Wall clock time and date at job start Tue Mar 31 2020 14:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00326 * 2 1 4 4 C 1.46908 * 110.99770 * 123.95326 * 2 1 3 5 5 C 1.53002 * 109.46867 * 66.04261 * 4 2 1 6 6 C 1.53005 * 109.46887 * 179.97438 * 5 4 2 7 7 O 1.42898 * 109.47146 * 180.02562 * 6 5 4 8 8 C 1.35647 * 116.99993 * 180.02562 * 7 6 5 9 9 C 1.39013 * 119.55545 * 179.97438 * 8 7 6 10 10 C 1.38150 * 119.23546 * 180.02562 * 9 8 7 11 11 C 1.39904 * 118.38149 * 0.02562 * 10 9 8 12 12 C 1.48397 * 120.47598 * 179.97438 * 11 10 9 13 13 C 1.39736 * 119.99701 * 359.72669 * 12 11 10 14 14 C 1.38391 * 120.37772 * 180.27440 * 13 12 11 15 15 C 1.37722 * 120.37863 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.99164 * 359.97438 * 15 14 13 17 17 C 1.41421 * 120.18885 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00550 * 204.49073 * 17 16 15 19 19 C 1.39929 * 119.99594 * 24.48322 * 17 16 15 20 20 N 1.30833 * 120.00032 * 17.90638 * 19 17 16 21 21 Si 1.86796 * 119.99975 * 197.89807 * 19 17 16 22 22 H 1.48503 * 109.47182 * 90.00770 * 21 19 17 23 23 H 1.48504 * 109.47544 * 210.00464 * 21 19 17 24 24 H 1.48498 * 109.47538 * 330.00625 * 21 19 17 25 25 C 1.38736 * 120.00289 * 179.97438 * 12 11 10 26 26 C 1.39176 * 119.05530 * 0.25344 * 11 10 9 27 27 N 1.31817 * 120.66284 * 359.49595 * 26 11 10 28 28 H 1.09001 * 109.46596 * 296.04755 * 1 2 3 29 29 H 1.08997 * 109.46936 * 56.04286 * 1 2 3 30 30 H 1.08993 * 109.47407 * 176.04662 * 1 2 3 31 31 H 1.08997 * 109.46622 * 183.95510 * 3 2 1 32 32 H 1.09001 * 109.46905 * 303.95345 * 3 2 1 33 33 H 1.08998 * 109.47062 * 63.95007 * 3 2 1 34 34 H 1.08997 * 109.47010 * 306.04471 * 4 2 1 35 35 H 1.08997 * 109.46750 * 186.04031 * 4 2 1 36 36 H 1.08997 * 109.47134 * 60.00285 * 5 4 2 37 37 H 1.08993 * 109.47516 * 300.00152 * 5 4 2 38 38 H 1.09004 * 109.47019 * 60.00006 * 6 5 4 39 39 H 1.09002 * 109.47209 * 300.00312 * 6 5 4 40 40 H 1.07999 * 120.38374 * 359.97438 * 9 8 7 41 41 H 1.08001 * 120.80905 * 179.97438 * 10 9 8 42 42 H 1.07999 * 119.81649 * 0.27426 * 13 12 11 43 43 H 1.08004 * 119.81047 * 179.97438 * 14 13 12 44 44 H 1.07996 * 120.00072 * 179.97438 * 15 14 13 45 45 H 0.96999 * 120.00135 * 179.97438 * 20 19 17 46 46 H 1.07999 * 120.18399 * 359.74671 * 25 12 11 47 47 H 1.07997 * 119.66962 * 179.75209 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9704 6 6 2.1801 -3.0405 2.1550 7 8 1.8406 -4.4198 1.9985 8 6 2.2551 -5.2701 2.9706 9 6 1.9535 -6.6236 2.8721 10 6 2.3785 -7.4837 3.8662 11 6 3.1006 -6.9532 4.9406 12 6 3.5792 -7.8347 6.0343 13 6 3.3044 -9.2043 5.9985 14 6 3.7420 -10.0328 7.0170 15 6 4.4537 -9.5169 8.0772 16 6 4.7403 -8.1398 8.1286 17 6 5.4713 -7.6056 9.2151 18 1 5.3641 -6.5636 9.4779 19 6 6.3335 -8.4274 9.9496 20 7 6.7377 -9.5659 9.4476 21 14 6.9074 -7.8986 11.6467 22 1 5.9569 -8.4029 12.6701 23 1 8.2585 -8.4565 11.9085 24 1 6.9632 -6.4161 11.7108 25 6 4.2950 -7.2983 7.0948 26 6 3.3588 -5.5859 4.9722 27 7 2.9394 -4.8000 4.0006 28 1 -0.3632 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0251 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7045 1.8723 0.9232 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 2.0656 -2.6214 0.0453 37 1 0.5471 -2.3475 0.9323 38 1 1.7461 -2.6618 3.0804 39 1 3.2644 -2.9357 2.1926 40 1 1.3926 -6.9982 2.0287 41 1 2.1579 -8.5397 3.8156 42 1 2.7473 -9.6188 5.1712 43 1 3.5241 -11.0900 6.9802 44 1 4.7919 -10.1689 8.8689 45 1 7.3357 -10.1354 9.9565 46 1 4.5091 -6.2402 7.1254 47 1 3.9119 -5.1653 5.7989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205226093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:29 Heat of formation + Delta-G solvation = -3.278399 kcal Electronic energy + Delta-G solvation = -25532.000195 eV Core-core repulsion = 21871.742313 eV Total energy + Delta-G solvation = -3660.257882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63883 -39.76739 -38.89616 -38.29117 -35.69255 -33.83535 -33.67506 -32.49212 -31.72342 -29.30263 -28.50668 -27.49088 -27.25367 -24.95047 -24.52134 -23.35272 -22.15503 -21.93853 -21.74519 -19.47343 -19.14067 -17.86422 -17.51284 -17.24875 -16.64081 -16.42624 -16.35079 -16.30814 -15.66933 -15.28069 -15.06501 -15.04342 -14.87416 -14.57295 -14.28081 -14.09309 -14.04036 -13.45260 -13.34431 -13.18105 -13.05628 -12.90930 -12.70991 -12.69290 -12.59092 -12.40411 -12.31214 -12.17011 -12.09447 -11.58158 -11.52522 -11.35350 -11.11234 -10.89676 -10.54930 -10.00189 -9.40105 -9.36851 -8.66339 -8.57102 -6.34395 -0.12526 0.24284 0.99808 1.30804 1.39030 1.51397 1.55677 1.93601 2.21245 2.65475 2.94723 3.00595 3.31350 3.77955 3.84282 3.86833 3.99876 4.02606 4.06829 4.07672 4.27089 4.28025 4.38808 4.46908 4.48061 4.49325 4.63109 4.69907 4.70894 4.73340 4.76924 4.85638 4.98298 5.00811 5.06554 5.08316 5.13428 5.15125 5.17206 5.29924 5.48104 5.51242 5.69538 5.99499 6.00316 6.04887 6.08285 6.16887 6.23302 6.37427 6.68836 6.82616 6.94800 7.02112 8.34104 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.001956 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.370861 B =14310.267465 C =15657.826644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.561 5.561 3 C 0.023 3.977 4 C 0.061 3.939 5 C -0.104 4.104 6 C 0.074 3.926 7 O -0.310 6.310 8 C 0.294 3.706 9 C -0.179 4.179 10 C -0.037 4.037 11 C -0.120 4.120 12 C -0.028 4.028 13 C -0.221 4.221 14 C -0.108 4.108 15 C -0.185 4.185 16 C 0.078 3.922 17 C -0.501 4.501 18 H 0.075 0.925 19 C 0.036 3.964 20 N -0.826 5.826 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.224 4.224 26 C 0.130 3.870 27 N -0.548 5.548 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.101 0.899 45 H 0.288 0.712 46 H 0.102 0.898 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 13.099 -15.146 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.285 5.285 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.142 4.142 6 C -0.002 4.002 7 O -0.218 6.218 8 C 0.116 3.884 9 C -0.199 4.199 10 C -0.061 4.061 11 C -0.122 4.122 12 C -0.028 4.028 13 C -0.240 4.240 14 C -0.126 4.126 15 C -0.205 4.205 16 C 0.075 3.925 17 C -0.530 4.530 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.452 5.452 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.244 4.244 26 C -0.025 4.025 27 N -0.271 5.271 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.187 0.813 41 H 0.182 0.818 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.120 0.880 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.525 13.559 -15.776 22.879 hybrid contribution 0.303 -0.283 1.904 1.949 sum -9.222 13.276 -13.872 21.301 Atomic orbital electron populations 1.22507 0.86677 1.02825 1.01001 1.61952 1.08909 1.14761 1.42873 1.22434 1.01130 0.87844 1.01082 1.21941 1.00802 0.92210 0.91752 1.21437 1.02099 0.93522 0.97155 1.22597 1.00466 0.77683 0.99482 1.86160 1.73316 1.19917 1.42416 1.20115 0.91846 0.89261 0.87216 1.21250 1.06014 0.89929 1.02743 1.21770 0.92446 1.01389 0.90530 1.19862 1.01432 0.94350 0.96554 1.18376 0.98167 0.93152 0.93151 1.20801 1.09183 0.92406 1.01573 1.20937 0.98105 0.98885 0.94708 1.21399 1.02971 0.96197 0.99915 1.17893 0.90210 0.92547 0.91806 1.19804 1.22682 0.97630 1.12914 0.90700 1.26713 0.94355 0.94151 1.02676 1.69874 1.25734 1.11599 1.37995 0.85233 0.78023 0.79715 0.76921 1.18737 1.19327 1.18311 1.21212 1.08259 0.98769 0.96133 1.22592 0.95225 0.89696 0.94963 1.67253 1.15565 1.40644 1.03659 0.95482 0.90361 0.90984 0.90961 0.90284 0.95415 0.94341 0.90100 0.90338 0.90575 0.92228 0.92094 0.81294 0.81756 0.85424 0.86623 0.88083 0.90177 0.88023 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 127.69 1.19 1.41 16 2 N -0.56 -8.26 5.02 -948.84 -4.76 -13.02 16 3 C 0.02 0.26 9.57 127.69 1.22 1.49 16 4 C 0.06 0.93 4.96 86.30 0.43 1.36 16 5 C -0.10 -1.77 5.51 30.60 0.17 -1.60 16 6 C 0.07 1.62 5.30 71.98 0.38 2.00 16 7 O -0.31 -8.20 10.11 -89.62 -0.91 -9.10 16 8 C 0.29 8.76 7.49 84.81 0.64 9.40 16 9 C -0.18 -4.71 10.03 22.44 0.22 -4.48 16 10 C -0.04 -1.06 9.52 22.65 0.22 -0.84 16 11 C -0.12 -4.28 5.89 -19.94 -0.12 -4.40 16 12 C -0.03 -1.18 5.87 -20.09 -0.12 -1.30 16 13 C -0.22 -9.01 9.45 22.67 0.21 -8.80 16 14 C -0.11 -4.83 10.01 22.18 0.22 -4.60 16 15 C -0.19 -9.62 8.69 22.76 0.20 -9.43 16 16 C 0.08 4.16 5.57 -21.32 -0.12 4.04 16 17 C -0.50 -26.94 9.05 23.46 0.21 -26.72 16 18 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 19 C 0.04 1.80 5.14 85.25 0.44 2.24 16 20 N -0.83 -43.13 10.96 21.82 0.24 -42.89 16 21 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 C -0.22 -10.82 9.18 22.95 0.21 -10.61 16 26 C 0.13 4.58 10.59 84.92 0.90 5.48 16 27 N -0.55 -18.07 9.19 -308.07 -2.83 -20.90 16 28 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.07 0.89 6.47 -2.39 -0.02 0.87 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.08 0.74 8.12 -2.39 -0.02 0.73 16 33 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 35 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.24 6.55 -2.39 -0.02 1.23 16 38 H 0.06 1.36 8.10 -2.38 -0.02 1.34 16 39 H 0.06 1.40 8.10 -2.39 -0.02 1.39 16 40 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.17 3.94 6.30 -2.91 -0.02 3.92 16 42 H 0.13 4.20 6.24 -2.91 -0.02 4.18 16 43 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.10 5.50 6.15 -2.91 -0.02 5.49 16 45 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 46 H 0.10 4.62 6.21 -2.91 -0.02 4.61 16 47 H 0.16 5.53 6.21 -2.91 -0.02 5.51 16 Total: -1.00 -61.04 384.96 1.24 -59.80 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.97 Total: 31.20 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 6.51 Total: -45.37 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -7.35 Total: -76.82 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.91 Total: -9.10 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -61.04 1.24 -59.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205226093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.520 kcal (2) G-P(sol) polarization free energy of solvation -61.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds