Wall clock time and date at job start Tue Mar 31 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35904 * 116.99701 * 2 1 4 4 C 1.38752 * 120.05846 * 359.72405 * 3 2 1 5 5 C 1.38113 * 119.94448 * 179.70069 * 4 3 2 6 6 C 1.38286 * 120.05656 * 0.59715 * 5 4 3 7 7 C 1.38251 * 120.11090 * 359.67949 * 6 5 4 8 8 C 1.50702 * 119.97292 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47347 * 270.02137 * 8 7 6 10 10 N 1.46896 * 109.46921 * 179.97438 * 9 8 7 11 11 C 1.46894 * 111.00010 * 66.04966 * 10 9 8 12 12 C 1.50698 * 109.47488 * 62.67766 * 11 10 9 13 13 H 1.08003 * 119.99758 * 5.12338 * 12 11 10 14 14 C 1.37874 * 120.00210 * 185.12085 * 12 11 10 15 15 N 1.31510 * 119.99977 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47195 * 59.99836 * 16 14 12 18 18 H 1.48500 * 109.47090 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47234 * 300.00049 * 16 14 12 20 20 C 1.46900 * 110.99933 * 190.00013 * 10 9 8 21 21 C 1.50693 * 109.47265 * 163.92381 * 20 10 9 22 22 C 1.38681 * 120.42122 * 275.52184 * 21 20 10 23 23 C 1.38623 * 118.42268 * 179.78525 * 22 21 20 24 24 C 1.38230 * 119.15972 * 0.50888 * 23 22 21 25 25 N 1.31852 * 120.76488 * 359.73237 * 24 23 22 26 26 C 1.31885 * 121.72535 * 359.97438 * 25 24 23 27 27 C 1.38158 * 120.05182 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.47001 * 299.99827 * 1 2 3 29 29 H 1.08993 * 109.47025 * 60.00204 * 1 2 3 30 30 H 1.09002 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02586 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.97514 * 180.29946 * 5 4 3 33 33 H 1.08002 * 119.94729 * 179.69920 * 6 5 4 34 34 H 1.09004 * 109.46866 * 30.02619 * 8 7 6 35 35 H 1.08998 * 109.46928 * 150.01735 * 8 7 6 36 36 H 1.08994 * 109.46908 * 300.00504 * 9 8 7 37 37 H 1.09009 * 109.46947 * 60.00005 * 9 8 7 38 38 H 1.09004 * 109.47412 * 182.68026 * 11 10 9 39 39 H 1.09005 * 109.47249 * 302.67849 * 11 10 9 40 40 H 0.97011 * 119.99818 * 180.02562 * 15 14 12 41 41 H 1.08997 * 109.47409 * 283.92379 * 20 10 9 42 42 H 1.08999 * 109.47009 * 43.92579 * 20 10 9 43 43 H 1.08002 * 120.78271 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.41759 * 180.22549 * 23 22 21 45 45 H 1.07999 * 119.61618 * 179.75158 * 24 23 22 46 46 H 1.07999 * 119.61857 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.02581 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6047 0.0005 6 6 3.3018 3.6758 0.0000 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 -0.0011 9 6 6.0691 2.6256 -1.4439 10 7 7.5359 2.7053 -1.4448 11 6 8.1299 1.4825 -0.8882 12 6 7.7638 0.3061 -1.7561 13 1 7.2218 0.4625 -2.6770 14 6 8.1210 -0.9697 -1.3744 15 7 8.7815 -1.1600 -0.2533 16 14 7.6678 -2.4278 -2.4506 17 1 8.2892 -2.2667 -3.7897 18 1 8.1632 -3.6791 -1.8229 19 1 6.1915 -2.4966 -2.5950 20 6 8.0478 2.9714 -2.7958 21 6 9.4794 3.4337 -2.7085 22 6 9.7732 4.7680 -2.4710 23 6 11.1044 5.1470 -2.3942 24 6 12.0878 4.1910 -2.5664 25 7 11.7715 2.9317 -2.7958 26 6 10.5161 2.5344 -2.8695 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 0.2128 2.3203 -0.0107 32 1 1.3339 4.5114 0.0009 33 1 3.7921 4.6381 0.0000 34 1 5.8760 3.5065 0.5126 35 1 5.9718 1.7292 0.5126 36 1 5.7538 1.7174 -1.9574 37 1 5.6580 3.4948 -1.9575 38 1 9.2144 1.5872 -0.8566 39 1 7.7509 1.3213 0.1210 40 1 9.0331 -2.0577 0.0150 41 1 7.9962 2.0592 -3.3901 42 1 7.4437 3.7467 -3.2670 43 1 8.9835 5.4939 -2.3448 44 1 11.3698 6.1770 -2.2068 45 1 13.1273 4.4789 -2.5121 46 1 10.2957 1.4943 -3.0594 47 1 4.0207 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207428899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:07 Heat of formation + Delta-G solvation = 5.171131 kcal Electronic energy + Delta-G solvation = -27058.023277 eV Core-core repulsion = 23398.131794 eV Total energy + Delta-G solvation = -3659.891483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12243 -40.97889 -39.09229 -38.13842 -34.69596 -34.33621 -33.07905 -32.20912 -31.40810 -29.47989 -28.81184 -28.03725 -26.33253 -25.14742 -24.28970 -23.49363 -23.01515 -21.76671 -21.18691 -18.77721 -18.42064 -17.78134 -17.26504 -17.19434 -16.89012 -16.71117 -16.64325 -16.49841 -15.96958 -15.69333 -15.05689 -14.82625 -14.57687 -14.47094 -14.18718 -13.98438 -13.90009 -13.78791 -13.71864 -13.14240 -13.05466 -12.81484 -12.72257 -12.57933 -12.46490 -12.34798 -12.12129 -11.92074 -11.88690 -11.79278 -11.69040 -11.40809 -10.61806 -10.53981 -10.24956 -9.82272 -9.70716 -9.12715 -8.99277 -8.13637 -6.30398 0.30516 0.40648 0.51607 0.53509 1.33547 1.34187 1.41020 2.35807 2.40068 2.81371 2.95473 3.12656 3.48472 3.69252 3.91619 3.96705 4.04990 4.10690 4.19422 4.24712 4.29046 4.31245 4.32515 4.38732 4.47003 4.53141 4.60203 4.65419 4.69725 4.72715 4.78044 4.84344 5.01183 5.02103 5.10719 5.16880 5.27250 5.31769 5.34278 5.39219 5.41991 5.52866 5.54595 5.77588 5.78370 5.92125 5.95360 6.07878 6.26211 6.51096 6.52723 6.89913 7.17482 7.39729 8.88438 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.003651 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.699817 B = 7667.673652 C = 9789.660957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.348 6.348 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.074 4.074 6 C -0.154 4.154 7 C -0.039 4.039 8 C -0.066 4.066 9 C 0.078 3.922 10 N -0.531 5.531 11 C 0.205 3.795 12 C -0.544 4.544 13 H 0.056 0.944 14 C 0.019 3.981 15 N -0.923 5.923 16 Si 0.940 3.060 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.100 3.900 21 C -0.120 4.120 22 C -0.062 4.062 23 C -0.167 4.167 24 C 0.074 3.926 25 N -0.521 5.521 26 C 0.091 3.909 27 C -0.178 4.178 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.017 0.983 37 H 0.085 0.915 38 H 0.001 0.999 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.034 0.966 42 H 0.097 0.903 43 H 0.159 0.841 44 H 0.172 0.828 45 H 0.179 0.821 46 H 0.124 0.876 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 14.819 -1.831 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.262 6.262 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.172 4.172 7 C -0.040 4.040 8 C -0.104 4.104 9 C -0.050 4.050 10 N -0.253 5.253 11 C 0.078 3.922 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.181 4.181 15 N -0.563 5.563 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.028 4.028 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.187 4.187 24 C -0.083 4.083 25 N -0.230 5.230 26 C -0.065 4.065 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.103 0.897 38 H 0.019 0.981 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.176 0.824 44 H 0.190 0.810 45 H 0.196 0.804 46 H 0.142 0.858 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.842 14.254 -1.535 18.594 hybrid contribution -0.828 -1.987 -0.614 2.239 sum -12.670 12.266 -2.149 17.766 Atomic orbital electron populations 1.23338 0.76316 1.05350 1.02485 1.86072 1.23759 1.27527 1.88882 1.19161 0.91871 0.85227 0.96998 1.21484 1.01009 0.91666 1.09035 1.21316 0.94253 0.97857 0.95756 1.21238 0.94278 0.97884 1.03827 1.19716 0.95413 0.92474 0.96348 1.20452 0.90014 1.02468 0.97478 1.21839 0.87543 0.99871 0.95761 1.62495 1.05899 1.36781 1.20168 1.19355 0.93485 0.85191 0.94153 1.21848 1.35963 0.93006 1.07443 0.92638 1.25633 0.95037 1.01421 0.96015 1.70048 1.40109 1.22501 1.23653 0.85886 0.78597 0.79394 0.79566 1.19389 1.20999 1.19965 1.20872 0.91318 0.99785 0.90860 1.20828 0.96325 0.95059 1.00055 1.21767 0.97950 0.94851 0.94217 1.22475 0.92838 1.02442 1.00897 1.23291 1.01692 0.87904 0.95435 1.67623 1.21422 1.20213 1.13777 1.22539 0.88292 0.99445 0.96264 1.20410 0.92358 0.98350 1.08541 0.91258 0.91406 0.86911 0.82882 0.82161 0.83570 0.89348 0.93788 0.96500 0.89654 0.98093 0.97307 0.92913 0.94819 0.88528 0.82368 0.81050 0.80412 0.85809 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.35 -10.24 10.50 -92.47 -0.97 -11.21 16 3 C 0.11 3.39 6.69 22.51 0.15 3.55 16 4 C -0.21 -4.78 9.04 22.36 0.20 -4.58 16 5 C -0.07 -1.49 10.04 22.25 0.22 -1.27 16 6 C -0.15 -3.72 9.70 22.28 0.22 -3.50 16 7 C -0.04 -1.23 5.13 -19.88 -0.10 -1.34 16 8 C -0.07 -2.36 5.27 29.85 0.16 -2.20 16 9 C 0.08 2.86 4.75 86.30 0.41 3.27 16 10 N -0.53 -21.48 4.66 -905.40 -4.22 -25.70 16 11 C 0.20 10.56 4.72 85.56 0.40 10.96 16 12 C -0.54 -29.79 7.33 25.60 0.19 -29.60 16 13 H 0.06 3.00 5.96 -2.91 -0.02 2.98 16 14 C 0.02 1.06 5.46 84.65 0.46 1.52 16 15 N -0.92 -56.19 13.29 21.45 0.28 -55.90 16 16 Si 0.94 45.40 29.54 68.60 2.03 47.43 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 20 C 0.10 3.63 4.97 85.55 0.43 4.05 16 21 C -0.12 -4.26 4.92 -19.77 -0.10 -4.36 16 22 C -0.06 -1.69 9.88 22.47 0.22 -1.47 16 23 C -0.17 -4.00 10.11 22.36 0.23 -3.77 16 24 C 0.07 2.12 11.18 84.69 0.95 3.07 16 25 N -0.52 -19.88 10.36 -195.84 -2.03 -21.91 16 26 C 0.09 3.71 9.68 84.67 0.82 4.53 16 27 C -0.18 -6.34 9.64 22.36 0.22 -6.12 16 28 H 0.07 0.94 7.67 -2.38 -0.02 0.92 16 29 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.15 2.39 6.30 -2.91 -0.02 2.37 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.09 2.79 8.09 -2.38 -0.02 2.77 16 35 H 0.04 1.91 6.44 -2.39 -0.02 1.89 16 36 H 0.02 0.72 6.58 -2.39 -0.02 0.70 16 37 H 0.09 2.57 7.86 -2.38 -0.02 2.55 16 38 H 0.00 0.06 6.60 -2.38 -0.02 0.04 16 39 H 0.01 0.51 6.35 -2.38 -0.02 0.49 16 40 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 41 H 0.03 1.40 6.08 -2.39 -0.01 1.39 16 42 H 0.10 2.82 7.79 -2.39 -0.02 2.80 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 44 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 46 H 0.12 5.76 8.06 -2.91 -0.02 5.74 16 47 H 0.10 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -72.58 384.20 2.24 -70.34 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.96 Total: 22.77 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 6.18 Total: -25.81 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -5.96 Total: -103.51 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.97 Total: -11.21 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.58 2.24 -70.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207428899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.508 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds