Wall clock time and date at job start Tue Mar 31 2020 14:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99493 * 2 1 4 4 C 1.38754 * 120.05979 * 0.25069 * 3 2 1 5 5 C 1.38122 * 119.94474 * 180.31962 * 4 3 2 6 6 C 1.38289 * 120.05307 * 359.68488 * 5 4 3 7 7 C 1.38245 * 120.11416 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05367 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.02495 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47277 * 264.99822 * 9 8 7 11 11 N 1.46904 * 109.47196 * 175.31092 * 10 9 8 12 12 C 1.46894 * 110.99863 * 198.32400 * 11 10 9 13 13 C 1.50698 * 109.47061 * 73.70372 * 12 11 10 14 14 H 1.07999 * 120.00306 * 357.71147 * 13 12 11 15 15 C 1.37880 * 120.00020 * 177.71958 * 13 12 11 16 16 N 1.31517 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00174 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47138 * 59.99999 * 17 15 13 19 19 H 1.48502 * 109.47227 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47039 * 300.00116 * 17 15 13 21 21 C 1.46900 * 110.99853 * 74.37046 * 11 10 9 22 22 C 1.50697 * 109.46905 * 190.00258 * 21 11 10 23 23 C 1.38677 * 120.41587 * 269.71831 * 22 21 11 24 24 C 1.38623 * 118.41960 * 179.78691 * 23 22 21 25 25 C 1.38230 * 119.16344 * 0.51264 * 24 23 22 26 26 N 1.31856 * 120.75912 * 359.72631 * 25 24 23 27 27 C 1.31889 * 121.72807 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47025 * 299.99572 * 1 2 3 29 29 H 1.08992 * 109.47778 * 59.99888 * 1 2 3 30 30 H 1.09000 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02841 * 0.02776 * 4 3 2 32 32 H 1.07999 * 119.97173 * 179.70454 * 5 4 3 33 33 H 1.08001 * 119.94004 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.96906 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47017 * 145.00027 * 9 8 7 36 36 H 1.08998 * 109.47289 * 25.00172 * 9 8 7 37 37 H 1.09004 * 109.46915 * 55.31548 * 10 9 8 38 38 H 1.08992 * 109.47458 * 295.31335 * 10 9 8 39 39 H 1.09001 * 109.46926 * 193.69773 * 12 11 10 40 40 H 1.08997 * 109.47292 * 313.69800 * 12 11 10 41 41 H 0.97003 * 119.99523 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47253 * 310.00044 * 21 11 10 43 43 H 1.09000 * 109.47013 * 70.00017 * 21 11 10 44 44 H 1.08007 * 120.78855 * 0.02562 * 23 22 21 45 45 H 1.08006 * 120.42016 * 180.22017 * 24 23 22 46 46 H 1.07998 * 119.62084 * 179.75179 * 25 24 23 47 47 H 1.08000 * 119.61297 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0014 6 6 3.3017 3.6758 -0.0068 7 6 4.0558 2.5172 -0.0060 8 6 3.4310 1.2849 -0.0004 9 6 4.2537 0.0223 -0.0001 10 6 4.4214 -0.4775 -1.4364 11 7 5.3153 -1.6432 -1.4480 12 6 5.8464 -1.8859 -2.7959 13 6 6.8851 -0.8438 -3.1217 14 1 7.1002 -0.0562 -2.4148 15 6 7.5608 -0.8958 -4.3225 16 7 7.2992 -1.8551 -5.1832 17 14 8.8479 0.3963 -4.7267 18 1 9.9261 0.3571 -3.7063 19 1 9.4239 0.1189 -6.0671 20 1 8.2165 1.7403 -4.7282 21 6 4.6323 -2.8355 -0.9287 22 6 5.6363 -3.9407 -0.7248 23 6 5.9103 -4.8376 -1.7463 24 6 6.8445 -5.8354 -1.5152 25 6 7.4596 -5.9093 -0.2795 26 7 7.1706 -5.0418 0.6705 27 6 6.2909 -4.0768 0.4845 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3204 0.0098 32 1 1.3337 4.5114 -0.0022 33 1 3.7920 4.6382 -0.0116 34 1 5.1342 2.5754 -0.0106 35 1 3.7489 -0.7401 0.5933 36 1 5.2340 0.2275 0.4301 37 1 4.8503 0.3154 -2.0492 38 1 3.4489 -0.7614 -1.8382 39 1 6.3005 -2.8760 -2.8347 40 1 5.0351 -1.8296 -3.5217 41 1 7.7743 -1.8914 -6.0282 42 1 4.1569 -2.5965 0.0226 43 1 3.8747 -3.1599 -1.6421 44 1 5.4106 -4.7583 -2.7005 45 1 7.0852 -6.5491 -2.2893 46 1 8.1855 -6.6861 -0.0902 47 1 6.0799 -3.3851 1.2866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207454230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:10 Heat of formation + Delta-G solvation = 6.530617 kcal Electronic energy + Delta-G solvation = -27345.950199 eV Core-core repulsion = 23686.117668 eV Total energy + Delta-G solvation = -3659.832531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22637 -41.02085 -38.67722 -38.14839 -34.90515 -34.44639 -33.13007 -32.41975 -31.01971 -29.91436 -28.82078 -27.99726 -26.45778 -24.82221 -24.22305 -23.28955 -22.99003 -22.11141 -21.33168 -18.85913 -18.54581 -17.93545 -17.36035 -17.13434 -16.83825 -16.64700 -16.44784 -16.31610 -16.05770 -15.35785 -15.14055 -15.07709 -14.68103 -14.48911 -14.16853 -14.00420 -13.94330 -13.80336 -13.58171 -13.53960 -13.21394 -12.80105 -12.77550 -12.64664 -12.50834 -12.32844 -12.25344 -11.97623 -11.86603 -11.64781 -11.46403 -11.30411 -10.68001 -10.50146 -10.36298 -9.85220 -9.74329 -9.07753 -8.96749 -8.18044 -6.25737 0.26128 0.40238 0.42397 0.54631 1.38947 1.41637 1.49065 2.40208 2.45406 2.81873 2.90297 3.14575 3.44369 3.63042 3.90646 3.91397 3.94206 3.99442 4.12898 4.18146 4.24741 4.26144 4.33384 4.40804 4.48341 4.50767 4.54921 4.56592 4.63204 4.71487 4.74091 4.82269 4.87901 4.94061 5.02444 5.12613 5.15301 5.25597 5.28765 5.37010 5.44927 5.46276 5.58218 5.67426 5.69875 5.85628 5.94329 6.10125 6.37423 6.52730 6.62634 6.88162 7.08240 7.42153 8.92094 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008424 B = 0.004295 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.938522 B = 6517.511193 C = 8853.937949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.091 4.091 8 C -0.129 4.129 9 C -0.051 4.051 10 C 0.085 3.915 11 N -0.533 5.533 12 C 0.203 3.797 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.100 3.900 22 C -0.125 4.125 23 C -0.077 4.077 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.507 5.507 27 C 0.106 3.894 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.027 0.973 40 H -0.046 1.046 41 H 0.263 0.737 42 H 0.099 0.901 43 H 0.027 0.973 44 H 0.119 0.881 45 H 0.155 0.845 46 H 0.184 0.816 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 3.226 11.757 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.231 4.231 5 C -0.106 4.106 6 C -0.179 4.179 7 C -0.109 4.109 8 C -0.130 4.130 9 C -0.088 4.088 10 C -0.043 4.043 11 N -0.257 5.257 12 C 0.077 3.923 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.784 3.216 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.028 4.028 22 C -0.127 4.127 23 C -0.104 4.104 24 C -0.194 4.194 25 C -0.072 4.072 26 N -0.216 5.216 27 C -0.051 4.051 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.045 0.955 40 H -0.028 1.028 41 H 0.071 0.929 42 H 0.117 0.883 43 H 0.045 0.955 44 H 0.137 0.863 45 H 0.172 0.828 46 H 0.200 0.800 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.660 2.995 12.701 17.500 hybrid contribution -0.604 0.461 -2.301 2.424 sum -12.264 3.456 10.400 16.447 Atomic orbital electron populations 1.23293 0.76856 1.05203 1.02131 1.86077 1.23086 1.27004 1.88640 1.19057 0.91814 0.85062 0.97198 1.21494 1.00963 0.91995 1.08670 1.21280 0.94679 0.97745 0.96907 1.21345 0.94469 0.98650 1.03466 1.21157 1.00596 0.91453 0.97698 1.19395 0.91176 0.96120 1.06324 1.20249 0.98854 0.93911 0.95836 1.21785 0.92947 0.92866 0.96744 1.62102 1.35006 1.03015 1.25536 1.19509 0.92543 0.97108 0.83108 1.21404 1.20655 1.11721 1.01753 0.92481 1.25786 0.99325 0.98023 0.96147 1.70058 1.43593 1.34175 1.09367 0.85585 0.79237 0.79477 0.77253 1.19637 1.20777 1.19376 1.20969 0.92571 0.88699 1.00563 1.20820 0.99951 0.96613 0.95331 1.21669 0.96785 0.93861 0.98088 1.22356 0.97565 0.99849 0.99580 1.23185 0.97914 0.97117 0.88935 1.67694 1.14841 1.04440 1.34634 1.22744 0.91323 0.94820 0.96213 0.91241 0.92168 0.86973 0.83372 0.83067 0.83921 0.85244 0.90844 0.90830 0.92885 0.96638 0.95542 1.02827 0.92866 0.88331 0.95495 0.86263 0.82779 0.79955 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.80 9.64 -92.44 -0.89 -9.69 16 3 C 0.11 3.11 6.66 22.51 0.15 3.26 16 4 C -0.21 -4.62 9.04 22.37 0.20 -4.42 16 5 C -0.09 -1.76 10.04 22.25 0.22 -1.53 16 6 C -0.16 -3.60 10.04 22.28 0.22 -3.38 16 7 C -0.09 -2.48 9.68 22.25 0.22 -2.27 16 8 C -0.13 -3.87 5.15 -19.77 -0.10 -3.97 16 9 C -0.05 -1.66 5.08 29.85 0.15 -1.51 16 10 C 0.08 3.39 4.79 86.30 0.41 3.80 16 11 N -0.53 -23.13 4.37 -905.39 -3.96 -27.09 16 12 C 0.20 10.84 4.58 85.56 0.39 11.23 16 13 C -0.52 -29.73 8.44 25.60 0.22 -29.51 16 14 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 15 C 0.01 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 17 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.10 3.65 4.98 85.56 0.43 4.07 16 22 C -0.12 -4.53 4.94 -19.78 -0.10 -4.62 16 23 C -0.08 -2.81 8.02 22.47 0.18 -2.63 16 24 C -0.17 -5.38 10.11 22.36 0.23 -5.15 16 25 C 0.09 2.53 11.18 84.69 0.95 3.48 16 26 N -0.51 -17.11 10.36 -195.84 -2.03 -19.14 16 27 C 0.11 3.59 10.86 84.67 0.92 4.51 16 28 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 29 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.07 2.27 6.43 -2.39 -0.02 2.25 16 36 H 0.07 2.43 8.05 -2.39 -0.02 2.41 16 37 H 0.05 2.41 7.15 -2.38 -0.02 2.40 16 38 H 0.02 0.63 8.02 -2.39 -0.02 0.61 16 39 H 0.03 1.48 5.10 -2.39 -0.01 1.47 16 40 H -0.05 -2.70 8.03 -2.39 -0.02 -2.72 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.10 3.08 6.58 -2.39 -0.02 3.07 16 43 H 0.03 1.00 8.07 -2.39 -0.02 0.99 16 44 H 0.12 4.52 7.73 -2.91 -0.02 4.49 16 45 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 46 H 0.18 3.97 8.06 -2.91 -0.02 3.95 16 47 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -70.72 386.67 2.65 -68.07 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.95 Total: 22.94 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 6.26 Total: -26.45 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -5.70 Total: -102.04 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.89 Total: -9.69 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.72 2.65 -68.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207454230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.597 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds