -1.2112 3.0803 40 1 8.0302 -2.4351 2.0276 41 1 9.1981 -3.6917 3.8179 42 1 9.9896 -4.6510 5.1564 43 1 11.0717 -5.8980 6.9561 44 1 7.4431 -8.8883 9.9615 45 1 7.2610 -6.3274 8.9285 46 1 6.1963 -5.0693 7.1261 47 1 5.4108 -4.1404 5.7929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205225708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:26 Heat of formation + Delta-G solvation = 10.222542 kcal Electronic energy + Delta-G solvation = -25426.825726 eV Core-core repulsion = 21767.153288 eV Total energy + Delta-G solvation = -3659.672437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.18723 -38.44697 -37.84957 -37.05139 -34.10509 -32.80898 -32.20075 -31.08368 -29.59160 -28.57839 -27.96555 -26.70807 -25.18661 -23.79404 -22.76353 -22.31122 -21.10233 -20.49453 -20.23359 -18.22149 -17.46790 -16.57009 -16.48008 -15.82160 -15.56583 -15.49924 -15.28386 -15.03862 -14.49295 -14.06547 -13.77519 -13.56636 -13.38070 -13.04048 -12.94281 -12.78686 -12.76697 -12.45423 -12.22366 -12.11532 -11.92866 -11.75679 -11.74215 -11.42636 -11.38973 -11.25119 -11.12422 -10.90606 -10.65330 -10.47773 -9.87557 -9.64648 -9.59675 -9.31289 -9.05362 -8.75701 -8.42226 -7.70942 -7.10413 -6.93805 -4.49628 1.41976 1.65423 2.71591 2.95605 2.98890 3.00836 3.09712 3.13598 3.71728 3.75955 4.19227 4.59337 4.61014 4.70582 4.75662 4.84869 5.00490 5.02546 5.14691 5.22855 5.26449 5.35102 5.40006 5.43691 5.47719 5.49368 5.52663 5.57297 5.58289 5.76817 5.88466 5.96303 5.99433 6.15757 6.28544 6.39398 6.61997 6.62528 6.63119 6.77275 6.86700 6.90108 7.09871 7.20073 7.44039 7.57540 7.75322 7.86549 7.95406 8.08061 8.30284 8.42317 8.65193 8.77174 9.92182 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.001750 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.076404 B =15992.293331 C =16763.044672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.117 4.117 6 C 0.077 3.923 7 O -0.313 6.313 8 C 0.272 3.728 9 C -0.174 4.174 10 C -0.075 4.075 11 C -0.054 4.054 12 C -0.200 4.200 13 C -0.063 4.063 14 C -0.229 4.229 15 C 0.118 3.882 16 C -0.444 4.444 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.776 5.776 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.170 4.170 25 C -0.076 4.076 26 C 0.105 3.895 27 N -0.530 5.530 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.286 0.714 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 11.602 -11.682 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.155 4.155 6 C 0.000 4.000 7 O -0.221 6.221 8 C 0.094 3.906 9 C -0.194 4.194 10 C -0.100 4.100 11 C -0.057 4.057 12 C -0.202 4.202 13 C -0.081 4.081 14 C -0.248 4.248 15 C 0.115 3.885 16 C -0.472 4.472 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.399 5.399 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.189 4.189 25 C -0.095 4.095 26 C -0.051 4.051 27 N -0.252 5.252 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.110 0.890 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.269 11.471 -12.272 19.689 hybrid contribution 0.614 -0.191 1.570 1.697 sum -9.656 11.280 -10.702 18.303 Atomic orbital electron populations 1.22388 0.87065 1.02436 1.00528 1.61932 1.07972 1.14100 1.43160 1.22472 1.01368 0.88614 1.00466 1.21995 0.94856 0.98677 0.91441 1.21532 0.94282 1.01034 0.98620 1.22381 0.79111 1.00282 0.98206 1.86103 1.22728 1.69978 1.43338 1.19618 0.89253 0.93703 0.88068 1.20849 0.91894 1.04847 1.01848 1.21434 1.00268 0.95839 0.92479 1.19835 0.93714 0.97133 0.94976 1.17852 0.93402 1.11242 0.97693 1.20364 0.93267 0.97324 0.97175 1.20673 0.98671 1.08756 0.96723 1.17752 0.92061 0.88358 0.90324 1.19741 0.97361 1.18182 1.11931 0.89892 1.26046 0.94308 0.94959 0.99411 1.69820 1.11555 1.22417 1.36142 0.86223 0.80501 0.78376 0.81238 1.18995 1.20068 1.18362 1.20989 0.95697 1.02460 0.99788 1.20489 0.97176 0.97539 0.94247 1.22465 0.92230 0.95094 0.95346 1.67115 1.40623 1.14239 1.03228 0.95595 0.91285 0.91200 0.90842 0.91391 0.95559 0.90285 0.94383 0.91050 0.90133 0.91874 0.92139 0.85055 0.84557 0.88992 0.88662 0.90339 0.86298 0.88955 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.74 16 2 N -0.55 -4.63 5.02 -251.26 -1.26 -5.89 16 3 C 0.02 0.14 9.32 60.06 0.56 0.70 16 4 C 0.06 0.50 4.96 -3.83 -0.02 0.49 16 5 C -0.12 -1.15 5.51 -26.72 -0.15 -1.29 16 6 C 0.08 0.95 5.30 37.16 0.20 1.14 16 7 O -0.31 -4.74 10.11 -18.49 -0.19 -4.93 16 8 C 0.27 4.58 7.49 -16.99 -0.13 4.45 16 9 C -0.17 -2.75 10.02 -39.33 -0.39 -3.14 16 10 C -0.07 -1.26 9.52 -38.92 -0.37 -1.63 16 11 C -0.05 -1.03 5.90 -104.72 -0.62 -1.65 16 12 C -0.20 -4.27 5.90 -104.63 -0.62 -4.89 16 13 C -0.06 -1.34 9.37 -39.65 -0.37 -1.71 16 14 C -0.23 -5.30 9.73 -39.28 -0.38 -5.68 16 15 C 0.12 2.97 5.57 -106.80 -0.60 2.37 16 16 C -0.44 -11.03 9.03 -37.88 -0.34 -11.37 16 17 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 18 C 0.07 1.71 5.13 -17.33 -0.09 1.63 16 19 N -0.78 -18.80 10.96 55.55 0.61 -18.19 16 20 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 C -0.17 -4.17 8.63 -39.28 -0.34 -4.51 16 25 C -0.08 -1.69 9.37 -39.66 -0.37 -2.06 16 26 C 0.10 1.90 10.60 -17.12 -0.18 1.72 16 27 N -0.53 -9.37 9.18 -12.95 -0.12 -9.49 16 28 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 32 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 36 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.80 8.10 -51.92 -0.42 0.38 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.14 2.04 6.30 -52.49 -0.33 1.71 16 42 H 0.09 1.69 6.24 -52.48 -0.33 1.36 16 43 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 44 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 45 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 46 H 0.09 1.82 6.20 -52.49 -0.33 1.50 16 47 H 0.16 2.62 6.19 -52.48 -0.33 2.30 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -26.91 384.71 -10.74 -37.65 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.92 Total: 7.39 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -3.63 Total: -24.71 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.77 Total: -33.57 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.19 Total: -4.93 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -26.91 -10.74 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205225708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.871 kcal (2) G-P(sol) polarization free energy of solvation -26.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds