Wall clock time and date at job start Tue Mar 31 2020 14:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00208 * 2 1 4 4 C 1.38727 * 120.05974 * 179.97438 * 3 2 1 5 5 C 1.38135 * 119.94709 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05823 * 0.02862 * 5 4 3 7 7 C 1.50698 * 119.94779 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47269 * 89.99382 * 7 6 5 9 9 N 1.46898 * 109.46815 * 179.27261 * 8 7 6 10 10 C 1.46900 * 111.00244 * 287.81742 * 9 8 7 11 11 C 1.50705 * 109.47341 * 299.48112 * 10 9 8 12 12 H 1.07998 * 119.99705 * 4.20841 * 11 10 9 13 13 C 1.37870 * 120.00104 * 184.20387 * 11 10 9 14 14 N 1.31517 * 120.00288 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46957 * 90.00447 * 15 13 11 17 17 H 1.48504 * 109.47050 * 210.00054 * 15 13 11 18 18 H 1.48493 * 109.47132 * 330.00171 * 15 13 11 19 19 C 1.46905 * 110.99721 * 163.86743 * 9 8 7 20 20 C 1.50704 * 109.46855 * 189.99754 * 19 9 8 21 21 C 1.38669 * 120.42188 * 270.24860 * 20 19 9 22 22 C 1.38630 * 118.41991 * 180.24600 * 21 20 19 23 23 C 1.38226 * 119.16123 * 359.75261 * 22 21 20 24 24 N 1.31850 * 120.76351 * 359.97438 * 23 22 21 25 25 C 1.31879 * 121.72858 * 359.97438 * 24 23 22 26 26 C 1.38270 * 120.10925 * 0.24291 * 6 5 4 27 27 C 1.38145 * 120.05482 * 359.46258 * 26 6 5 28 28 H 1.09000 * 109.47054 * 59.99376 * 1 2 3 29 29 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47016 * 299.99992 * 1 2 3 31 31 H 1.08006 * 120.02324 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97563 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46740 * 329.99271 * 7 6 5 34 34 H 1.08999 * 109.47087 * 209.99601 * 7 6 5 35 35 H 1.09005 * 109.46846 * 59.27644 * 8 7 6 36 36 H 1.08991 * 109.47345 * 299.27210 * 8 7 6 37 37 H 1.08999 * 109.46868 * 59.47871 * 10 9 8 38 38 H 1.09004 * 109.47325 * 179.47927 * 10 9 8 39 39 H 0.97000 * 120.00315 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47332 * 70.00196 * 19 9 8 41 41 H 1.08994 * 109.46936 * 309.99516 * 19 9 8 42 42 H 1.07997 * 120.78834 * 359.97438 * 21 20 19 43 43 H 1.08001 * 120.41543 * 179.73189 * 22 21 20 44 44 H 1.08001 * 119.61565 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.62127 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.97320 * 179.70909 * 26 6 5 47 47 H 1.07996 * 120.02980 * 180.24751 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 6 4.2182 5.4739 -1.4393 9 7 4.8694 6.7907 -1.4380 10 6 3.9307 7.8419 -1.0236 11 6 2.7718 7.8885 -1.9859 12 1 2.7013 7.1619 -2.7818 13 6 1.8017 8.8586 -1.8501 14 7 1.8877 9.7437 -0.8812 15 14 0.3649 8.9159 -3.0425 16 1 -0.7469 8.0826 -2.5183 17 1 -0.0971 10.3191 -3.1938 18 1 0.7964 8.3917 -4.3631 19 6 5.4499 7.0921 -2.7534 20 6 6.3127 8.3235 -2.6515 21 6 5.7680 9.5817 -2.8595 22 6 6.6007 10.6856 -2.7605 23 6 7.9355 10.4973 -2.4549 24 7 8.4179 9.2861 -2.2581 25 6 7.6553 8.2135 -2.3431 26 6 1.9211 3.6048 0.0068 27 6 1.2915 2.3752 0.0001 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0208 0.3799 0.0005 32 1 5.1345 2.5750 0.0019 33 1 4.9438 4.9378 0.5170 34 1 3.3579 5.7459 0.5169 35 1 3.2615 5.5422 -1.9571 36 1 4.8570 4.7532 -1.9495 37 1 3.5620 7.6250 -0.0211 38 1 4.4411 8.8051 -1.0226 39 1 1.2050 10.4260 -0.7854 40 1 4.6496 7.2678 -3.4722 41 1 6.0570 6.2495 -3.0843 42 1 4.7211 9.6984 -3.0973 43 1 6.2113 11.6802 -2.9206 44 1 8.5906 11.3522 -2.3756 45 1 8.0862 7.2375 -2.1757 46 1 1.3342 4.5114 0.0120 47 1 0.2129 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207472115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:16 Heat of formation + Delta-G solvation = 21.410687 kcal Electronic energy + Delta-G solvation = -26943.459642 eV Core-core repulsion = 23284.272359 eV Total energy + Delta-G solvation = -3659.187283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.06005 -39.69076 -37.87899 -36.75118 -32.91626 -32.67044 -31.57913 -30.97281 -30.76567 -28.23553 -27.25911 -26.79456 -24.64066 -23.41487 -22.91337 -22.51621 -21.74283 -20.55076 -19.59012 -18.09552 -16.68186 -16.37983 -16.16850 -15.82359 -15.76789 -15.50469 -15.04257 -14.65054 -14.47124 -14.11119 -13.94512 -13.60576 -13.37541 -13.18726 -13.06394 -12.73222 -12.47358 -12.42804 -12.33279 -11.97780 -11.91146 -11.37668 -11.21518 -11.09895 -11.02028 -10.77211 -10.70503 -10.59658 -10.31155 -10.12245 -10.03514 -9.68658 -9.16281 -8.97785 -8.85941 -8.51103 -8.49040 -7.91936 -7.24346 -6.11335 -4.20734 1.48240 1.56283 1.62511 1.84912 3.18420 3.25493 3.27013 3.28877 3.89890 4.28181 4.31299 4.84571 4.87405 4.96250 4.98536 5.02219 5.07414 5.18473 5.31078 5.31138 5.39103 5.49409 5.54240 5.54601 5.60051 5.66860 5.75145 5.81184 5.87403 6.02257 6.14846 6.18609 6.25772 6.30328 6.42455 6.48927 6.54399 6.57828 6.72691 6.76893 6.92655 6.96439 7.00424 7.17010 7.25017 7.43247 7.47342 7.82824 7.96938 8.17258 8.22125 8.42077 8.90114 9.45797 10.92857 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.003371 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.001463 B = 8303.921514 C =10325.069756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.110 3.890 4 C -0.153 4.153 5 C -0.080 4.080 6 C -0.101 4.101 7 C -0.070 4.070 8 C 0.068 3.932 9 N -0.538 5.538 10 C 0.181 3.819 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.881 3.119 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.101 3.899 20 C -0.108 4.108 21 C -0.048 4.048 22 C -0.178 4.178 23 C 0.082 3.918 24 N -0.497 5.497 25 C 0.104 3.896 26 C -0.073 4.073 27 C -0.206 4.206 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.262 0.738 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.144 0.856 43 H 0.127 0.873 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.129 0.871 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -11.084 -0.394 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.237 6.237 3 C 0.066 3.934 4 C -0.172 4.172 5 C -0.098 4.098 6 C -0.101 4.101 7 C -0.108 4.108 8 C -0.061 4.061 9 N -0.262 5.262 10 C 0.056 3.944 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.709 3.291 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.027 4.027 20 C -0.111 4.111 21 C -0.075 4.075 22 C -0.198 4.198 23 C -0.076 4.076 24 N -0.206 5.206 25 C -0.053 4.053 26 C -0.091 4.091 27 C -0.225 4.225 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.147 0.853 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.509 -11.228 0.234 11.766 hybrid contribution -3.002 0.510 -1.349 3.330 sum 0.507 -10.718 -1.115 10.787 Atomic orbital electron populations 1.23002 0.78757 1.03508 1.01403 1.86026 1.21107 1.27338 1.89199 1.19001 0.92395 0.83909 0.98116 1.20350 0.91213 0.98495 1.07123 1.20893 0.99816 0.90945 0.98193 1.19979 0.93488 0.95686 1.00997 1.20502 1.00096 0.92005 0.98182 1.21890 0.98365 0.90539 0.95260 1.62547 1.35895 1.03226 1.24490 1.19859 0.88860 0.89936 0.95769 1.21683 1.08449 1.14002 1.14539 0.92535 1.24902 0.97761 0.95465 0.95269 1.69943 1.34658 1.16734 1.31111 0.86773 0.83279 0.77360 0.81714 1.20663 1.21148 1.19970 1.20801 0.96074 0.93099 0.92775 1.20825 0.95193 0.96006 0.99048 1.21799 1.00708 0.91629 0.93325 1.22098 0.95103 0.99881 1.02718 1.22556 0.93578 0.94694 0.96729 1.67606 1.39561 0.99145 1.14252 1.22522 0.90413 0.96975 0.95411 1.21023 0.94436 0.97141 0.96482 1.21218 0.99781 0.92430 1.09025 0.92734 0.88571 0.92768 0.85677 0.85415 0.91201 0.90323 0.93186 0.93096 0.95258 0.94358 0.92787 0.92752 0.91874 0.83830 0.85495 0.83706 0.83436 0.85296 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.03 10.50 -19.44 -0.20 -4.23 16 3 C 0.11 1.50 6.69 -39.22 -0.26 1.24 16 4 C -0.15 -2.00 9.99 -39.44 -0.39 -2.40 16 5 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 6 C -0.10 -1.51 5.13 -104.60 -0.54 -2.05 16 7 C -0.07 -1.15 5.40 -27.88 -0.15 -1.30 16 8 C 0.07 1.20 4.78 -3.82 -0.02 1.18 16 9 N -0.54 -10.52 4.66 -237.51 -1.11 -11.63 16 10 C 0.18 4.26 4.64 -4.97 -0.02 4.24 16 11 C -0.55 -13.61 7.26 -34.44 -0.25 -13.86 16 12 H 0.06 1.41 5.95 -52.49 -0.31 1.10 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 15 Si 0.88 20.19 29.54 -169.99 -5.02 15.17 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.10 1.82 4.96 -4.97 -0.02 1.79 16 20 C -0.11 -1.94 4.90 -104.48 -0.51 -2.45 16 21 C -0.05 -0.89 8.07 -39.28 -0.32 -1.21 16 22 C -0.18 -2.88 10.11 -39.44 -0.40 -3.28 16 23 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 24 N -0.50 -8.50 10.36 -13.25 -0.14 -8.64 16 25 C 0.10 1.75 10.86 -17.55 -0.19 1.56 16 26 C -0.07 -1.10 9.69 -39.60 -0.38 -1.48 16 27 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.08 1.46 6.68 -51.93 -0.35 1.11 16 35 H 0.05 1.00 6.12 -51.93 -0.32 0.68 16 36 H 0.05 0.81 7.80 -51.93 -0.41 0.41 16 37 H 0.03 0.75 6.68 -51.93 -0.35 0.41 16 38 H 0.04 0.98 5.92 -51.93 -0.31 0.68 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.05 1.07 6.57 -51.93 -0.34 0.73 16 41 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 42 H 0.14 2.92 7.94 -52.49 -0.42 2.51 16 43 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 46 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 47 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -28.73 383.33 -10.30 -39.03 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.84 Total: 6.78 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.50 Total: -18.63 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.51 Total: -43.89 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.20 Total: -4.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.73 -10.30 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207472115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.438 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds