Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99493 * 2 1 4 4 C 1.38754 * 120.05979 * 0.25069 * 3 2 1 5 5 C 1.38122 * 119.94474 * 180.31962 * 4 3 2 6 6 C 1.38289 * 120.05307 * 359.68488 * 5 4 3 7 7 C 1.38245 * 120.11416 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05367 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.02495 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47277 * 264.99822 * 9 8 7 11 11 N 1.46904 * 109.47196 * 175.31092 * 10 9 8 12 12 C 1.46894 * 110.99863 * 198.32400 * 11 10 9 13 13 C 1.50698 * 109.47061 * 73.70372 * 12 11 10 14 14 H 1.07999 * 120.00306 * 357.71147 * 13 12 11 15 15 C 1.37880 * 120.00020 * 177.71958 * 13 12 11 16 16 N 1.31517 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00174 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47138 * 59.99999 * 17 15 13 19 19 H 1.48502 * 109.47227 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47039 * 300.00116 * 17 15 13 21 21 C 1.46900 * 110.99853 * 74.37046 * 11 10 9 22 22 C 1.50697 * 109.46905 * 190.00258 * 21 11 10 23 23 C 1.38677 * 120.41587 * 269.71831 * 22 21 11 24 24 C 1.38623 * 118.41960 * 179.78691 * 23 22 21 25 25 C 1.38230 * 119.16344 * 0.51264 * 24 23 22 26 26 N 1.31856 * 120.75912 * 359.72631 * 25 24 23 27 27 C 1.31889 * 121.72807 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47025 * 299.99572 * 1 2 3 29 29 H 1.08992 * 109.47778 * 59.99888 * 1 2 3 30 30 H 1.09000 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02841 * 0.02776 * 4 3 2 32 32 H 1.07999 * 119.97173 * 179.70454 * 5 4 3 33 33 H 1.08001 * 119.94004 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.96906 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47017 * 145.00027 * 9 8 7 36 36 H 1.08998 * 109.47289 * 25.00172 * 9 8 7 37 37 H 1.09004 * 109.46915 * 55.31548 * 10 9 8 38 38 H 1.08992 * 109.47458 * 295.31335 * 10 9 8 39 39 H 1.09001 * 109.46926 * 193.69773 * 12 11 10 40 40 H 1.08997 * 109.47292 * 313.69800 * 12 11 10 41 41 H 0.97003 * 119.99523 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47253 * 310.00044 * 21 11 10 43 43 H 1.09000 * 109.47013 * 70.00017 * 21 11 10 44 44 H 1.08007 * 120.78855 * 0.02562 * 23 22 21 45 45 H 1.08006 * 120.42016 * 180.22017 * 24 23 22 46 46 H 1.07998 * 119.62084 * 179.75179 * 25 24 23 47 47 H 1.08000 * 119.61297 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0014 6 6 3.3017 3.6758 -0.0068 7 6 4.0558 2.5172 -0.0060 8 6 3.4310 1.2849 -0.0004 9 6 4.2537 0.0223 -0.0001 10 6 4.4214 -0.4775 -1.4364 11 7 5.3153 -1.6432 -1.4480 12 6 5.8464 -1.8859 -2.7959 13 6 6.8851 -0.8438 -3.1217 14 1 7.1002 -0.0562 -2.4148 15 6 7.5608 -0.8958 -4.3225 16 7 7.2992 -1.8551 -5.1832 17 14 8.8479 0.3963 -4.7267 18 1 9.9261 0.3571 -3.7063 19 1 9.4239 0.1189 -6.0671 20 1 8.2165 1.7403 -4.7282 21 6 4.6323 -2.8355 -0.9287 22 6 5.6363 -3.9407 -0.7248 23 6 5.9103 -4.8376 -1.7463 24 6 6.8445 -5.8354 -1.5152 25 6 7.4596 -5.9093 -0.2795 26 7 7.1706 -5.0418 0.6705 27 6 6.2909 -4.0768 0.4845 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3204 0.0098 32 1 1.3337 4.5114 -0.0022 33 1 3.7920 4.6382 -0.0116 34 1 5.1342 2.5754 -0.0106 35 1 3.7489 -0.7401 0.5933 36 1 5.2340 0.2275 0.4301 37 1 4.8503 0.3154 -2.0492 38 1 3.4489 -0.7614 -1.8382 39 1 6.3005 -2.8760 -2.8347 40 1 5.0351 -1.8296 -3.5217 41 1 7.7743 -1.8914 -6.0282 42 1 4.1569 -2.5965 0.0226 43 1 3.8747 -3.1599 -1.6421 44 1 5.4106 -4.7583 -2.7005 45 1 7.0852 -6.5491 -2.2893 46 1 8.1855 -6.6861 -0.0902 47 1 6.0799 -3.3851 1.2866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207454230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = 24.871127 kcal Electronic energy + Delta-G solvation = -27345.154894 eV Core-core repulsion = 23686.117668 eV Total energy + Delta-G solvation = -3659.037227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.20785 -39.73583 -37.46158 -36.83073 -33.34230 -32.71223 -31.77145 -31.03422 -30.07338 -28.44093 -27.36081 -27.01009 -24.86271 -23.30549 -22.78353 -22.06677 -21.80240 -20.89507 -19.76424 -17.93481 -16.64990 -16.46941 -16.25455 -15.77667 -15.76275 -15.59183 -15.12166 -14.61958 -14.46402 -14.34151 -13.92209 -13.60677 -13.52004 -13.16845 -12.83204 -12.64866 -12.60506 -12.39328 -12.29294 -12.00689 -11.87853 -11.54984 -11.45988 -11.15395 -11.03852 -10.87636 -10.72079 -10.69917 -10.40145 -10.16584 -9.84224 -9.33760 -9.17506 -8.98798 -8.74622 -8.51156 -8.39010 -8.04381 -7.25825 -6.00736 -4.00473 1.39697 1.51030 1.57619 1.76622 3.29868 3.34737 3.38469 3.41828 3.82703 4.22102 4.45679 4.75692 4.84741 4.86172 4.96569 5.04644 5.06214 5.19892 5.23760 5.34219 5.35327 5.38296 5.40953 5.45287 5.51234 5.57846 5.68548 5.74307 5.82015 5.93042 6.02759 6.05935 6.17588 6.22468 6.29693 6.39952 6.42810 6.56487 6.58629 6.71349 6.77084 6.82696 6.91278 7.14726 7.27252 7.33072 7.44044 7.83056 8.11322 8.20635 8.39411 8.55193 9.05994 9.62844 11.10009 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.004295 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.938522 B = 6517.511193 C = 8853.937949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.156 4.156 7 C -0.077 4.077 8 C -0.099 4.099 9 C -0.069 4.069 10 C 0.074 3.926 11 N -0.530 5.530 12 C 0.187 3.813 13 C -0.501 4.501 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.900 5.900 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.095 3.905 22 C -0.109 4.109 23 C -0.057 4.057 24 C -0.173 4.173 25 C 0.085 3.915 26 N -0.493 5.493 27 C 0.111 3.889 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.023 0.977 39 H 0.040 0.960 40 H -0.012 1.012 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.147 0.853 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.236 2.221 10.586 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.081 3.919 4 C -0.229 4.229 5 C -0.111 4.111 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.101 4.101 9 C -0.106 4.106 10 C -0.054 4.054 11 N -0.254 5.254 12 C 0.062 3.938 13 C -0.540 4.540 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.034 4.034 22 C -0.111 4.111 23 C -0.084 4.084 24 C -0.193 4.193 25 C -0.073 4.073 26 N -0.201 5.201 27 C -0.046 4.046 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.006 0.994 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.165 0.835 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.286 1.985 11.510 16.241 hybrid contribution -0.629 0.813 -1.945 2.200 sum -11.914 2.798 9.565 15.533 Atomic orbital electron populations 1.23013 0.78977 1.03732 1.00986 1.86120 1.20767 1.26832 1.88609 1.18886 0.91913 0.84081 0.97007 1.21158 0.99654 0.92512 1.09621 1.20848 0.94711 0.96705 0.98802 1.21041 0.93859 0.98406 1.04117 1.21017 1.00304 0.90963 0.97174 1.19403 0.90422 0.96454 1.03780 1.20498 0.98682 0.92885 0.98576 1.21895 0.94289 0.94439 0.94778 1.62153 1.33584 1.01211 1.28448 1.19866 0.94023 0.98383 0.81508 1.21101 1.20049 1.11301 1.01522 0.92007 1.24952 0.97269 0.95985 0.96320 1.69937 1.42508 1.32550 1.08989 0.86610 0.81891 0.81885 0.77343 1.20199 1.21420 1.20296 1.20951 0.92702 0.89811 0.99932 1.20788 0.99231 0.96370 0.94704 1.21559 0.95759 0.92685 0.98396 1.22043 0.98557 1.00116 0.98607 1.22578 0.98028 0.97068 0.89582 1.67624 1.14641 1.03989 1.33894 1.22496 0.91515 0.94465 0.96120 0.92991 0.92852 0.88423 0.85909 0.86280 0.86122 0.85053 0.91394 0.90310 0.89904 0.95872 0.94204 0.99439 0.92995 0.90726 0.94969 0.85040 0.85331 0.83517 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.16 9.64 -19.43 -0.19 -4.35 16 3 C 0.13 1.76 6.66 -39.22 -0.26 1.50 16 4 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 5 C -0.09 -1.04 10.04 -39.61 -0.40 -1.44 16 6 C -0.16 -1.87 10.04 -39.56 -0.40 -2.27 16 7 C -0.08 -1.05 9.68 -39.61 -0.38 -1.43 16 8 C -0.10 -1.48 5.15 -104.48 -0.54 -2.01 16 9 C -0.07 -1.09 5.08 -27.88 -0.14 -1.23 16 10 C 0.07 1.42 4.79 -3.82 -0.02 1.40 16 11 N -0.53 -11.05 4.37 -237.52 -1.04 -12.09 16 12 C 0.19 4.75 4.58 -4.98 -0.02 4.72 16 13 C -0.50 -13.96 8.44 -34.44 -0.29 -14.25 16 14 H 0.06 1.72 7.71 -52.49 -0.40 1.31 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.09 1.68 4.98 -4.98 -0.02 1.65 16 22 C -0.11 -1.94 4.94 -104.48 -0.52 -2.45 16 23 C -0.06 -1.02 8.02 -39.28 -0.32 -1.33 16 24 C -0.17 -2.75 10.11 -39.44 -0.40 -3.15 16 25 C 0.08 1.33 11.18 -17.54 -0.20 1.13 16 26 N -0.49 -8.61 10.36 -13.25 -0.14 -8.74 16 27 C 0.11 1.91 10.86 -17.55 -0.19 1.72 16 28 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 36 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 37 H 0.08 1.78 7.15 -51.93 -0.37 1.40 16 38 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 39 H 0.04 1.06 5.10 -51.93 -0.26 0.80 16 40 H -0.01 -0.33 8.03 -51.93 -0.42 -0.75 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.16 6.58 -51.93 -0.34 0.82 16 43 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 44 H 0.13 2.34 7.73 -52.48 -0.41 1.94 16 45 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 46 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -32.07 386.67 -10.39 -42.45 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.01 Total: 3.46 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.55 Total: -17.59 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.44 Total: -46.59 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.19 Total: -4.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.07 -10.39 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207454230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.325 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds