Wall clock time and date at job start Tue Mar 31 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99701 * 2 1 4 4 C 1.38752 * 120.05846 * 359.72405 * 3 2 1 5 5 C 1.38113 * 119.94448 * 179.70069 * 4 3 2 6 6 C 1.38286 * 120.05656 * 0.59715 * 5 4 3 7 7 C 1.38251 * 120.11090 * 359.67949 * 6 5 4 8 8 C 1.50702 * 119.97292 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47347 * 270.02137 * 8 7 6 10 10 N 1.46896 * 109.46921 * 179.97438 * 9 8 7 11 11 C 1.46894 * 111.00010 * 66.04966 * 10 9 8 12 12 C 1.50698 * 109.47488 * 62.67766 * 11 10 9 13 13 H 1.08003 * 119.99758 * 5.12338 * 12 11 10 14 14 C 1.37874 * 120.00210 * 185.12085 * 12 11 10 15 15 N 1.31510 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47195 * 59.99836 * 16 14 12 18 18 H 1.48500 * 109.47090 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47234 * 300.00049 * 16 14 12 20 20 C 1.46900 * 110.99933 * 190.00013 * 10 9 8 21 21 C 1.50693 * 109.47265 * 163.92381 * 20 10 9 22 22 C 1.38681 * 120.42122 * 275.52184 * 21 20 10 23 23 C 1.38623 * 118.42268 * 179.78525 * 22 21 20 24 24 C 1.38230 * 119.15972 * 0.50888 * 23 22 21 25 25 N 1.31852 * 120.76488 * 359.73237 * 24 23 22 26 26 C 1.31885 * 121.72535 * 359.97438 * 25 24 23 27 27 C 1.38158 * 120.05182 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.47001 * 299.99827 * 1 2 3 29 29 H 1.08993 * 109.47025 * 60.00204 * 1 2 3 30 30 H 1.09002 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02586 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.97514 * 180.29946 * 5 4 3 33 33 H 1.08002 * 119.94729 * 179.69920 * 6 5 4 34 34 H 1.09004 * 109.46866 * 30.02619 * 8 7 6 35 35 H 1.08998 * 109.46928 * 150.01735 * 8 7 6 36 36 H 1.08994 * 109.46908 * 300.00504 * 9 8 7 37 37 H 1.09009 * 109.46947 * 60.00005 * 9 8 7 38 38 H 1.09004 * 109.47412 * 182.68026 * 11 10 9 39 39 H 1.09005 * 109.47249 * 302.67849 * 11 10 9 40 40 H 0.97011 * 119.99818 * 180.02562 * 15 14 12 41 41 H 1.08997 * 109.47409 * 283.92379 * 20 10 9 42 42 H 1.08999 * 109.47009 * 43.92579 * 20 10 9 43 43 H 1.08002 * 120.78271 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.41759 * 180.22549 * 23 22 21 45 45 H 1.07999 * 119.61618 * 179.75158 * 24 23 22 46 46 H 1.07999 * 119.61857 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.02581 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6047 0.0005 6 6 3.3018 3.6758 0.0000 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 -0.0011 9 6 6.0691 2.6256 -1.4439 10 7 7.5359 2.7053 -1.4448 11 6 8.1299 1.4825 -0.8882 12 6 7.7638 0.3061 -1.7561 13 1 7.2218 0.4625 -2.6770 14 6 8.1210 -0.9697 -1.3744 15 7 8.7815 -1.1600 -0.2533 16 14 7.6678 -2.4278 -2.4506 17 1 8.2892 -2.2667 -3.7897 18 1 8.1632 -3.6791 -1.8229 19 1 6.1915 -2.4966 -2.5950 20 6 8.0478 2.9714 -2.7958 21 6 9.4794 3.4337 -2.7085 22 6 9.7732 4.7680 -2.4710 23 6 11.1044 5.1470 -2.3942 24 6 12.0878 4.1910 -2.5664 25 7 11.7715 2.9317 -2.7958 26 6 10.5161 2.5344 -2.8695 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 0.2128 2.3203 -0.0107 32 1 1.3339 4.5114 0.0009 33 1 3.7921 4.6381 0.0000 34 1 5.8760 3.5065 0.5126 35 1 5.9718 1.7292 0.5126 36 1 5.7538 1.7174 -1.9574 37 1 5.6580 3.4948 -1.9575 38 1 9.2144 1.5872 -0.8566 39 1 7.7509 1.3213 0.1210 40 1 9.0331 -2.0577 0.0150 41 1 7.9962 2.0592 -3.3901 42 1 7.4437 3.7467 -3.2670 43 1 8.9835 5.4939 -2.3448 44 1 11.3698 6.1770 -2.2068 45 1 13.1273 4.4789 -2.5121 46 1 10.2957 1.4943 -3.0594 47 1 4.0207 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207428899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:08 Heat of formation + Delta-G solvation = 23.026518 kcal Electronic energy + Delta-G solvation = -27057.249009 eV Core-core repulsion = 23398.131794 eV Total energy + Delta-G solvation = -3659.117215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.02786 -39.70447 -37.81832 -36.74879 -33.07086 -32.68410 -31.74407 -30.93733 -30.32325 -28.02334 -27.26062 -27.02582 -24.77077 -23.44961 -22.98212 -22.39414 -21.76183 -20.54503 -19.54108 -17.62091 -16.68809 -16.35476 -16.15574 -15.84233 -15.81136 -15.70635 -15.03847 -14.91013 -14.59372 -14.14046 -13.84506 -13.55442 -13.26117 -13.20569 -12.73134 -12.70510 -12.59700 -12.47820 -12.29317 -11.86395 -11.74839 -11.41368 -11.24504 -11.05709 -10.91054 -10.83785 -10.73266 -10.60819 -10.27545 -10.17747 -10.00132 -9.61236 -9.31793 -8.94718 -8.61119 -8.46355 -8.41190 -8.05737 -7.23952 -6.03426 -4.12783 1.48466 1.59532 1.61302 1.76180 3.29246 3.32434 3.34993 3.37073 3.91866 4.26010 4.40379 4.83459 4.86854 4.94164 5.04924 5.05736 5.11738 5.19891 5.27306 5.32756 5.37424 5.43663 5.44714 5.51498 5.57625 5.63272 5.72364 5.86900 5.90010 6.02631 6.06504 6.15097 6.30662 6.32816 6.45943 6.48418 6.52150 6.55662 6.61965 6.76533 6.85090 6.92395 7.04465 7.17450 7.25901 7.51417 7.52800 7.89102 7.99379 8.20283 8.26041 8.47116 8.96604 9.54247 11.01473 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003651 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.699817 B = 7667.673652 C = 9789.660957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.221 4.221 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.026 4.026 8 C -0.077 4.077 9 C 0.073 3.927 10 N -0.538 5.538 11 C 0.183 3.817 12 C -0.551 4.551 13 H 0.056 0.944 14 C 0.071 3.929 15 N -0.886 5.886 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.097 3.903 21 C -0.106 4.106 22 C -0.065 4.065 23 C -0.185 4.185 24 C 0.082 3.918 25 N -0.490 5.490 26 C 0.120 3.880 27 C -0.142 4.142 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.146 0.854 46 H 0.161 0.839 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 10.912 -1.141 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.240 4.240 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.027 4.027 8 C -0.115 4.115 9 C -0.056 4.056 10 N -0.262 5.262 11 C 0.058 3.942 12 C -0.590 4.590 13 H 0.074 0.926 14 C -0.133 4.133 15 N -0.524 5.524 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.032 4.032 21 C -0.108 4.108 22 C -0.091 4.091 23 C -0.205 4.205 24 C -0.075 4.075 25 N -0.198 5.198 26 C -0.037 4.037 27 C -0.161 4.161 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.163 0.837 46 H 0.178 0.822 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.676 10.348 -0.825 14.191 hybrid contribution -1.467 -0.877 -0.834 1.901 sum -11.142 9.471 -1.659 14.718 Atomic orbital electron populations 1.22999 0.78952 1.03619 1.01028 1.86112 1.20911 1.27212 1.88843 1.19049 0.92379 0.83930 0.96719 1.21107 0.99501 0.92549 1.10796 1.20837 0.94626 0.96619 0.98233 1.20987 0.93494 0.98180 1.04746 1.19848 0.96424 0.91744 0.94678 1.20632 0.88562 1.03797 0.98498 1.21808 0.88802 0.99958 0.94999 1.62553 1.04952 1.39744 1.18906 1.19830 0.95250 0.83618 0.95539 1.21604 1.37365 0.92340 1.07690 0.92579 1.24893 0.94788 0.98718 0.94865 1.69925 1.38360 1.22176 1.21913 0.86812 0.78942 0.82360 0.80910 1.20213 1.21226 1.20208 1.20844 0.90093 0.99867 0.92376 1.20872 0.97398 0.93767 0.98786 1.21401 0.96210 0.95904 0.95603 1.22004 0.94004 1.00682 1.03766 1.22627 0.99433 0.88876 0.96609 1.67712 1.21759 1.17832 1.12492 1.22933 0.86929 1.00377 0.93484 1.20515 0.91095 0.99067 1.05404 0.92913 0.92891 0.88514 0.86090 0.86268 0.86015 0.90895 0.89537 0.93393 0.93078 0.95264 0.94446 0.92709 0.92116 0.92005 0.85434 0.85666 0.83703 0.82193 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.62 10.50 -19.44 -0.20 -4.83 16 3 C 0.12 1.87 6.69 -39.22 -0.26 1.61 16 4 C -0.22 -2.80 9.04 -39.44 -0.36 -3.15 16 5 C -0.09 -1.03 10.04 -39.61 -0.40 -1.43 16 6 C -0.16 -2.09 9.70 -39.56 -0.38 -2.47 16 7 C -0.03 -0.41 5.13 -104.65 -0.54 -0.95 16 8 C -0.08 -1.32 5.27 -27.88 -0.15 -1.46 16 9 C 0.07 1.31 4.75 -3.83 -0.02 1.29 16 10 N -0.54 -10.60 4.66 -237.53 -1.11 -11.71 16 11 C 0.18 4.40 4.72 -4.98 -0.02 4.37 16 12 C -0.55 -14.12 7.33 -34.44 -0.25 -14.38 16 13 H 0.06 1.43 5.96 -52.48 -0.31 1.11 16 14 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 15 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 16 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.10 1.74 4.97 -4.98 -0.02 1.72 16 21 C -0.11 -1.87 4.92 -104.48 -0.51 -2.38 16 22 C -0.06 -0.98 9.88 -39.28 -0.39 -1.37 16 23 C -0.18 -2.55 10.11 -39.44 -0.40 -2.95 16 24 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 25 N -0.49 -9.14 10.36 -13.25 -0.14 -9.28 16 26 C 0.12 2.32 9.68 -17.55 -0.17 2.15 16 27 C -0.14 -2.38 9.64 -39.44 -0.38 -2.76 16 28 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 29 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.09 1.70 6.44 -51.93 -0.33 1.37 16 36 H 0.05 0.98 6.58 -51.93 -0.34 0.64 16 37 H 0.05 0.82 7.86 -51.92 -0.41 0.41 16 38 H 0.03 0.78 6.60 -51.93 -0.34 0.43 16 39 H 0.04 0.98 6.35 -51.93 -0.33 0.65 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.06 1.20 6.08 -51.93 -0.32 0.89 16 42 H 0.06 0.97 7.79 -51.93 -0.40 0.56 16 43 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.16 3.33 8.06 -52.49 -0.42 2.91 16 47 H 0.14 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -30.01 384.20 -10.35 -40.36 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.85 Total: 6.26 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.56 Total: -18.02 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.51 Total: -45.57 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.01 -10.35 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207428899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.388 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds