Wall clock time and date at job start Tue Mar 31 2020 14:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00432 * 2 1 4 4 C 1.46894 * 111.00033 * 123.95643 * 2 1 3 5 5 C 1.53004 * 109.47157 * 169.99633 * 4 2 1 6 6 C 1.53008 * 109.47172 * 179.97438 * 5 4 2 7 7 O 1.42894 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.35597 * 117.00222 * 180.02562 * 7 6 5 9 9 C 1.39131 * 119.53011 * 179.97438 * 8 7 6 10 10 C 1.38021 * 119.26720 * 179.72387 * 9 8 7 11 11 C 1.40209 * 118.36033 * 0.55158 * 10 9 8 12 12 C 1.47904 * 120.50290 * 179.73972 * 11 10 9 13 13 C 1.39986 * 119.88251 * 359.44536 * 12 11 10 14 14 C 1.36224 * 120.11667 * 179.71566 * 13 12 11 15 15 C 1.40940 * 119.88202 * 0.54250 * 14 13 12 16 16 C 1.41002 * 120.11725 * 179.71508 * 15 14 13 17 17 H 1.08001 * 119.99726 * 24.71282 * 16 15 14 18 18 C 1.39981 * 120.00549 * 204.72036 * 16 15 14 19 19 N 1.30822 * 119.99643 * 17.95964 * 18 16 15 20 20 Si 1.86796 * 120.00261 * 197.96419 * 18 16 15 21 21 H 1.48501 * 109.46847 * 89.99851 * 20 18 16 22 22 H 1.48496 * 109.47264 * 209.99580 * 20 18 16 23 23 H 1.48500 * 109.47164 * 329.99830 * 20 18 16 24 24 C 1.40952 * 119.77067 * 359.73757 * 15 14 13 25 25 C 1.36216 * 119.87940 * 359.97438 * 24 15 14 26 26 C 1.39519 * 118.99875 * 359.46865 * 11 10 9 27 27 N 1.31722 * 120.62714 * 0.24579 * 26 11 10 28 28 H 1.08999 * 109.46720 * 296.04427 * 1 2 3 29 29 H 1.09005 * 109.46871 * 56.04476 * 1 2 3 30 30 H 1.08999 * 109.47102 * 176.04558 * 1 2 3 31 31 H 1.08999 * 109.47401 * 183.95498 * 3 2 1 32 32 H 1.08998 * 109.47006 * 303.95917 * 3 2 1 33 33 H 1.09000 * 109.46606 * 63.95462 * 3 2 1 34 34 H 1.09004 * 109.47424 * 50.00241 * 4 2 1 35 35 H 1.09003 * 109.47333 * 289.99974 * 4 2 1 36 36 H 1.08994 * 109.46906 * 60.00298 * 5 4 2 37 37 H 1.08998 * 109.47539 * 299.99970 * 5 4 2 38 38 H 1.09007 * 109.46671 * 60.00287 * 6 5 4 39 39 H 1.08998 * 109.46994 * 300.00463 * 6 5 4 40 40 H 1.08007 * 120.36398 * 359.97438 * 9 8 7 41 41 H 1.08002 * 120.82045 * 180.31509 * 10 9 8 42 42 H 1.08005 * 119.93779 * 359.97438 * 13 12 11 43 43 H 1.08009 * 120.05808 * 180.25435 * 14 13 12 44 44 H 0.96992 * 119.99756 * 180.02562 * 19 18 16 45 45 H 1.08001 * 120.05401 * 179.97438 * 24 15 14 46 46 H 1.08002 * 119.94176 * 180.02562 * 25 24 15 47 47 H 1.08005 * 119.68424 * 180.27830 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9702 6 6 4.0529 -1.7528 2.1554 7 8 5.4623 -1.9292 1.9994 8 6 6.1074 -2.6207 2.9711 9 6 7.4802 -2.8240 2.8720 10 6 8.1324 -3.5237 3.8670 11 6 7.3764 -4.0152 4.9406 12 6 8.0258 -4.7763 6.0299 13 6 9.4037 -5.0192 5.9856 14 6 10.0078 -5.7147 6.9892 15 6 9.2410 -6.1998 8.0677 16 6 9.8602 -6.9254 9.1061 17 1 10.9116 -6.7858 9.3100 18 6 9.1123 -7.8268 9.8727 19 7 7.9615 -8.2640 9.4302 20 14 9.7575 -8.4052 11.5275 21 1 9.2803 -7.4874 12.5931 22 1 9.2626 -9.7787 11.7992 23 1 11.2423 -8.4092 11.5060 24 6 7.8530 -5.9574 8.1045 25 6 7.2597 -5.2559 7.0988 26 6 6.0031 -3.7707 4.9689 27 7 5.4221 -3.0928 4.0004 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0192 0.9322 37 1 3.7024 -1.4966 0.0450 38 1 3.5664 -2.7275 2.1938 39 1 3.8550 -1.2112 3.0803 40 1 8.0302 -2.4351 2.0276 41 1 9.1981 -3.6917 3.8179 42 1 9.9896 -4.6510 5.1564 43 1 11.0717 -5.8980 6.9561 44 1 7.4431 -8.8883 9.9615 45 1 7.2610 -6.3274 8.9285 46 1 6.1963 -5.0693 7.1261 47 1 5.4108 -4.1404 5.7929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205225708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:25 Heat of formation + Delta-G solvation = -4.046159 kcal Electronic energy + Delta-G solvation = -25427.444463 eV Core-core repulsion = 21767.153288 eV Total energy + Delta-G solvation = -3660.291175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52275 -39.77120 -38.92052 -38.27603 -35.78834 -33.77769 -33.61547 -32.54586 -31.30481 -30.14004 -28.50823 -27.66222 -26.77004 -25.01047 -24.15602 -23.42224 -22.17879 -21.91460 -21.72083 -19.57418 -19.11510 -17.88736 -17.47415 -17.32424 -16.92989 -16.36606 -16.29103 -16.05915 -15.61722 -15.19972 -15.04747 -15.01834 -14.81495 -14.51257 -14.28871 -14.04758 -13.96158 -13.55167 -13.35663 -13.31046 -13.04544 -12.88519 -12.75259 -12.70300 -12.61405 -12.40499 -12.29092 -12.20004 -12.08259 -11.56707 -11.51662 -11.33828 -11.15958 -10.81988 -10.47772 -9.93110 -9.47650 -9.36721 -8.79262 -8.60305 -6.31897 -0.03679 0.31611 1.11603 1.21293 1.38941 1.51986 1.57550 2.00883 2.17978 2.61502 3.02012 3.02131 3.39452 3.78023 3.85872 3.98291 4.04349 4.07542 4.10739 4.13053 4.28363 4.32528 4.39612 4.42431 4.47666 4.48438 4.61322 4.65030 4.71584 4.74368 4.81486 4.92239 4.98621 5.00765 5.06574 5.08701 5.11654 5.17454 5.19090 5.34963 5.48258 5.54164 5.68705 5.97148 6.00749 6.05136 6.07303 6.19698 6.31282 6.34682 6.63605 6.86163 6.91268 6.99654 8.23842 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.029746 B = 0.001750 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.076404 B =15992.293331 C =16763.044672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.561 5.561 3 C 0.018 3.982 4 C 0.062 3.938 5 C -0.104 4.104 6 C 0.075 3.925 7 O -0.314 6.314 8 C 0.274 3.726 9 C -0.172 4.172 10 C -0.063 4.063 11 C -0.082 4.082 12 C -0.190 4.190 13 C -0.068 4.068 14 C -0.243 4.243 15 C 0.085 3.915 16 C -0.485 4.485 17 H 0.081 0.919 18 C 0.035 3.965 19 N -0.813 5.813 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.256 1.256 24 C -0.192 4.192 25 C -0.085 4.085 26 C 0.105 3.895 27 N -0.542 5.542 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.292 0.708 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 13.024 -13.475 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.285 5.285 3 C -0.130 4.130 4 C -0.066 4.066 5 C -0.142 4.142 6 C 0.000 4.000 7 O -0.222 6.222 8 C 0.095 3.905 9 C -0.192 4.192 10 C -0.088 4.088 11 C -0.084 4.084 12 C -0.191 4.191 13 C -0.086 4.086 14 C -0.262 4.262 15 C 0.082 3.918 16 C -0.513 4.513 17 H 0.099 0.901 18 C -0.182 4.182 19 N -0.437 5.437 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.180 1.180 24 C -0.212 4.212 25 C -0.103 4.103 26 C -0.051 4.051 27 N -0.264 5.264 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.181 0.819 41 H 0.176 0.824 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.129 0.871 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.524 12.910 -14.088 21.815 hybrid contribution 0.525 -0.401 1.792 1.910 sum -9.999 12.509 -12.297 20.191 Atomic orbital electron populations 1.22435 0.86076 1.02878 1.01088 1.61943 1.08995 1.14695 1.42902 1.22507 1.01289 0.88202 1.01014 1.21937 0.93971 0.98999 0.91742 1.21437 0.95007 1.00604 0.97171 1.22548 0.77700 1.00483 0.99319 1.86124 1.24134 1.69313 1.42667 1.20021 0.90031 0.92667 0.87766 1.21177 0.91590 1.04048 1.02389 1.21702 1.01242 0.94392 0.91446 1.19777 0.94284 0.98820 0.95557 1.18137 0.93569 1.09838 0.97593 1.20694 0.93599 0.96697 0.97567 1.20886 0.99167 1.09284 0.96891 1.18102 0.92721 0.89453 0.91485 1.19942 0.97702 1.19939 1.13719 0.90059 1.26844 0.94354 0.94509 1.02468 1.69867 1.12863 1.23401 1.37610 0.85163 0.79858 0.78039 0.76488 1.18651 1.19197 1.17978 1.20955 0.95803 1.03990 1.00412 1.20737 0.98355 0.97140 0.94106 1.22564 0.92189 0.94740 0.95578 1.67157 1.40902 1.14785 1.03603 0.95395 0.90282 0.90946 0.91044 0.90337 0.95460 0.90086 0.94333 0.90679 0.90432 0.92250 0.92402 0.81905 0.82418 0.85614 0.87872 0.89746 0.87940 0.87132 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.49 16 2 N -0.56 -8.44 5.02 -948.85 -4.76 -13.20 16 3 C 0.02 0.23 9.32 127.69 1.19 1.42 16 4 C 0.06 0.96 4.96 86.31 0.43 1.39 16 5 C -0.10 -1.85 5.51 30.60 0.17 -1.68 16 6 C 0.08 1.73 5.30 71.98 0.38 2.11 16 7 O -0.31 -8.72 10.11 -89.07 -0.90 -9.62 16 8 C 0.27 8.50 7.49 84.83 0.64 9.14 16 9 C -0.17 -4.80 10.02 22.43 0.22 -4.58 16 10 C -0.06 -1.90 9.52 22.70 0.22 -1.69 16 11 C -0.08 -2.96 5.90 -19.93 -0.12 -3.08 16 12 C -0.19 -7.96 5.90 -19.87 -0.12 -8.07 16 13 C -0.07 -2.81 9.37 22.22 0.21 -2.61 16 14 C -0.24 -11.41 9.73 22.46 0.22 -11.19 16 15 C 0.08 4.45 5.57 -21.28 -0.12 4.33 16 16 C -0.48 -25.15 9.03 23.37 0.21 -24.94 16 17 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 18 C 0.04 1.70 5.13 85.27 0.44 2.13 16 19 N -0.81 -41.03 10.96 21.83 0.24 -40.79 16 20 Si 0.98 36.51 29.60 68.60 2.03 38.54 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 23 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 24 C -0.19 -9.84 8.63 22.46 0.19 -9.64 16 25 C -0.09 -3.85 9.37 22.22 0.21 -3.64 16 26 C 0.10 3.66 10.60 85.02 0.90 4.56 16 27 N -0.54 -18.18 9.18 -307.74 -2.83 -21.00 16 28 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.75 8.12 -2.38 -0.02 0.73 16 30 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.07 0.91 6.47 -2.39 -0.02 0.90 16 32 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 33 H 0.03 0.33 8.14 -2.39 -0.02 0.32 16 34 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 35 H 0.04 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.07 1.29 6.55 -2.39 -0.02 1.27 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 39 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.16 4.05 6.30 -2.91 -0.02 4.03 16 42 H 0.13 4.26 6.24 -2.91 -0.02 4.24 16 43 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 45 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 46 H 0.11 4.43 6.20 -2.91 -0.02 4.41 16 47 H 0.16 5.28 6.19 -2.91 -0.02 5.26 16 Total: -1.00 -58.98 384.71 1.24 -57.74 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.97 Total: 32.89 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 6.49 Total: -44.56 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -7.35 Total: -74.99 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.90 Total: -9.62 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -58.98 1.24 -57.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205225708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.691 kcal (2) G-P(sol) polarization free energy of solvation -58.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds