Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00326 * 2 1 4 4 C 1.46908 * 110.99770 * 123.95326 * 2 1 3 5 5 C 1.53002 * 109.46867 * 66.04261 * 4 2 1 6 6 C 1.53005 * 109.46887 * 179.97438 * 5 4 2 7 7 O 1.42898 * 109.47146 * 180.02562 * 6 5 4 8 8 C 1.35647 * 116.99993 * 180.02562 * 7 6 5 9 9 C 1.39013 * 119.55545 * 179.97438 * 8 7 6 10 10 C 1.38150 * 119.23546 * 180.02562 * 9 8 7 11 11 C 1.39904 * 118.38149 * 0.02562 * 10 9 8 12 12 C 1.48397 * 120.47598 * 179.97438 * 11 10 9 13 13 C 1.39736 * 119.99701 * 359.72669 * 12 11 10 14 14 C 1.38391 * 120.37772 * 180.27440 * 13 12 11 15 15 C 1.37722 * 120.37863 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.99164 * 359.97438 * 15 14 13 17 17 C 1.41421 * 120.18885 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00550 * 204.49073 * 17 16 15 19 19 C 1.39929 * 119.99594 * 24.48322 * 17 16 15 20 20 N 1.30833 * 120.00032 * 17.90638 * 19 17 16 21 21 Si 1.86796 * 119.99975 * 197.89807 * 19 17 16 22 22 H 1.48503 * 109.47182 * 90.00770 * 21 19 17 23 23 H 1.48504 * 109.47544 * 210.00464 * 21 19 17 24 24 H 1.48498 * 109.47538 * 330.00625 * 21 19 17 25 25 C 1.38736 * 120.00289 * 179.97438 * 12 11 10 26 26 C 1.39176 * 119.05530 * 0.25344 * 11 10 9 27 27 N 1.31817 * 120.66284 * 359.49595 * 26 11 10 28 28 H 1.09001 * 109.46596 * 296.04755 * 1 2 3 29 29 H 1.08997 * 109.46936 * 56.04286 * 1 2 3 30 30 H 1.08993 * 109.47407 * 176.04662 * 1 2 3 31 31 H 1.08997 * 109.46622 * 183.95510 * 3 2 1 32 32 H 1.09001 * 109.46905 * 303.95345 * 3 2 1 33 33 H 1.08998 * 109.47062 * 63.95007 * 3 2 1 34 34 H 1.08997 * 109.47010 * 306.04471 * 4 2 1 35 35 H 1.08997 * 109.46750 * 186.04031 * 4 2 1 36 36 H 1.08997 * 109.47134 * 60.00285 * 5 4 2 37 37 H 1.08993 * 109.47516 * 300.00152 * 5 4 2 38 38 H 1.09004 * 109.47019 * 60.00006 * 6 5 4 39 39 H 1.09002 * 109.47209 * 300.00312 * 6 5 4 40 40 H 1.07999 * 120.38374 * 359.97438 * 9 8 7 41 41 H 1.08001 * 120.80905 * 179.97438 * 10 9 8 42 42 H 1.07999 * 119.81649 * 0.27426 * 13 12 11 43 43 H 1.08004 * 119.81047 * 179.97438 * 14 13 12 44 44 H 1.07996 * 120.00072 * 179.97438 * 15 14 13 45 45 H 0.96999 * 120.00135 * 179.97438 * 20 19 17 46 46 H 1.07999 * 120.18399 * 359.74671 * 25 12 11 47 47 H 1.07997 * 119.66962 * 179.75209 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9704 6 6 2.1801 -3.0405 2.1550 7 8 1.8406 -4.4198 1.9985 8 6 2.2551 -5.2701 2.9706 9 6 1.9535 -6.6236 2.8721 10 6 2.3785 -7.4837 3.8662 11 6 3.1006 -6.9532 4.9406 12 6 3.5792 -7.8347 6.0343 13 6 3.3044 -9.2043 5.9985 14 6 3.7420 -10.0328 7.0170 15 6 4.4537 -9.5169 8.0772 16 6 4.7403 -8.1398 8.1286 17 6 5.4713 -7.6056 9.2151 18 1 5.3641 -6.5636 9.4779 19 6 6.3335 -8.4274 9.9496 20 7 6.7377 -9.5659 9.4476 21 14 6.9074 -7.8986 11.6467 22 1 5.9569 -8.4029 12.6701 23 1 8.2585 -8.4565 11.9085 24 1 6.9632 -6.4161 11.7108 25 6 4.2950 -7.2983 7.0948 26 6 3.3588 -5.5859 4.9722 27 7 2.9394 -4.8000 4.0006 28 1 -0.3632 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0251 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 2.0656 -2.6214 0.0453 37 1 0.5471 -2.3475 0.9323 38 1 1.7461 -2.6618 3.0804 39 1 3.2644 -2.9357 2.1926 40 1 1.3926 -6.9982 2.0287 41 1 2.1579 -8.5397 3.8156 42 1 2.7473 -9.6188 5.1712 43 1 3.5241 -11.0900 6.9802 44 1 4.7919 -10.1689 8.8689 45 1 7.3357 -10.1354 9.9565 46 1 4.5091 -6.2402 7.1254 47 1 3.9119 -5.1653 5.7989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205226093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = 11.792483 kcal Electronic energy + Delta-G solvation = -25531.346673 eV Core-core repulsion = 21871.742313 eV Total energy + Delta-G solvation = -3659.604360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36922 -38.51543 -37.84789 -37.04132 -33.94668 -32.87784 -32.31592 -31.12125 -29.93580 -27.99385 -27.84275 -26.55885 -25.48624 -23.74700 -23.18518 -22.33464 -21.13030 -20.40840 -20.28480 -18.28755 -17.40499 -16.60622 -16.54807 -15.68527 -15.55849 -15.51735 -15.10879 -14.93396 -14.85540 -14.14367 -13.89197 -13.65002 -13.43284 -13.06316 -13.03378 -12.84761 -12.78540 -12.48321 -12.29729 -12.13663 -11.80921 -11.76540 -11.67582 -11.47609 -11.37618 -11.17810 -11.09925 -10.79695 -10.58695 -10.48447 -9.86069 -9.65983 -9.63947 -9.24668 -9.14372 -8.77696 -8.55486 -7.57567 -6.98886 -6.81383 -4.43238 1.28301 1.51113 2.73740 2.98410 2.99580 3.04837 3.07837 3.18238 3.66926 3.89088 4.16282 4.53277 4.61092 4.62557 4.73104 4.80288 4.95955 4.99958 5.11357 5.18106 5.22857 5.25472 5.29053 5.32391 5.35770 5.46208 5.48736 5.53706 5.61209 5.64347 5.83339 5.87704 5.94521 6.22311 6.26790 6.30927 6.50784 6.59822 6.60755 6.70632 6.83935 6.98122 7.13930 7.25786 7.42668 7.49207 7.74792 7.93283 7.96892 8.09860 8.20901 8.54275 8.81565 8.86618 10.13034 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.001956 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.370861 B =14310.267465 C =15657.826644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.058 3.942 5 C -0.117 4.117 6 C 0.075 3.925 7 O -0.310 6.310 8 C 0.296 3.704 9 C -0.187 4.187 10 C -0.047 4.047 11 C -0.093 4.093 12 C -0.033 4.033 13 C -0.223 4.223 14 C -0.106 4.106 15 C -0.154 4.154 16 C 0.108 3.892 17 C -0.463 4.463 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.205 4.205 26 C 0.135 3.865 27 N -0.537 5.537 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.281 0.719 46 H 0.097 0.903 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 12.604 -13.367 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.070 4.070 5 C -0.155 4.155 6 C -0.002 4.002 7 O -0.219 6.219 8 C 0.118 3.882 9 C -0.207 4.207 10 C -0.072 4.072 11 C -0.095 4.095 12 C -0.034 4.034 13 C -0.242 4.242 14 C -0.125 4.125 15 C -0.174 4.174 16 C 0.105 3.895 17 C -0.493 4.493 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.225 4.225 26 C -0.021 4.021 27 N -0.260 5.260 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.271 13.053 -13.975 20.835 hybrid contribution 0.042 -0.222 1.604 1.620 sum -8.229 12.831 -12.371 19.632 Atomic orbital electron populations 1.22472 0.87284 1.02675 1.00494 1.61939 1.08203 1.13905 1.43109 1.22389 1.00929 0.88553 1.00555 1.21995 1.00643 0.92856 0.91494 1.21535 1.02072 0.93329 0.98545 1.22444 1.00562 0.78702 0.98445 1.86141 1.73672 1.18938 1.43102 1.19732 0.92732 0.88263 0.87488 1.20916 1.06770 0.90714 1.02316 1.21532 0.93949 1.00115 0.91604 1.19975 0.99091 0.94462 0.95994 1.18101 0.99729 0.92345 0.93207 1.20383 1.09960 0.92670 1.01198 1.20628 0.99150 0.97338 0.95336 1.21441 1.00743 0.96386 0.98815 1.17536 0.89389 0.91674 0.90858 1.19571 1.21086 0.97315 1.11305 0.90307 1.25902 0.94719 0.94287 0.99267 1.69818 1.25026 1.10532 1.36496 0.86307 0.78257 0.80164 0.81983 1.19263 1.20322 1.18586 1.21039 1.07314 0.98517 0.95607 1.22623 0.95131 0.89621 0.94706 1.67246 1.14860 1.40572 1.03304 0.95542 0.91377 0.90861 0.91184 0.91271 0.95569 0.94340 0.90247 0.90083 0.90990 0.91903 0.91655 0.84639 0.84034 0.89103 0.89097 0.86288 0.90802 0.88473 0.81970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.55 -4.49 5.02 -251.26 -1.26 -5.75 16 3 C 0.02 0.16 9.57 60.07 0.57 0.73 16 4 C 0.06 0.48 4.96 -3.82 -0.02 0.46 16 5 C -0.12 -1.09 5.51 -26.73 -0.15 -1.24 16 6 C 0.07 0.88 5.30 37.16 0.20 1.07 16 7 O -0.31 -4.45 10.11 -18.64 -0.19 -4.64 16 8 C 0.30 4.74 7.49 -17.07 -0.13 4.61 16 9 C -0.19 -2.78 10.03 -39.33 -0.39 -3.17 16 10 C -0.05 -0.75 9.52 -38.99 -0.37 -1.12 16 11 C -0.09 -1.73 5.89 -104.74 -0.62 -2.34 16 12 C -0.03 -0.71 5.87 -104.97 -0.62 -1.33 16 13 C -0.22 -4.73 9.45 -38.97 -0.37 -5.10 16 14 C -0.11 -2.38 10.01 -39.71 -0.40 -2.78 16 15 C -0.15 -3.88 8.69 -38.82 -0.34 -4.21 16 16 C 0.11 2.77 5.57 -106.87 -0.60 2.17 16 17 C -0.46 -11.89 9.05 -37.74 -0.34 -12.23 16 18 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 19 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.79 -20.00 10.96 55.55 0.61 -19.39 16 21 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 25 C -0.21 -4.80 9.18 -38.53 -0.35 -5.15 16 26 C 0.13 2.39 10.59 -17.21 -0.18 2.21 16 27 N -0.54 -9.14 9.19 -13.05 -0.12 -9.26 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.51 6.47 -51.93 -0.34 0.18 16 31 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.66 6.55 -51.93 -0.34 0.32 16 38 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.14 2.01 6.30 -52.49 -0.33 1.68 16 42 H 0.09 1.66 6.24 -52.49 -0.33 1.34 16 43 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 45 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 46 H 0.10 2.10 6.21 -52.49 -0.33 1.78 16 47 H 0.16 2.75 6.21 -52.49 -0.33 2.42 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -27.67 384.96 -10.74 -38.41 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.92 Total: 6.57 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.63 Total: -24.95 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.77 Total: -34.40 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.67 -10.74 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205226093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.201 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds